cluster # 1846

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Oryza sativa
cluster # 1846 cluster # 1846 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1846#0 length = 1359 sequences # 1

consensus_1846#1 length = 397 sequences # 1

consensusID : consensus_1846#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1359
fasta sequence

                              [CACGCGCTCCCCTCGCACGCCACCGGACGAACACCTCGCCGACAACCTTTGCTCCGGCGACCGGAGGTCGGAGAGAGAGAAGAGAGATGAAGATGCCGGGGCGCCTGCTCGCCGCCGGAGCGGCGGCGCTGCTGGTGGCGGCGTCGGTGATGGTGGCGACGCTGCTGACGGCGCCGCTGCCGTTCCTGCCGTCGCTGATGCCGTGCCTGCCCGCGGTGACCGCGCCGTCGGGGTCCGGGTACTCGCCGCCGGGCCTCGCGGCCCTCGCCGACGCCGCCGTGAGGTACGCCACGACGCCGACCGTGCCGCAGCAGTCGCGCGCCGAGATCTCGCTGTCGCTGGCCGTGCTCCGCCGCCGCGCGCCGCTGCGGCTGCTGGTGTTCGGCCTGGGCCACGACTCGCCGCTGTGGCACGCGCTCAACCCGGGCGGCGCCACCGTGTTCCTCGAGGAGGACCCGTCCTGGTACAGCGTCGTGCGGGGCCAGTCGCCGTTCCTCCGCGGCCACCTCGTCGCCTACCGCACGCGCCTCGACCACGCCGACCGCCTCCTCGCCACCTACAAGGACCACCCCTCCTGCCTCCCCGGCGGCGGCGGCAATGGCGGCGGCGACGTGCCGCGCGTGCGGGGGAACGCGGAGTGCCCGCTGGCGCTGCACAACCTGCCGGCGGAGGTGTACGAGAAGGAGTGGGACATGGTGATGATCGACGCGCCCAAGGGGTACTTCGCGTCGGCGCCGGGGAGGATGGCGGCGGTGTGGACGGCGGCGGCCATGGCGCGCGGGCGGCGCGGCGAGGGCGACACCGACGTGTTCCTCCACGACGTCGACCGCCGCGTGGAGAAGGCCTACGCCGAGGAGTTCCTCTGCGAGAGGTTCCGCGTCGGCGCCACCGGCCGCCTCTGGCATTTCAGGATCCCGCCGGCGTCGCGCCGCGGGAACGGCACGGCGGCCGCCGGCGGCGCCGGCGCCGGCGATGGGCGGCGACCCTTCTGCTAAGGAAGTAAGGATTGCGATTTTTGGAGGGGCTTTTTTACAAAATGGCCTCGATTAAGCGGGTGAAATACAAATACTGCTACTACTACTACGAAAATACGATCGTCGTGTAGGAAATTTCCGGATTCCTCTATCCTCTGCCACTTGCAAATTCAAAACTTGGGATATTTTAAATTTGAGGTAAACATTCTGAACAGAGATAGATGCTAGAGAGTGATTTGAGTCTCTCGAGATCACTAAAGTTGGTGTGAACAACAACACGGTGTGTATCTCTTTTCAGTTTGTAATAATAGAAACAATGAGGTGATTTTGTTTTTTTTTTTTGGTATGAGTACATACTAATTTTTGAATAACATTGGTACATCAG]

