cluster # 1847

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Oryza sativa
cluster # 1847 cluster # 1847 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1847#0 length = 613 sequences # 1

consensus_1847#1 length = 602 sequences # 1

consensusID : consensus_1847#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence

                              [ACTATTCAATAGTTCCATCATGAAACTCGAAATCTGTAATTACAGTGGTTATAAAATCTATCCTGGTCACGGTAAACGTGCCGTTAAAGTCGATGGTAAAATTCATATTTACCTCAATCAAAAATGTCAACGTTCAGCCGATATGAGACGAAATCCACGTCGTGTTACATGGACTGTTCTCTATCGACGAAAACATAAGAAAGGTGCAGCTGAACAAGAAATTAAAAAACGAACACGTCGTACTGTCAAATTTCAACGAGCTATCACAGGTGTTACTTGGAATGAAATTCTTGCTAAACGAAACCAACAACCAGAATTTCGTAAAGCTCAACGACAAGATGCTATCAATGCAGCTAAACAAGCTAAAAAGGTCAAAGCACAACAAAAGAAAGCTTCACAACCAGCTGGTGTTAAAGCTGCTAAACCAGTTAAGAAACAAGAAAAAATCCCAAAGAATATACCAAAAGGTGCACCCAAAAACATCTCTCAACGTTAAAACAAAGTCGCTAATCGATCGTCATCAACAACAACAATAATATGATTTTGTTTTCTATCGTTGAGTGTATTTCTCATCTGTTTTTGTTTTTGTTTTCAAAATATCATTAGATTCTAA]

[+] EMBL CA756401             [ACTATTCAATAGTTCCATCATGAAACTCGAAATCTGTAATTACAGTGGTTATAAAATCTATCCTGGTCACGGTAAACGTGCCGTTAAAGTCGATGGTAAAATTCATATTTACCTCAATCAAAAATGTCAACGTTCAGCCGATATGAGACGAAATCCACGTCGTGTTACATGGACTGTTCTCTATCGACGAAAACATAAGAAAGGTGCAGCTGAACAAGAAATTAAAAAACGAACACGTCGTACTGTCAAATTTCAACGAGCTATCACAGGTGTTACTTGGAATGAAATTCTTGCTAAACGAAACCAACAACCAGAATTTCGTAAAGCTCAACGACAAGATGCTATCAATGCAGCTAAACAAGCTAAAAAGGTCAAAGCACAACAAAAGAAAGCTTCACAACCAGCTGGTGTTAAAGCTGCTAAACCAGTTAAGAAACAAGAAAAAATCCCAAAGAATATACCAAAAGGTGCACCCAAAAACATCTCTCAACGTTAAAACAAAGTCGCTAATCGATCGTCATCAACAACAACAATAATATGATTTTGTTTTCTATCGTTGAGTGTATTTCTCATCTGTTTTTGTTTTTGTTTTCAAAATATCATTAGATTCTAA]




>consensus_1847#0
ACTATTCAATAGTTCCATCATGAAACTCGAAATCTGTAATTACAGTGGTTATAAAATCTA
TCCTGGTCACGGTAAACGTGCCGTTAAAGTCGATGGTAAAATTCATATTTACCTCAATCA
AAAATGTCAACGTTCAGCCGATATGAGACGAAATCCACGTCGTGTTACATGGACTGTTCT
CTATCGACGAAAACATAAGAAAGGTGCAGCTGAACAAGAAATTAAAAAACGAACACGTCG
TACTGTCAAATTTCAACGAGCTATCACAGGTGTTACTTGGAATGAAATTCTTGCTAAACG
AAACCAACAACCAGAATTTCGTAAAGCTCAACGACAAGATGCTATCAATGCAGCTAAACA
AGCTAAAAAGGTCAAAGCACAACAAAAGAAAGCTTCACAACCAGCTGGTGTTAAAGCTGC
TAAACCAGTTAAGAAACAAGAAAAAATCCCAAAGAATATACCAAAAGGTGCACCCAAAAA
CATCTCTCAACGTTAAAACAAAGTCGCTAATCGATCGTCATCAACAACAACAATAATATG
ATTTTGTTTTCTATCGTTGAGTGTATTTCTCATCTGTTTTTGTTTTTGTTTTCAAAATAT
CATTAGATTCTAA

consensusID : consensus_1847#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 602
fasta sequence

