cluster # 166

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Oryza sativa
cluster # 166 cluster # 166 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_166#0 length = 828 sequences # 1

consensus_166#1 length = 106 sequences # 1

consensusID : consensus_166#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 828
fasta sequence

                              [AAATTGTTAGTGAAGTAATTAATCAAGTAATTAAGTCTGCTTAATTAATCAACTACTACACAAAGAAAAAGATCGATGGCGTCTCCCGGCGTTGTGTGTACTACTGTAACGCCGACGTCGTCGGCCGGGTCGGACCAGGTCGTGGCCGGCGGCGGCGAGGCGGCGCGGCGGCCGGTGGCGCCGGCGGTGATGGAGGAGCGGAAGCGGAAGCGGAAGGAGTCGAACAGGCTGTCCGCGCAGCGGTCGCGGGCGCGGAAGCAGCAGCAGCTGGACGAGCTGGCCGGGCAGGTGGCGGCGCTGCGCGCCCGGAACGGCGCCCTGGGCCTCGCCGCGCGCGAGGCGGCGCGCCGGTGCGCCGCCGTGCGCGCCGAGAACGAGCTGCTCCGCGCGCGCTCCGTCGAGCTCGCCGCGCGCCTCGACTCCCTCACCGACCTGGCGCAGTGCCTGCACGACGCCGCCGCGGCCTCCTCCTTCGCCGCCGCGCCCCCGATGATGATGGCGGGCGCCGCCACCGCCTTCCCCACCGGCGCCGTCGGCGCCGCCGCCGGCTTCATGATGCCCCAGCTGCCGCCGCCGCTCCTCGACGCCACCACCATGGGCATGCATTGCAACTACTACTACTAGTCTACTATAGCTATAGCTAGCGTGTCAAGTCTTCATTAAGTTAGCTCTAGTAAGCTCTCTCTCTCTAGTCTCTCTACATGTGTCCAAAGTGTTTGTGCCTCTTCTTTTGTGTTGTTATTAGGTGACCTAATCAAAGGGCAAGAAGGACATTTCATGTGTGTATGAGACTTTATTATAAATGTGAAATGGACATCAAGGACAATT]

[+] EMBL AK110526             [AAATTGTTAGTGAAGTAATTAATCAAGTAATTAAGTCTGCTTAATTAATCAACTACTACACAAAGAAAAAGATCGATGGCGTCTCCCGGCGTTGTGTGTACTACTGTAACGCCGACGTCGTCGGCCGGGTCGGACCAGGTCGTGGCCGGCGGCGGCGAGGCGGCGCGGCGGCCGGTGGCGCCGGCGGTGATGGAGGAGCGGAAGCGGAAGCGGAAGGAGTCGAACAGGCTGTCCGCGCAGCGGTCGCGGGCGCGGAAGCAGCAGCAGCTGGACGAGCTGGCCGGGCAGGTGGCGGCGCTGCGCGCCCGGAACGGCGCCCTGGGCCTCGCCGCGCGCGAGGCGGCGCGCCGGTGCGCCGCCGTGCGCGCCGAGAACGAGCTGCTCCGCGCGCGCTCCGTCGAGCTCGCCGCGCGCCTCGACTCCCTCACCGACCTGGCGCAGTGCCTGCACGACGCCGCCGCGGCCTCCTCCTTCGCCGCCGCGCCCCCGATGATGATGGCGGGCGCCGCCACCGCCTTCCCCACCGGCGCCGTCGGCGCCGCCGCCGGCTTCATGATGCCCCAGCTGCCGCCGCCGCTCCTCGACGCCACCACCATGGGCATGCATTGCAACTACTACTACTAGTCTACTATAGCTATAGCTAGCGTGTCAAGTCTTCATTAAGTTAGCTCTAGTAAGCTCTCTCTCTCTAGTCTCTCTACATGTGTCCAAAGTGTTTGTGCCTCTTCTTTTGTGTTGTTATTAGGTGACCTAATCAAAGGGCAAGAAGGACATTTCATGTGTGTATGAGACTTTATTATAAATGTGAAATGGACATCAAGGACAATT]




>consensus_166#0
AAATTGTTAGTGAAGTAATTAATCAAGTAATTAAGTCTGCTTAATTAATCAACTACTACA
CAAAGAAAAAGATCGATGGCGTCTCCCGGCGTTGTGTGTACTACTGTAACGCCGACGTCG
TCGGCCGGGTCGGACCAGGTCGTGGCCGGCGGCGGCGAGGCGGCGCGGCGGCCGGTGGCG
CCGGCGGTGATGGAGGAGCGGAAGCGGAAGCGGAAGGAGTCGAACAGGCTGTCCGCGCAG
CGGTCGCGGGCGCGGAAGCAGCAGCAGCTGGACGAGCTGGCCGGGCAGGTGGCGGCGCTG
CGCGCCCGGAACGGCGCCCTGGGCCTCGCCGCGCGCGAGGCGGCGCGCCGGTGCGCCGCC
GTGCGCGCCGAGAACGAGCTGCTCCGCGCGCGCTCCGTCGAGCTCGCCGCGCGCCTCGAC
TCCCTCACCGACCTGGCGCAGTGCCTGCACGACGCCGCCGCGGCCTCCTCCTTCGCCGCC
GCGCCCCCGATGATGATGGCGGGCGCCGCCACCGCCTTCCCCACCGGCGCCGTCGGCGCC
GCCGCCGGCTTCATGATGCCCCAGCTGCCGCCGCCGCTCCTCGACGCCACCACCATGGGC
ATGCATTGCAACTACTACTACTAGTCTACTATAGCTATAGCTAGCGTGTCAAGTCTTCAT
TAAGTTAGCTCTAGTAAGCTCTCTCTCTCTAGTCTCTCTACATGTGTCCAAAGTGTTTGT
GCCTCTTCTTTTGTGTTGTTATTAGGTGACCTAATCAAAGGGCAAGAAGGACATTTCATG
TGTGTATGAGACTTTATTATAAATGTGAAATGGACATCAAGGACAATT

