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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1702#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1869 fasta sequence
[TCTTCCTCGCCGATGAGATCCCTCCCCCAAGCTAGCACGCACGCAAACTAGGCCTTTCTACCACATCTCTCCAACAGTTACAGCCCCATGGATCCATAGCCAGTTAGCCACGACCCATATATTGTGTCTTCCTAAAGGAGTTCTCATCCGACCTGTGGTATCGCAGAAACCTCATCTCCACCTTCCATCGCCATAGCCAGAGTCGCCGGAGGAGTTGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTTTGTCACCTGAGGGGTGATCTGATCAGAGGAGATCGACGACGACGACGACGACGACGACGGCGAGGCAGGAGGACACGGTGCGCGTGAACATCGAGACGATGCTGGAGCATCTGACCACGCCGGCGGCGAGGCTGGGCGACGGCTACTCCATCTACCGTGTCCCGGCGAACGTCGACAGGAAGCACTACGAGCCGAGGCTGGTCTCCGTCGGCCCGTACCACCGGAGCAAGCACCACCTCAGCGCCATGGAGGACCGGAAGCGCCTCTACCTCCTCCGGTTCCTCGACGACGGTGGCGAGAGCGGCCACCGCCGCGGACTTCTGCTCCAGGACTGCATCGACAGGGTGCGCGAGCTCGAGCCGCGGGCGCGCGCGTGCTACTTCGAGAGCCCGGCCACCGGTGACGACGGGGAAGACGACGACGGCGACATGTTCGTCGAAATGCTCCTCCTCGACGGCTGCTTCGTGGTCCAGTTCTTCATCCAGTGGTTCTCCGGCGTCGCCGACCCCATCTTCAACGTCGGCTGGAACCTCCCGCTGCTGCACACCGACCTGCTCATGCTCGAGAACCAGATCCCCTACTTCATCCTCCTCGCGCTCTACGACGCCTACACGCATGACGGCGACGGCGACCTCGACCGGCCGGCGCGGCGGCCCAAGCCGTCGCTGACGAGCATCATCACCGCCTACTTCAGCCAGAAGGAAGGTCGGCAGCCGGCGGCGACGGAGACGGCGCAGCTGCAGGAGGAGGACGACATCGACCACCTCCTCCACCTCTACCACTCCACCTTCGTCAAGCCACCCGATCACCTGCCGGCGCGGCGGCACCGCCACGGCGGCGGCGGCAGCAGACCGCCGAGGACGATCCGCTGCGCCAAGGAGCTGGCCATGCACGGGGTGAGGTTCGTGCCCAAGGTCGGGACGAGCAACATCCTCGACGTCGCGTTCCACGACGGCGTGTTCGAGATCCCGCGCGTCGCCGTCGACGACTCCACCTGCACCCGCTTCATGAACCTCGCCGCCTTTGAGCAGTGCCGCGGCGGCGACGCCGAGACACCGGCGGCGGGGAAGCACCTGACCAGCTACGTGGTGCTGATGGACTACCTGATCAACACGGCGGAGGACGTGGTGATCCTGGAGCGCGCCGACGTGATGGAGAACAATCTGGCGAACGAGGAGGCGGCGGCGGCGTTCTTCAACCAGCTCCGCGTCTGCTCCTACATCGACTACGACGACCACTACCTGGCGCCGGTGTACCGCGACGTCGACGCCTTCTGCCGCCGCAAGTGGCCCAAGTACAAGGCCAAATTCCGCCGGGACTACCTCAACAGCCCGTGGGCGATCGTCGGCTTCTGCTTCGCCACCACCTTCGCCGTCGTCACCTTCTTCAACACCATCGTCAACATACTCAAGACGTTCTTCCATGTCTTGCATTGATCATCCAATGATCGATATGTGCAGTGCCTTGCTCACTGCAGAGAATTATTATCTTTGTTTTAAATCTATCTATCGATCTGTTCTTCTACCGCCATAAGTAAAAAAACATAAGACATGTATTGAAGACGTTAATCATAGACATGTCTACATATTGCTTATTGGAGAC]
