cluster # 1828

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Oryza sativa
cluster # 1828 cluster # 1828 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1828#0 length = 799 sequences # 1

consensus_1828#1 length = 588 sequences # 1

consensusID : consensus_1828#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 799
fasta sequence

                              [ATCGCATGTTGAGGACAAGGTGAGTAAGGGATTGGAGGAAACTCGTGCAGAAGATGTGGATGCAAATCATATGGACTTGGATGAATCAGAGGCTGTGGATGAGGATGCGAAAGGCAAGAGCTTTGGTGAATCGGAGATGGGGTTTGTGTCTGTGGAAGAAGTTTCTGTTACACATGAGGTGATGCTTCCTAATTACGAGGAGGTGGCGACAGAAGAATGAGTTCTCACTTTCCTGACATTCAGAGGTTCTGATGTGAAATGCCTACTGGCCTCCCCACTACGGCAATGTCATTGTGGATCTGACGAGCTCTCCCTCAGAAATGCACTCCAATTCGATGGGTATTTTCATGTCAAGCCCGCGCATCAGCGATGTAGCTACCTGGTGGTATATTCTAGTAAAGATCGGCATTAATCCCACTTGTAACGTATCCTTGTTCAAGGACGGTTAAACGGTTAGTGCTTAATTTAGATGCCCTTTTGACGCAATCACTTTGCTGGGCTCCTGTTGGATAGAACAAAATTGTGCATTCTCATCCTCTGTTTGCAGTGATAGTTCAGTACTTCAGTCGTAATGTAGATTTTTCTTCCATTGTCATGTCTTCGGNTATACCAATGAGTGAGAGGTAATGGATTTGGGAAGATATCCCTGTGACCTGGCTGGCATTAGATTATAGCTGACACAACACTAGACATCTGNTCATGTGTGGAGAAAACCACTAGAGATGTGGTAGAAAAGCTGGGTGCACGGTTGGATTGTTGGAAAGCTGGGGGCTGCTNAAGGTTTCATAAGCCCAANATT]

[+] EMBL CA766124             [ATCGCATGTTGAGGACAAGGTGAGTAAGGGATTGGAGGAAACTCGTGCAGAAGATGTGGATGCAAATCATATGGACTTGGATGAATCAGAGGCTGTGGATGAGGATGCGAAAGGCAAGAGCTTTGGTGAATCGGAGATGGGGTTTGTGTCTGTGGAAGAAGTTTCTGTTACACATGAGGTGATGCTTCCTAATTACGAGGAGGTGGCGACAGAAGAATGAGTTCTCACTTTCCTGACATTCAGAGGTTCTGATGTGAAATGCCTACTGGCCTCCCCACTACGGCAATGTCATTGTGGATCTGACGAGCTCTCCCTCAGAAATGCACTCCAATTCGATGGGTATTTTCATGTCAAGCCCGCGCATCAGCGATGTAGCTACCTGGTGGTATATTCTAGTAAAGATCGGCATTAATCCCACTTGTAACGTATCCTTGTTCAAGGACGGTTAAACGGTTAGTGCTTAATTTAGATGCCCTTTTGACGCAATCACTTTGCTGGGCTCCTGTTGGATAGAACAAAATTGTGCATTCTCATCCTCTGTTTGCAGTGATAGTTCAGTACTTCAGTCGTAATGTAGATTTTTCTTCCATTGTCATGTCTTCGGNTATACCAATGAGTGAGAGGTAATGGATTTGGGAAGATATCCCTGTGACCTGGCTGGCATTAGATTATAGCTGACACAACACTAGACATCTGNTCATGTGTGGAGAAAACCACTAGAGATGTGGTAGAAAAGCTGGGTGCACGGTTGGATTGTTGGAAAGCTGGGGGCTGCTNAAGGTTTCATAAGCCCAANATT]




>consensus_1828#0
ATCGCATGTTGAGGACAAGGTGAGTAAGGGATTGGAGGAAACTCGTGCAGAAGATGTGGA
TGCAAATCATATGGACTTGGATGAATCAGAGGCTGTGGATGAGGATGCGAAAGGCAAGAG
CTTTGGTGAATCGGAGATGGGGTTTGTGTCTGTGGAAGAAGTTTCTGTTACACATGAGGT
GATGCTTCCTAATTACGAGGAGGTGGCGACAGAAGAATGAGTTCTCACTTTCCTGACATT
CAGAGGTTCTGATGTGAAATGCCTACTGGCCTCCCCACTACGGCAATGTCATTGTGGATC
TGACGAGCTCTCCCTCAGAAATGCACTCCAATTCGATGGGTATTTTCATGTCAAGCCCGC
GCATCAGCGATGTAGCTACCTGGTGGTATATTCTAGTAAAGATCGGCATTAATCCCACTT
GTAACGTATCCTTGTTCAAGGACGGTTAAACGGTTAGTGCTTAATTTAGATGCCCTTTTG
ACGCAATCACTTTGCTGGGCTCCTGTTGGATAGAACAAAATTGTGCATTCTCATCCTCTG
TTTGCAGTGATAGTTCAGTACTTCAGTCGTAATGTAGATTTTTCTTCCATTGTCATGTCT
TCGGNTATACCAATGAGTGAGAGGTAATGGATTTGGGAAGATATCCCTGTGACCTGGCTG
GCATTAGATTATAGCTGACACAACACTAGACATCTGNTCATGTGTGGAGAAAACCACTAG
AGATGTGGTAGAAAAGCTGGGTGCACGGTTGGATTGTTGGAAAGCTGGGGGCTGCTNAAG
GTTTCATAAGCCCAANATT