consensusID : consensus_166#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 106
fasta sequence

                              [TTTTTTTTTTTTAACCACATAAAATTGTCCTTGATGTCCATTTCACATTTATAATAAAGTCTCATACACACATGAAATGTCCTTCTTGCCCTTTGTCTCGTCCTCT]

[+] EMBL CA760903             [TTTTTTTTTTTTAACCACATAAAATTGTCCTTGATGTCCATTTCACATTTATAATAAAGTCTCATACACACATGAAATGTCCTTCTTGCCCTTTGTCTCGTCCTCT]




>consensus_166#1
TTTTTTTTTTTTAACCACATAAAATTGTCCTTGATGTCCATTTCACATTTATAATAAAGT
CTCATACACACATGAAATGTCCTTCTTGCCCTTTGTCTCGTCCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_166#0      AAATTGTTAGTGAAGTAATTAATCAAGTAATTAAGTCTGCTTAATTAATCAACTACTACA 60
consensus_166#1      ------------------------------------------------------------
                                                                                 

consensus_166#0      CAAAGAAAAAGATCGATGGCGTCTCCCGGCGTTGTGTGTACTACTGTAACGCCGACGTCG 120
consensus_166#1      ------------------------------------------------------------
                                                                                 

consensus_166#0      TCGGCCGGGTCGGACCAGGTCGTGGCCGGCGGCGGCGAGGCGGCGCGGCGGCCGGTGGCG 180
consensus_166#1      ------------------------------------------------------------
                                                                                 

consensus_166#0      CCGGCGGTGATGGAGGAGCGGAAGCGGAAGCGGAAGGAGTCGAACAGGCTGTCCGCGCAG 240
consensus_166#1      ------------------------------------------------------------
                                                                                 

consensus_166#0      CGGTCGCGGGCGCGGAAGCAGCAGCAGCTGGACGAGCTGGCCGGGCAGGTGGCGGCGCTG 300
consensus_166#1      ------------------------------------------------------------
                                                                                 

consensus_166#0      CGCGCCCGGAACGGCGCCCTGGGCCTCGCCGCGCGCGAGGCGGCGCGCCGGTGCGCCGCC 360
consensus_166#1      ------------------------------------------------------------
                                                                                 

consensus_166#0      GTGCGCGCCGAGAACGAGCTGCTCCGCGCGCGCTCCGTCGAGCTCGCCGCGCGCCTCGAC 420
consensus_166#1      ------------------------------------------------------------
                                                                                 

consensus_166#0      TCCCTCACCGACCTGGCGCAGTGCCTGCACGACGCCGCCGCGGCCTCCTCCTTCGCCGCC 480
consensus_166#1      ------------------------------------------------------------
                                                                                 

consensus_166#0      GCGCCCCCGATGATGATGGCGGGCGCCGCCACCGCCTTCCCCACCGGCGCCGTCGGCGCC 540
consensus_166#1      ------------------------------------------------------------
                                                                                 

consensus_166#0      GCCGCCGGCTTCATGATGCCCCAGCTGCCGCCGCCGCTCCTCGACGCCACCACCATGGGC 600
consensus_166#1      ------------------------------------------------------------
                                                                                 

consensus_166#0      ATGCATTGCAACTACTACTACTAGTCTACTATAGCTATAGCTAGCGTGTCAAGTCTTCAT 660
consensus_166#1      -----------------------------TTTTTTTTTTTTAACCACATAAAATTGTCCT 31
                                                  * *   * *    * *   * ** *  ** *

consensus_166#0      TAAGTTAGCTCTAGTAAGCTCTCTCTCTCTAGTCTCTCTACATGTGTCCAAAGTGTTTGT 720
consensus_166#1      TGATGT----CCATTTCACATTTATAATAAAGTCTCA-TACACACATGAAATGTCCTTCT 86
                     * *  *    * * *   *  *     *  ******  ****    *  ** **  ** *

consensus_166#0      -GCCTCTTCTTTTGTGTTGTTATTAGGTGACCTAATCAAAGGGCAAGAAGGACATTTCAT 779
consensus_166#1      TGCCCTTTGTCTCGTCCTCT---------------------------------------- 106
                      ***  ** * * **  * *                                        

consensus_166#0      GTGTGTATGAGACTTTATTATAAATGTGAAATGGACATCAAGGACAATT 828
consensus_166#1      -------------------------------------------------