[+] EMBL AK070361 [TCTTCCTCGCCGATGAGATCCCTCCCCCAAGCTAGCACGCACGCAAACTAGGCCTTTCTACCACATCTCTCCAACAGTTACAGCCCCATGGATCCATAGCCAGTTAGCCACGACCCATATATTGTGTCTTCCTAAAGGAGTTCTCATCCGACCTGTGGTATCGCAGAAACCTCATCTCCACCTTCCATCGCCATAGCCAGAGTCGCCGGAGGAGTTGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTTTGTCACCTGAGGGGTGATCTGATCAGAGGAGATCGACGACGACGACGACGACGACGACGGCGAGGCAGGAGGACACGGTGCGCGTGAACATCGAGACGATGCTGGAGCATCTGACCACGCCGGCGGCGAGGCTGGGCGACGGCTACTCCATCTACCGTGTCCCGGCGAACGTCGACAGGAAGCACTACGAGCCGAGGCTGGTCTCCGTCGGCCCGTACCACCGGAGCAAGCACCACCTCAGCGCCATGGAGGACCGGAAGCGCCTCTACCTCCTCCGGTTCCTCGACGACGGTGGCGAGAGCGGCCACCGCCGCGGACTTCTGCTCCAGGACTGCATCGACAGGGTGCGCGAGCTCGAGCCGCGGGCGCGCGCGTGCTACTTCGAGAGCCCGGCCACCGGTGACGACGGGGAAGACGACGACGGCGACATGTTCGTCGAAATGCTCCTCCTCGACGGCTGCTTCGTGGTCCAGTTCTTCATCCAGTGGTTCTCCGGCGTCGCCGACCCCATCTTCAACGTCGGCTGGAACCTCCCGCTGCTGCACACCGACCTGCTCATGCTCGAGAACCAGATCCCCTACTTCATCCTCCTCGCGCTCTACGACGCCTACACGCATGACGGCGACGGCGACCTCGACCGGCCGGCGCGGCGGCCCAAGCCGTCGCTGACGAGCATCATCACCGCCTACTTCAGCCAGAAGGAAGGTCGGCAGCCGGCGGCGACGGAGACGGCGCAGCTGCAGGAGGAGGACGACATCGACCACCTCCTCCACCTCTACCACTCCACCTTCGTCAAGCCACCCGATCACCTGCCGGCGCGGCGGCACCGCCACGGCGGCGGCGGCAGCAGACCGCCGAGGACGATCCGCTGCGCCAAGGAGCTGGCCATGCACGGGGTGAGGTTCGTGCCCAAGGTCGGGACGAGCAACATCCTCGACGTCGCGTTCCACGACGGCGTGTTCGAGATCCCGCGCGTCGCCGTCGACGACTCCACCTGCACCCGCTTCATGAACCTCGCCGCCTTTGAGCAGTGCCGCGGCGGCGACGCCGAGACACCGGCGGCGGGGAAGCACCTGACCAGCTACGTGGTGCTGATGGACTACCTGATCAACACGGCGGAGGACGTGGTGATCCTGGAGCGCGCCGACGTGATGGAGAACAATCTGGCGAACGAGGAGGCGGCGGCGGCGTTCTTCAACCAGCTCCGCGTCTGCTCCTACATCGACTACGACGACCACTACCTGGCGCCGGTGTACCGCGACGTCGACGCCTTCTGCCGCCGCAAGTGGCCCAAGTACAAGGCCAAATTCCGCCGGGACTACCTCAACAGCCCGTGGGCGATCGTCGGCTTCTGCTTCGCCACCACCTTCGCCGTCGTCACCTTCTTCAACACCATCGTCAACATACTCAAGACGTTCTTCCATGTCTTGCATTGATCATCCAATGATCGATATGTGCAGTGCCTTGCTCACTGCAGAGAATTATTATCTTTGTTTTAAATCTATCTATCGATCTGTTCTTCTACCGCCATAAGTAAAAAAACATAAGACATGTATTGAAGACGTTAATCATAGACATGTCTACATATTGCTTATTGGAGAC]
consensusID : consensus_1702#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence
[GCACGGGGTGAAGTTCGTGCGCAAGCCGGAGACGACCAACGTCCTCGACGTCACGTTCTGCAGGGACACCGGCGTCTTCCAGATCCCTCGTGTCGCCATCGAGGACTCCACCTGCATCAGGTACATGAACCTCGTCGCCTTCGAGCAGTGCCGCGGCGAGGCGGCGGTGGCGGAGAAGCACCTGACCAGCTACGTGGTGCTCATGGACTACCTGATCAACACGGCGGAGGACGTGGTGATCCTGGACAGGGCGGACGTGATGGAGAACAAACTGGCCAACGAGGAGGAGGCCGCCAAGTTCTTCAACCAGCTCCGCCTCAGCTCCTACATCAACTACGACGACCACTACCTGGCGCCGGTGTACCGCGACGTCGACGCCTTCTGCCGCCGCAAGTGGCCAAAATACAAGGCCAAATTCCGCCGGGACTACCTCAACAGCCCGTGGGCGATTTTCGGTTTCTGCTTGGCCACCACATTCGCCGTCATCACCTTGTTCAACACCATCGTCACCATATTGCAGACGTTTTTCCATCTCTTTAAATGATCATTAAATCCATCGATATATGCAAACTGATCAATATCGTTCTATCAATTAATCTCTCTAGCTACATCCATATGTAATTTACATATCTACTTTGTTAATTCTCACAGTTGCTATTTTTTTTTAAAAAAAAA]