consensusID : consensus_1828#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 588
fasta sequence

                              [GAGTCGGGGGATGCAGATGCTGATGCGAAGAACAGTAACTTGGAAAAGTCGGAGGCCGGGGGTGCAGATTTGAGGAGCAATTGCTTGGAGGAGCTGGTGTCGGGTGATGCGGATGTACGGGGGACGAGTGCGGAGGAATTGGAATCGCATGTTGAGGACAAGGTGAGTAAGGGATTGGAGGAAACTCGTGCAGAAGATGTGGATGCAAATCATATGGACTTGGATGAATCAGAGGCTGTGGATGAGGATGCGAAAGGCAAGAGCTTTGGTGAATCGGAGATGGGGTTTGTGTCTGTGGAAGAAGTTTCTGTTACACATGAGGTGATGCTTCCTAATTACGAGGAGGTGGCGACAGAGGGAGATGGCGATACAGCAATGGCTGCGGTAGAAAATGATGCAGGCTCATTGGCAGAAACAGTAGTGATGACACATGAGGAGTTTGTGGCAGTGCCTGAGGATGATGAAGAAGAGGCAGATGGGGATGAGGAGAATGATGCAACAGGGTTGAGCTTGGGCATCGGCTCCGCCAATGATTATGACAGTACAGATGGTGAAGAGGATGCAAATGTGGAGAATCTGGGTGAGGGT]

[+] EMBL CA756475             [GAGTCGGGGGATGCAGATGCTGATGCGAAGAACAGTAACTTGGAAAAGTCGGAGGCCGGGGGTGCAGATTTGAGGAGCAATTGCTTGGAGGAGCTGGTGTCGGGTGATGCGGATGTACGGGGGACGAGTGCGGAGGAATTGGAATCGCATGTTGAGGACAAGGTGAGTAAGGGATTGGAGGAAACTCGTGCAGAAGATGTGGATGCAAATCATATGGACTTGGATGAATCAGAGGCTGTGGATGAGGATGCGAAAGGCAAGAGCTTTGGTGAATCGGAGATGGGGTTTGTGTCTGTGGAAGAAGTTTCTGTTACACATGAGGTGATGCTTCCTAATTACGAGGAGGTGGCGACAGAGGGAGATGGCGATACAGCAATGGCTGCGGTAGAAAATGATGCAGGCTCATTGGCAGAAACAGTAGTGATGACACATGAGGAGTTTGTGGCAGTGCCTGAGGATGATGAAGAAGAGGCAGATGGGGATGAGGAGAATGATGCAACAGGGTTGAGCTTGGGCATCGGCTCCGCCAATGATTATGACAGTACAGATGGTGAAGAGGATGCAAATGTGGAGAATCTGGGTGAGGGT]




>consensus_1828#1
GAGTCGGGGGATGCAGATGCTGATGCGAAGAACAGTAACTTGGAAAAGTCGGAGGCCGGG
GGTGCAGATTTGAGGAGCAATTGCTTGGAGGAGCTGGTGTCGGGTGATGCGGATGTACGG
GGGACGAGTGCGGAGGAATTGGAATCGCATGTTGAGGACAAGGTGAGTAAGGGATTGGAG
GAAACTCGTGCAGAAGATGTGGATGCAAATCATATGGACTTGGATGAATCAGAGGCTGTG
GATGAGGATGCGAAAGGCAAGAGCTTTGGTGAATCGGAGATGGGGTTTGTGTCTGTGGAA
GAAGTTTCTGTTACACATGAGGTGATGCTTCCTAATTACGAGGAGGTGGCGACAGAGGGA
GATGGCGATACAGCAATGGCTGCGGTAGAAAATGATGCAGGCTCATTGGCAGAAACAGTA
GTGATGACACATGAGGAGTTTGTGGCAGTGCCTGAGGATGATGAAGAAGAGGCAGATGGG
GATGAGGAGAATGATGCAACAGGGTTGAGCTTGGGCATCGGCTCCGCCAATGATTATGAC
AGTACAGATGGTGAAGAGGATGCAAATGTGGAGAATCTGGGTGAGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1828#0      ------------------------------------------------------------
consensus_1828#1      GAGTCGGGGGATGCAGATGCTGATGCGAAGAACAGTAACTTGGAAAAGTCGGAGGCCGGG 60
                                                                                  