                              [AAAAGGAGAAGTCTATCGAGTCATCATGAAACTCGAAATTTGCAACTACAGTGGATATAAAATCTATCCAGGTCATGGTAAACGTGCTGTTAAAATCGACGGCAAGATTCATATTTACTTGAACTCGAAATGTCAACGATCGGCTGATATGCGTCGTAATCCACGTCGTGTAACATGGACAGTTTTATATCGTCGTAAACATAAGAAAGGTTCAACTGAACAAGAAGTCAAAAAACGAACACGACGAACAGTCAAATTTCAACGAGCCATCACCGGTGTTACCTGGAATGAAATTTTAGCTAAACGTAATCAACAACCAGAATTCCGTAAAGCTCAACGACAAGATGCTATCAATGCAGCTAAGCAAGTTAAGAAAGCTAAAGCTCAACAAAAGAAAGCTGCTCAACCAGCTGGTCTTAAAGCAAAACAACCCGTTAAAAAACAAGAGAAAATTCAAAAAAATATTCCTAAAGTTGCACAAAAGAAGAGCACACAACGTTAAATTAACTCCATCGTCGCTTATCGTTTTCTTGTTCGTTCAACTTTTCGTATCTCTGTGTCGAAAAGATTTGACTTATTTTTTGTTTTCTTTTTCTTCGATT]

[+] EMBL CA756414             [AAAAGGAGAAGTCTATCGAGTCATCATGAAACTCGAAATTTGCAACTACAGTGGATATAAAATCTATCCAGGTCATGGTAAACGTGCTGTTAAAATCGACGGCAAGATTCATATTTACTTGAACTCGAAATGTCAACGATCGGCTGATATGCGTCGTAATCCACGTCGTGTAACATGGACAGTTTTATATCGTCGTAAACATAAGAAAGGTTCAACTGAACAAGAAGTCAAAAAACGAACACGACGAACAGTCAAATTTCAACGAGCCATCACCGGTGTTACCTGGAATGAAATTTTAGCTAAACGTAATCAACAACCAGAATTCCGTAAAGCTCAACGACAAGATGCTATCAATGCAGCTAAGCAAGTTAAGAAAGCTAAAGCTCAACAAAAGAAAGCTGCTCAACCAGCTGGTCTTAAAGCAAAACAACCCGTTAAAAAACAAGAGAAAATTCAAAAAAATATTCCTAAAGTTGCACAAAAGAAGAGCACACAACGTTAAATTAACTCCATCGTCGCTTATCGTTTTCTTGTTCGTTCAACTTTTCGTATCTCTGTGTCGAAAAGATTTGACTTATTTTTTGTTTTCTTTTTCTTCGATT]




>consensus_1847#1
AAAAGGAGAAGTCTATCGAGTCATCATGAAACTCGAAATTTGCAACTACAGTGGATATAA
AATCTATCCAGGTCATGGTAAACGTGCTGTTAAAATCGACGGCAAGATTCATATTTACTT
GAACTCGAAATGTCAACGATCGGCTGATATGCGTCGTAATCCACGTCGTGTAACATGGAC
AGTTTTATATCGTCGTAAACATAAGAAAGGTTCAACTGAACAAGAAGTCAAAAAACGAAC
ACGACGAACAGTCAAATTTCAACGAGCCATCACCGGTGTTACCTGGAATGAAATTTTAGC
TAAACGTAATCAACAACCAGAATTCCGTAAAGCTCAACGACAAGATGCTATCAATGCAGC
TAAGCAAGTTAAGAAAGCTAAAGCTCAACAAAAGAAAGCTGCTCAACCAGCTGGTCTTAA
AGCAAAACAACCCGTTAAAAAACAAGAGAAAATTCAAAAAAATATTCCTAAAGTTGCACA
AAAGAAGAGCACACAACGTTAAATTAACTCCATCGTCGCTTATCGTTTTCTTGTTCGTTC
AACTTTTCGTATCTCTGTGTCGAAAAGATTTGACTTATTTTTTGTTTTCTTTTTCTTCGA
TT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1847#0      ------ACTATTCAATAGTTCCATCATGAAACTCGAAATCTGTAATTACAGTGGTTATAA 54
consensus_1847#1      AAAAGGAGAAGTCTATCGAGTCATCATGAAACTCGAAATTTGCAACTACAGTGGATATAA 60
                            *  * ** ** *   ****************** ** ** ******** *****