[+] EMBL CA756925 [GCACGGGGTGAAGTTCGTGCGCAAGCCGGAGACGACCAACGTCCTCGACGTCACGTTCTGCAGGGACACCGGCGTCTTCCAGATCCCTCGTGTCGCCATCGAGGACTCCACCTGCATCAGGTACATGAACCTCGTCGCCTTCGAGCAGTGCCGCGGCGAGGCGGCGGTGGCGGAGAAGCACCTGACCAGCTACGTGGTGCTCATGGACTACCTGATCAACACGGCGGAGGACGTGGTGATCCTGGACAGGGCGGACGTGATGGAGAACAAACTGGCCAACGAGGAGGAGGCCGCCAAGTTCTTCAACCAGCTCCGCCTCAGCTCCTACATCAACTACGACGACCACTACCTGGCGCCGGTGTACCGCGACGTCGACGCCTTCTGCCGCCGCAAGTGGCCAAAATACAAGGCCAAATTCCGCCGGGACTACCTCAACAGCCCGTGGGCGATTTTCGGTTTCTGCTTGGCCACCACATTCGCCGTCATCACCTTGTTCAACACCATCGTCACCATATTGCAGACGTTTTTCCATCTCTTTAAATGATCATTAAATCCATCGATATATGCAAACTGATCAATATCGTTCTATCAATTAATCTCTCTAGCTACATCCATATGTAATTTACATATCTACTTTGTTAATTCTCACAGTTGCTATTTTTTTTTAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1702#0 TCTTCCTCGCCGATGAGATCCCTCCCCCAAGCTAGCACGCACGCAAACTAGGCCTTTCTA 60
consensus_1702#1 ------------------------------------------------------------
consensus_1702#0 CCACATCTCTCCAACAGTTACAGCCCCATGGATCCATAGCCAGTTAGCCACGACCCATAT 120
consensus_1702#1 ------------------------------------------------------------
consensus_1702#0 ATTGTGTCTTCCTAAAGGAGTTCTCATCCGACCTGTGGTATCGCAGAAACCTCATCTCCA 180
consensus_1702#1 ------------------------------------------------------------
consensus_1702#0 CCTTCCATCGCCATAGCCAGAGTCGCCGGAGGAGTTGGAGAAGAAGAAGAAGAAGAAGAA 240
consensus_1702#1 ------------------------------------------------------------
consensus_1702#0 GAAGAAGAAGAAGAAGAAGAAGAAGTTTGTCACCTGAGGGGTGATCTGATCAGAGGAGAT 300
consensus_1702#1 ------------------------------------------------------------
consensus_1702#0 CGACGACGACGACGACGACGACGACGGCGAGGCAGGAGGACACGGTGCGCGTGAACATCG 360
consensus_1702#1 ------------------------------------------------------------
consensus_1702#0 AGACGATGCTGGAGCATCTGACCACGCCGGCGGCGAGGCTGGGCGACGGCTACTCCATCT 420
consensus_1702#1 ------------------------------------------------------------
consensus_1702#0 ACCGTGTCCCGGCGAACGTCGACAGGAAGCACTACGAGCCGAGGCTGGTCTCCGTCGGCC 480
consensus_1702#1 ------------------------------------------------------------