[+] EMBL AK108872             [CACGCGCTCCCCTCGCACGCCACCGGACGAACACCTCGCCGACAACCTTTGCTCCGGCGACCGGAGGTCGGAGAGAGAGAAGAGAGATGAAGATGCCGGGGCGCCTGCTCGCCGCCGGAGCGGCGGCGCTGCTGGTGGCGGCGTCGGTGATGGTGGCGACGCTGCTGACGGCGCCGCTGCCGTTCCTGCCGTCGCTGATGCCGTGCCTGCCCGCGGTGACCGCGCCGTCGGGGTCCGGGTACTCGCCGCCGGGCCTCGCGGCCCTCGCCGACGCCGCCGTGAGGTACGCCACGACGCCGACCGTGCCGCAGCAGTCGCGCGCCGAGATCTCGCTGTCGCTGGCCGTGCTCCGCCGCCGCGCGCCGCTGCGGCTGCTGGTGTTCGGCCTGGGCCACGACTCGCCGCTGTGGCACGCGCTCAACCCGGGCGGCGCCACCGTGTTCCTCGAGGAGGACCCGTCCTGGTACAGCGTCGTGCGGGGCCAGTCGCCGTTCCTCCGCGGCCACCTCGTCGCCTACCGCACGCGCCTCGACCACGCCGACCGCCTCCTCGCCACCTACAAGGACCACCCCTCCTGCCTCCCCGGCGGCGGCGGCAATGGCGGCGGCGACGTGCCGCGCGTGCGGGGGAACGCGGAGTGCCCGCTGGCGCTGCACAACCTGCCGGCGGAGGTGTACGAGAAGGAGTGGGACATGGTGATGATCGACGCGCCCAAGGGGTACTTCGCGTCGGCGCCGGGGAGGATGGCGGCGGTGTGGACGGCGGCGGCCATGGCGCGCGGGCGGCGCGGCGAGGGCGACACCGACGTGTTCCTCCACGACGTCGACCGCCGCGTGGAGAAGGCCTACGCCGAGGAGTTCCTCTGCGAGAGGTTCCGCGTCGGCGCCACCGGCCGCCTCTGGCATTTCAGGATCCCGCCGGCGTCGCGCCGCGGGAACGGCACGGCGGCCGCCGGCGGCGCCGGCGCCGGCGATGGGCGGCGACCCTTCTGCTAAGGAAGTAAGGATTGCGATTTTTGGAGGGGCTTTTTTACAAAATGGCCTCGATTAAGCGGGTGAAATACAAATACTGCTACTACTACTACGAAAATACGATCGTCGTGTAGGAAATTTCCGGATTCCTCTATCCTCTGCCACTTGCAAATTCAAAACTTGGGATATTTTAAATTTGAGGTAAACATTCTGAACAGAGATAGATGCTAGAGAGTGATTTGAGTCTCTCGAGATCACTAAAGTTGGTGTGAACAACAACACGGTGTGTATCTCTTTTCAGTTTGTAATAATAGAAACAATGAGGTGATTTTGTTTTTTTTTTTTGGTATGAGTACATACTAATTTTTGAATAACATTGGTACATCAG]




>consensus_1846#0
CACGCGCTCCCCTCGCACGCCACCGGACGAACACCTCGCCGACAACCTTTGCTCCGGCGA
CCGGAGGTCGGAGAGAGAGAAGAGAGATGAAGATGCCGGGGCGCCTGCTCGCCGCCGGAG
CGGCGGCGCTGCTGGTGGCGGCGTCGGTGATGGTGGCGACGCTGCTGACGGCGCCGCTGC
CGTTCCTGCCGTCGCTGATGCCGTGCCTGCCCGCGGTGACCGCGCCGTCGGGGTCCGGGT
ACTCGCCGCCGGGCCTCGCGGCCCTCGCCGACGCCGCCGTGAGGTACGCCACGACGCCGA
CCGTGCCGCAGCAGTCGCGCGCCGAGATCTCGCTGTCGCTGGCCGTGCTCCGCCGCCGCG
CGCCGCTGCGGCTGCTGGTGTTCGGCCTGGGCCACGACTCGCCGCTGTGGCACGCGCTCA
ACCCGGGCGGCGCCACCGTGTTCCTCGAGGAGGACCCGTCCTGGTACAGCGTCGTGCGGG
GCCAGTCGCCGTTCCTCCGCGGCCACCTCGTCGCCTACCGCACGCGCCTCGACCACGCCG
ACCGCCTCCTCGCCACCTACAAGGACCACCCCTCCTGCCTCCCCGGCGGCGGCGGCAATG
GCGGCGGCGACGTGCCGCGCGTGCGGGGGAACGCGGAGTGCCCGCTGGCGCTGCACAACC
TGCCGGCGGAGGTGTACGAGAAGGAGTGGGACATGGTGATGATCGACGCGCCCAAGGGGT
ACTTCGCGTCGGCGCCGGGGAGGATGGCGGCGGTGTGGACGGCGGCGGCCATGGCGCGCG
GGCGGCGCGGCGAGGGCGACACCGACGTGTTCCTCCACGACGTCGACCGCCGCGTGGAGA
AGGCCTACGCCGAGGAGTTCCTCTGCGAGAGGTTCCGCGTCGGCGCCACCGGCCGCCTCT
GGCATTTCAGGATCCCGCCGGCGTCGCGCCGCGGGAACGGCACGGCGGCCGCCGGCGGCG
CCGGCGCCGGCGATGGGCGGCGACCCTTCTGCTAAGGAAGTAAGGATTGCGATTTTTGGA
GGGGCTTTTTTACAAAATGGCCTCGATTAAGCGGGTGAAATACAAATACTGCTACTACTA
CTACGAAAATACGATCGTCGTGTAGGAAATTTCCGGATTCCTCTATCCTCTGCCACTTGC
AAATTCAAAACTTGGGATATTTTAAATTTGAGGTAAACATTCTGAACAGAGATAGATGCT
AGAGAGTGATTTGAGTCTCTCGAGATCACTAAAGTTGGTGTGAACAACAACACGGTGTGT
ATCTCTTTTCAGTTTGTAATAATAGAAACAATGAGGTGATTTTGTTTTTTTTTTTTGGTA
TGAGTACATACTAATTTTTGAATAACATTGGTACATCAG

consensusID : consensus_1846#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence

                              [CCCGGNGCCCCGGGCCCCGGCAATGGGCGGCGACCCTTCTGCCTAGGAAGTAAGGATTGCGATTTTTGGAGGGGCTTTTTTACAAAATGGCCNCGATTAAGCGGGTGAAATACAAATACTGCTACTACTACTACGAAAATACGATCGTCGTGTAGGAAATTTCCGGATTCCNCTANCCTCTGCCACTTGCAAATTCAAAACTTGGGATATTTTAAATTTGAGGTAAACATTCTGAACAGAGATAGATGCTAGAGAGTGATTTGAGTCNCNCGAGATCACTAAAGTTGGTGTGAACAACAACACGGTGTGTATCNCTTTTCAGTTTGTAATAATAGAAACAATGAGGTGATTTTGTTTTTTTTTTTAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C99607               [CCCGGNGCCCCGGGCCCCGGCAATGGGCGGCGACCCTTCTGCCTAGGAAGTAAGGATTGCGATTTTTGGAGGGGCTTTTTTACAAAATGGCCNCGATTAAGCGGGTGAAATACAAATACTGCTACTACTACTACGAAAATACGATCGTCGTGTAGGAAATTTCCGGATTCCNCTANCCTCTGCCACTTGCAAATTCAAAACTTGGGATATTTTAAATTTGAGGTAAACATTCTGAACAGAGATAGATGCTAGAGAGTGATTTGAGTCNCNCGAGATCACTAAAGTTGGTGTGAACAACAACACGGTGTGTATCNCTTTTCAGTTTGTAATAATAGAAACAATGAGGTGATTTTGTTTTTTTTTTTAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_1846#1
CCCGGNGCCCCGGGCCCCGGCAATGGGCGGCGACCCTTCTGCCTAGGAAGTAAGGATTGC
GATTTTTGGAGGGGCTTTTTTACAAAATGGCCNCGATTAAGCGGGTGAAATACAAATACT
GCTACTACTACTACGAAAATACGATCGTCGTGTAGGAAATTTCCGGATTCCNCTANCCTC
TGCCACTTGCAAATTCAAAACTTGGGATATTTTAAATTTGAGGTAAACATTCTGAACAGA
GATAGATGCTAGAGAGTGATTTGAGTCNCNCGAGATCACTAAAGTTGGTGTGAACAACAA
CACGGTGTGTATCNCTTTTCAGTTTGTAATAATAGAAACAATGAGGTGATTTTGTTTTTT
TTTTTAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1846#0      CACGCGCTCCCCTCGCACGCCACCGGACGAACACCTCGCCGACAACCTTTGCTCCGGCGA 60
consensus_1846#1      ------------------------------------------------------------
                                                                                  

consensus_1846#0      CCGGAGGTCGGAGAGAGAGAAGAGAGATGAAGATGCCGGGGCGCCTGCTCGCCGCCGGAG 120
consensus_1846#1      ------------------------------------------------------------
                                                                                  

consensus_1846#0      CGGCGGCGCTGCTGGTGGCGGCGTCGGTGATGGTGGCGACGCTGCTGACGGCGCCGCTGC 180
consensus_1846#1      ------------------------------------------------------------
                                                                                  

consensus_1846#0      CGTTCCTGCCGTCGCTGATGCCGTGCCTGCCCGCGGTGACCGCGCCGTCGGGGTCCGGGT 240
consensus_1846#1      ------------------------------------------------------------
                                                                                  

consensus_1846#0      ACTCGCCGCCGGGCCTCGCGGCCCTCGCCGACGCCGCCGTGAGGTACGCCACGACGCCGA 300
consensus_1846#1      ------------------------------------------------------------
                                                                                  

consensus_1846#0      CCGTGCCGCAGCAGTCGCGCGCCGAGATCTCGCTGTCGCTGGCCGTGCTCCGCCGCCGCG 360
consensus_1846#1      ------------------------------------------------------------
                                                                                  

consensus_1846#0      CGCCGCTGCGGCTGCTGGTGTTCGGCCTGGGCCACGACTCGCCGCTGTGGCACGCGCTCA 420
consensus_1846#1      ------------------------------------------------------------
                                                                                  