consensus_1828#0      ------------------------------------------------------------
consensus_1828#1      GGTGCAGATTTGAGGAGCAATTGCTTGGAGGAGCTGGTGTCGGGTGATGCGGATGTACGG 120
                                                                                  

consensus_1828#0      -----------------------ATCGCATGTTGAGGACAAGGTGAGTAAGGGATTGGAG 37
consensus_1828#1      GGGACGAGTGCGGAGGAATTGGAATCGCATGTTGAGGACAAGGTGAGTAAGGGATTGGAG 180
                                             *************************************

consensus_1828#0      GAAACTCGTGCAGAAGATGTGGATGCAAATCATATGGACTTGGATGAATCAGAGGCTGTG 97
consensus_1828#1      GAAACTCGTGCAGAAGATGTGGATGCAAATCATATGGACTTGGATGAATCAGAGGCTGTG 240
                      ************************************************************

consensus_1828#0      GATGAGGATGCGAAAGGCAAGAGCTTTGGTGAATCGGAGATGGGGTTTGTGTCTGTGGAA 157
consensus_1828#1      GATGAGGATGCGAAAGGCAAGAGCTTTGGTGAATCGGAGATGGGGTTTGTGTCTGTGGAA 300
                      ************************************************************

consensus_1828#0      GAAGTTTCTGTTACACATGAGGTGATGCTTCCTAATTACGAGGAGGTGGCGACAGAAGAA 217
consensus_1828#1      GAAGTTTCTGTTACACATGAGGTGATGCTTCCTAATTACGAGGAGGTGGCGACAGAGGGA 360
                      ******************************************************** * *

consensus_1828#0      TGAGTTCTCACTTTCCTGACATTCAGAGGTTCTGATGTGAAATGCCTACTGGCCTCCCCA 277
consensus_1828#1      GATGGCGATACAGCAATGGCTGCGGTAGAAAATGATGC---AGGCTCATTGGCAGAAACA 417
                         *     **     ** *      **    *****    * **  * ****     **

consensus_1828#0      CTACGGCAATGTCAT-TGTGGATCTGACGAGCTCTCCCTCAGAA--ATGCACTCCAATTC 334
consensus_1828#1      GTA--GTGATGACACATGAGGAGTTTGTG-GCAGTGCCTGAGGATGATGAAGAAGAGGCA 474
                       **  *  *** **  ** ***  *   * **  * *** ** *  *** *    *    

consensus_1828#0      GATGGGTATTTTCATGTCAAGCCCGCGCATCAGCGATGTAGCTACCTGGTGGTATATTCT 394
consensus_1828#1      GATGGGGATG-----AGGAGAATGATGCAACAGGGTTG-AGCT---TGGGCATCGGCTCC 525
                      ****** **         *       *** *** * ** ****   ***   *    ** 

consensus_1828#0      AGTAAAGATCGGCATTAATCCCACTTGTAACGTATCCTTGTTCAAGGACGGTTAAACGGT 454
consensus_1828#1      GCCAATGATTATGAC-AGTACAGATGGTGAAGAGGATGCAAATGTGGAGAATCTG--GGT 582
                         ** ***    *  * * *   * ** * *             ***   *     ***

consensus_1828#0      TAGTGCTTAATTTAGATGCCCTTTTGACGCAATCACTTTGCTGGGCTCCTGTTGGATAGA 514
consensus_1828#1      GAGGGT------------------------------------------------------ 588
                       ** *                                                       

consensus_1828#0      ACAAAATTGTGCATTCTCATCCTCTGTTTGCAGTGATAGTTCAGTACTTCAGTCGTAATG 574
consensus_1828#1      ------------------------------------------------------------
                                                                                  

consensus_1828#0      TAGATTTTTCTTCCATTGTCATGTCTTCGGNTATACCAATGAGTGAGAGGTAATGGATTT 634
consensus_1828#1      ------------------------------------------------------------
                                                                                  

consensus_1828#0      GGGAAGATATCCCTGTGACCTGGCTGGCATTAGATTATAGCTGACACAACACTAGACATC 694
consensus_1828#1      ------------------------------------------------------------
                                                                                  

consensus_1828#0      TGNTCATGTGTGGAGAAAACCACTAGAGATGTGGTAGAAAAGCTGGGTGCACGGTTGGAT 754
consensus_1828#1      ------------------------------------------------------------
                                                                                  

consensus_1828#0      TGTTGGAAAGCTGGGGGCTGCTNAAGGTTTCATAAGCCCAANATT 799
consensus_1828#1      ---------------------------------------------