consensus_1702#0 CGTACCACCGGAGCAAGCACCACCTCAGCGCCATGGAGGACCGGAAGCGCCTCTACCTCC 540
consensus_1702#1 ------------------------------------------------------------
consensus_1702#0 TCCGGTTCCTCGACGACGGTGGCGAGAGCGGCCACCGCCGCGGACTTCTGCTCCAGGACT 600
consensus_1702#1 ------------------------------------------------------------
consensus_1702#0 GCATCGACAGGGTGCGCGAGCTCGAGCCGCGGGCGCGCGCGTGCTACTTCGAGAGCCCGG 660
consensus_1702#1 ------------------------------------------------------------
consensus_1702#0 CCACCGGTGACGACGGGGAAGACGACGACGGCGACATGTTCGTCGAAATGCTCCTCCTCG 720
consensus_1702#1 ------------------------------------------------------------
consensus_1702#0 ACGGCTGCTTCGTGGTCCAGTTCTTCATCCAGTGGTTCTCCGGCGTCGCCGACCCCATCT 780
consensus_1702#1 ------------------------------------------------------------
consensus_1702#0 TCAACGTCGGCTGGAACCTCCCGCTGCTGCACACCGACCTGCTCATGCTCGAGAACCAGA 840
consensus_1702#1 ------------------------------------------------------------
consensus_1702#0 TCCCCTACTTCATCCTCCTCGCGCTCTACGACGCCTACACGCATGACGGCGACGGCGACC 900
consensus_1702#1 ------------------------------------------------------------
consensus_1702#0 TCGACCGGCCGGCGCGGCGGCCCAAGCCGTCGCTGACGAGCATCATCACCGCCTACTTCA 960
consensus_1702#1 ------------------------------------------------------------
consensus_1702#0 GCCAGAAGGAAGGTCGGCAGCCGGCGGCGACGGAGACGGCGCAGCTGCAGGAGGAGGACG 1020
consensus_1702#1 ------------------------------------------------------------
consensus_1702#0 ACATCGACCACCTCCTCCACCTCTACCACTCCACCTTCGTCAAGCCACCCGATCACCTGC 1080
consensus_1702#1 ------------------------------------------------------------
consensus_1702#0 CGGCGCGGCGGCACCGCCACGGCGGCGGCGGCAGCAGACCGCCGAGGACGATCCGCTGCG 1140
consensus_1702#1 ------------------------------------------------------------
consensus_1702#0 CCAAGGAGCTGGCCATGCACGGGGTGAGGTTCGTGCCCAAGGTCGGGACGAGCAACATCC 1200
consensus_1702#1 ----------------GCACGGGGTGAAGTTCGTGCGCAAGCCGGAGACGACCAACGTCC 44
*********** ******** **** * ***** **** ***
consensus_1702#0 TCGACGTCGCGTTCCACGA------CGGCGTGTTCGAGATCCCGCGCGTCGCCGTCGACG 1254
consensus_1702#1 TCGACGTCACGTTCTGCAGGGACACCGGCGTCTTCCAGATCCCTCGTGTCGCCATCGAGG 104
******** ***** * ****** *** ******* ** ****** **** *
consensus_1702#0 ACTCCACCTGCACCCGCTTCATGAACCTCGCCGCCTTTGAGCAGTGCCGCGGCGGCGACG 1314