consensus_1846#0      ACCCGGGCGGCGCCACCGTGTTCCTCGAGGAGGACCCGTCCTGGTACAGCGTCGTGCGGG 480
consensus_1846#1      ------------------------------------------------------------
                                                                                  

consensus_1846#0      GCCAGTCGCCGTTCCTCCGCGGCCACCTCGTCGCCTACCGCACGCGCCTCGACCACGCCG 540
consensus_1846#1      ------------------------------------------------------------
                                                                                  

consensus_1846#0      ACCGCCTCCTCGCCACCTACAAGGACCACCCCTCCTGCCTCCCCGGCGGCGGCGGCAATG 600
consensus_1846#1      ------------------------------------------------------------
                                                                                  

consensus_1846#0      GCGGCGGCGACGTGCCGCGCGTGCGGGGGAACGCGGAGTGCCCGCTGGCGCTGCACAACC 660
consensus_1846#1      ------------------------------------------------------------
                                                                                  

consensus_1846#0      TGCCGGCGGAGGTGTACGAGAAGGAGTGGGACATGGTGATGATCGACGCGCCCAAGGGGT 720
consensus_1846#1      ------------------------------------------------------------
                                                                                  

consensus_1846#0      ACTTCGCGTCGGCGCCGGGGAGGATGGCGGCGGTGTGGACGGCGGCGGCCATGGCGCGCG 780
consensus_1846#1      ------------------------------------------------------------
                                                                                  

consensus_1846#0      GGCGGCGCGGCGAGGGCGACACCGACGTGTTCCTCCACGACGTCGACCGCCGCGTGGAGA 840
consensus_1846#1      ------------------------------------------------------------
                                                                                  

consensus_1846#0      AGGCCTACGCCGAGGAGTTCCTCTGCGAGAGGTTCCGCGTCGGCGCCACCGGCCGCCTCT 900
consensus_1846#1      ------------------------------------------------------------
                                                                                  

consensus_1846#0      GGCATTTCAGGATCCCGCCGGCGTCGCGCCGCGGGAACGGCACGGCGGCCGCCGGCGGCG 960
consensus_1846#1      --------------------------------------------------CCCGGNGCCC 10
                                                                         **** * * 

consensus_1846#0      CCGGCGCCGGCGATGGGCGGCGACCCTTCTGCTAAGGAAGTAAGGATTGCGATTTTTGGA 1020
consensus_1846#1      CGGGCCCCGGCAATGGGCGGCGACCCTTCTGCCTAGGAAGTAAGGATTGCGATTTTTGGA 70
                      * *** ***** ********************  **************************

consensus_1846#0      GGGGCTTTTTTACAAAATGGCCTCGATTAAGCGGGTGAAATACAAATACTGCTACTACTA 1080
consensus_1846#1      GGGGCTTTTTTACAAAATGGCCNCGATTAAGCGGGTGAAATACAAATACTGCTACTACTA 130
                      ********************** *************************************

consensus_1846#0      CTACGAAAATACGATCGTCGTGTAGGAAATTTCCGGATTCCTCTATCCTCTGCCACTTGC 1140
consensus_1846#1      CTACGAAAATACGATCGTCGTGTAGGAAATTTCCGGATTCCNCTANCCTCTGCCACTTGC 190
                      ***************************************** *** **************

consensus_1846#0      AAATTCAAAACTTGGGATATTTTAAATTTGAGGTAAACATTCTGAACAGAGATAGATGCT 1200
consensus_1846#1      AAATTCAAAACTTGGGATATTTTAAATTTGAGGTAAACATTCTGAACAGAGATAGATGCT 250
                      ************************************************************

consensus_1846#0      AGAGAGTGATTTGAGTCTCTCGAGATCACTAAAGTTGGTGTGAACAACAACACGGTGTGT 1260
consensus_1846#1      AGAGAGTGATTTGAGTCNCNCGAGATCACTAAAGTTGGTGTGAACAACAACACGGTGTGT 310
                      ***************** * ****************************************

consensus_1846#0      ATCTCTTTTCAGTTTGTAATAATAGAAACAATGAGGTGATTTTGTTTTTTTTTTTTGGTA 1320
consensus_1846#1      ATCNCTTTTCAGTTTGTAATAATAGAAACAATGAGGTGATTTTGTTTTTTTTTTTAAAAA 370
                      *** ***************************************************    *

consensus_1846#0      TGAGTACATACTAATTTTTGAATAACATTGGTACATCAG 1359
consensus_1846#1      ANAAAAAAAAAAAAAAAAAAAAAAAAA------------ 397
                        *  * * *  **      ** ** *