consensus_1847#0      AATCTATCCTGGTCACGGTAAACGTGCCGTTAAAGTCGATGGTAAAATTCATATTTACCT 114
consensus_1847#1      AATCTATCCAGGTCATGGTAAACGTGCTGTTAAAATCGACGGCAAGATTCATATTTACTT 120
                      ********* ***** *********** ****** **** ** ** ************ *

consensus_1847#0      CAATCAAAAATGTCAACGTTCAGCCGATATGAGACGAAATCCACGTCGTGTTACATGGAC 174
consensus_1847#1      GAACTCGAAATGTCAACGATCGGCTGATATGCGTCGTAATCCACGTCGTGTAACATGGAC 180
                       **    *********** ** ** ****** * ** ************** ********

consensus_1847#0      TGTTCTCTATCGACGAAAACATAAGAAAGGTGCAGCTGAACAAGAAATTAAAAAACGAAC 234
consensus_1847#1      AGTTTTATATCGTCGTAAACATAAGAAAGGTTCAACTGAACAAGAAGTCAAAAAACGAAC 240
                       *** * ***** ** *************** ** *********** * ***********

consensus_1847#0      ACGTCGTACTGTCAAATTTCAACGAGCTATCACAGGTGTTACTTGGAATGAAATTCTTGC 294
consensus_1847#1      ACGACGAACAGTCAAATTTCAACGAGCCATCACCGGTGTTACCTGGAATGAAATTTTAGC 300
                      *** ** ** ***************** ***** ******** ************ * **

consensus_1847#0      TAAACGAAACCAACAACCAGAATTTCGTAAAGCTCAACGACAAGATGCTATCAATGCAGC 354
consensus_1847#1      TAAACGTAATCAACAACCAGAATTCCGTAAAGCTCAACGACAAGATGCTATCAATGCAGC 360
                      ****** ** ************** ***********************************

consensus_1847#0      TAAACAAGCTAAAAAGGTCAAAGCACAACAAAAGAAAGCTTCACAACCAGCTGGTGTTAA 414
consensus_1847#1      TAAGCAAGTTAAGAAAGCTAAAGCTCAACAAAAGAAAGCTGCTCAACCAGCTGGTCTTAA 420
                      *** **** *** ** *  ***** *************** * ************ ****

consensus_1847#0      AGCTGCTAAACCAGTTAAGAAACAAGAAAAAATCCCAAAGAATATACCAAAAGGTGCACC 474
consensus_1847#1      AGCAAAACAACCCGTTAAAAAACAAGAGAAAATTCAAAAAAATATTCCTAAAGTTGCACA 480
                      ***     **** ***** ******** ***** * *** ***** ** **** ***** 

consensus_1847#0      CAAAAACATCTCTCAACGTTAAAACAAAGTCGCTAATCGATCGTCATCAACAACAACAAT 534
consensus_1847#1      AAAGAAGAGCACACAACGTTAAATTAACTCCATCG-TCGCTTATCGTTTTCTTGTTCGTT 539
                       ** ** * * * **********  **   *     *** *  ** *   *     *  *

consensus_1847#0      AATATGATTTTGTTTTCTATCGTTGAGTGTATTT--CTCATCTGTTTTTGTTTTTGTTTT 592
consensus_1847#1      CAACT--TTTCGTATCTCTGTGTCGAAAAGATTTGACTTATTTTTTGTTTTCTTTTTCTT 597
                       *  *  *** ** *      ** **    ****  ** ** * ** ** * *** * **

consensus_1847#0      CAAAATATCATTAGATTCTAA 613
consensus_1847#1      CGATT---------------- 602
                      * *