consensus_1702#1 ACTCCACCTGCATCAGGTACATGAACCTCGTCGCCTTCGAGCAGTGCCGCGGCG------ 158
************ * * * *********** ****** ****************
consensus_1702#0 CCGAGACACCGGCGGCGGGGAAGCACCTGACCAGCTACGTGGTGCTGATGGACTACCTGA 1374
consensus_1702#1 ---AGGCGGCGGTGGCGGAGAAGCACCTGACCAGCTACGTGGTGCTCATGGACTACCTGA 215
** * *** ***** *************************** *************
consensus_1702#0 TCAACACGGCGGAGGACGTGGTGATCCTGGAGCGCGCCGACGTGATGGAGAACAATCTGG 1434
consensus_1702#1 TCAACACGGCGGAGGACGTGGTGATCCTGGACAGGGCGGACGTGATGGAGAACAAACTGG 275
******************************* * ** ***************** ****
consensus_1702#0 CGAACGAGGAGGCGGCGGCGGCGTTCTTCAACCAGCTCCGCGTCTGCTCCTACATCGACT 1494
consensus_1702#1 CCAACGAGGAGGAGGCCGCCAAGTTCTTCAACCAGCTCCGCCTCAGCTCCTACATCAACT 335
* ********** *** ** ******************* ** *********** ***
consensus_1702#0 ACGACGACCACTACCTGGCGCCGGTGTACCGCGACGTCGACGCCTTCTGCCGCCGCAAGT 1554
consensus_1702#1 ACGACGACCACTACCTGGCGCCGGTGTACCGCGACGTCGACGCCTTCTGCCGCCGCAAGT 395
************************************************************
consensus_1702#0 GGCCCAAGTACAAGGCCAAATTCCGCCGGGACTACCTCAACAGCCCGTGGGCGATCGTCG 1614
consensus_1702#1 GGCCAAAATACAAGGCCAAATTCCGCCGGGACTACCTCAACAGCCCGTGGGCGATTTTCG 455
**** ** *********************************************** ***
consensus_1702#0 GCTTCTGCTTCGCCACCACCTTCGCCGTCGTCACCTTCTTCAACACCATCGTCAACATAC 1674
consensus_1702#1 GTTTCTGCTTGGCCACCACATTCGCCGTCATCACCTTGTTCAACACCATCGTCACCATAT 515
* ******** ******** ********* ******* **************** ****
consensus_1702#0 TCAAGACGTTCTTCCATGTCTTGCATTGATCATCCAATG-ATCGATATGTGCAGTGCCTT 1733
consensus_1702#1 TGCAGACGTTTTTCCATCTCTTTAAATGATCATTAAATCCATCGATATATGCAA------ 569
* ******* ****** **** * ******* *** ******** ****
consensus_1702#0 GCTCACTGCAGAGAATTATTATCTTTGTTTTAAATCTATCTATCGATCTGTTCTTCTACC 1793
consensus_1702#1 ----ACTG------ATCAATATCGTT---------CTATCAATTAATCTCTCTAGCTACA 610
**** ** * **** ** ***** ** **** * ****
consensus_1702#0 GCCATAAGTAAAAAAACATAAGACATGTATTGAAGACGTTAATCATAGACATGTCTACAT 1853
consensus_1702#1 TCCATATGTAA------TTTACATATCTACTT----TGTTAATTCTCACAGTTGCTATTT 660
***** **** * * * ** ** * ****** * * *** *
consensus_1702#0 ATTGCTTATTGGAGAC 1869
consensus_1702#1 TTTTTTAAAAAAAAA- 675
** * * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||