cluster # 1850

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1850 cluster # 1850 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1850#0 length = 599 sequences # 1

consensus_1850#1 length = 280 sequences # 1

consensusID : consensus_1850#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 599
fasta sequence

                              [TCCGGTGGTCGGCGGCGAGCCGAGGCGGCGGAGGGATGGGTGGGGGGATGATCTGAGCGGCAGCGGAGGACCTGGCGCGGAGCCGGCCGGTGGCGCTGTCGCTGTACAGGCGGATCCTGCGGGCGCTGAACTCGCCGGAGCTGCCGCTGGGGCACGCGGCGCGGCTGGCGAAGAAGGCGGAGTGCCGCGCCATCTTCGTCTTCGGCGCCGAGGAGAGGTCGCTCCACAACATCCGCGACCTCGTCGACGCCGCGCGCCACACCCTCGGCCTCCTCCACCGCGGCCGCCTCCCTTGAGTTGGGAGAAGAAGCAAGCTCGCGAGCTACAGCTATGGTATTATTACGCGTCTATTTCAGTGTTTTTTTTCTTAGCCATTCTAGATTGTAAGATTCAGTTCGTCCCTGTGTGACATGAACTGTGTTGGAGTGAACTAGTATATGCCCGATTTTAGATTTTTCTGCTATGTATGTGTACCACGCATAACATATCTATTCCAAACCGAAAAACGGTTAGCATTATGAATTTATTTCCACTGGAGTCAATTTGATGTTGTTCTTAGATTTGAGATGTAAAGTTCTCGATGGTACGAACTGATAAAA]

[+] EMBL AK120897             [TCCGGTGGTCGGCGGCGAGCCGAGGCGGCGGAGGGATGGGTGGGGGGATGATCTGAGCGGCAGCGGAGGACCTGGCGCGGAGCCGGCCGGTGGCGCTGTCGCTGTACAGGCGGATCCTGCGGGCGCTGAACTCGCCGGAGCTGCCGCTGGGGCACGCGGCGCGGCTGGCGAAGAAGGCGGAGTGCCGCGCCATCTTCGTCTTCGGCGCCGAGGAGAGGTCGCTCCACAACATCCGCGACCTCGTCGACGCCGCGCGCCACACCCTCGGCCTCCTCCACCGCGGCCGCCTCCCTTGAGTTGGGAGAAGAAGCAAGCTCGCGAGCTACAGCTATGGTATTATTACGCGTCTATTTCAGTGTTTTTTTTCTTAGCCATTCTAGATTGTAAGATTCAGTTCGTCCCTGTGTGACATGAACTGTGTTGGAGTGAACTAGTATATGCCCGATTTTAGATTTTTCTGCTATGTATGTGTACCACGCATAACATATCTATTCCAAACCGAAAAACGGTTAGCATTATGAATTTATTTCCACTGGAGTCAATTTGATGTTGTTCTTAGATTTGAGATGTAAAGTTCTCGATGGTACGAACTGATAAAA]




>consensus_1850#0
TCCGGTGGTCGGCGGCGAGCCGAGGCGGCGGAGGGATGGGTGGGGGGATGATCTGAGCGG
CAGCGGAGGACCTGGCGCGGAGCCGGCCGGTGGCGCTGTCGCTGTACAGGCGGATCCTGC
GGGCGCTGAACTCGCCGGAGCTGCCGCTGGGGCACGCGGCGCGGCTGGCGAAGAAGGCGG
AGTGCCGCGCCATCTTCGTCTTCGGCGCCGAGGAGAGGTCGCTCCACAACATCCGCGACC
TCGTCGACGCCGCGCGCCACACCCTCGGCCTCCTCCACCGCGGCCGCCTCCCTTGAGTTG
GGAGAAGAAGCAAGCTCGCGAGCTACAGCTATGGTATTATTACGCGTCTATTTCAGTGTT
TTTTTTCTTAGCCATTCTAGATTGTAAGATTCAGTTCGTCCCTGTGTGACATGAACTGTG
TTGGAGTGAACTAGTATATGCCCGATTTTAGATTTTTCTGCTATGTATGTGTACCACGCA
TAACATATCTATTCCAAACCGAAAAACGGTTAGCATTATGAATTTATTTCCACTGGAGTC
AATTTGATGTTGTTCTTAGATTTGAGATGTAAAGTTCTCGATGGTACGAACTGATAAAA

consensusID : consensus_1850#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 280
fasta sequence

                              [TTCTCTTCCCGTGGCCCTTGCGTCGGCGGCGGAGGGATGGCGAAGGCCGGTGGGGGGATGATCTGGGCGACGGCGGAGGACCTGGCGCGGAGCCGGCCGGTGGTGCTGTCGCTGTACAGGCAGATCCTGCGGGCGCTGAACTCGCCGGCGCTGCCGCTGGGGCACGCGGCGCGGCTGGCGAAGAAGGCGGAGTGCCGCGCCATCTTCATCTTCGCCGCCGAGGAGAGGTCGATCCACAACATCCGCGACCTCCTCGACGCCGCGCGCCACACCCTCGGCC]

[+] EMBL BI794900             [TTCTCTTCCCGTGGCCCTTGCGTCGGCGGCGGAGGGATGGCGAAGGCCGGTGGGGGGATGATCTGGGCGACGGCGGAGGACCTGGCGCGGAGCCGGCCGGTGGTGCTGTCGCTGTACAGGCAGATCCTGCGGGCGCTGAACTCGCCGGCGCTGCCGCTGGGGCACGCGGCGCGGCTGGCGAAGAAGGCGGAGTGCCGCGCCATCTTCATCTTCGCCGCCGAGGAGAGGTCGATCCACAACATCCGCGACCTCCTCGACGCCGCGCGCCACACCCTCGGCC]




>consensus_1850#1
TTCTCTTCCCGTGGCCCTTGCGTCGGCGGCGGAGGGATGGCGAAGGCCGGTGGGGGGATG
ATCTGGGCGACGGCGGAGGACCTGGCGCGGAGCCGGCCGGTGGTGCTGTCGCTGTACAGG
CAGATCCTGCGGGCGCTGAACTCGCCGGCGCTGCCGCTGGGGCACGCGGCGCGGCTGGCG
AAGAAGGCGGAGTGCCGCGCCATCTTCATCTTCGCCGCCGAGGAGAGGTCGATCCACAAC
ATCCGCGACCTCCTCGACGCCGCGCGCCACACCCTCGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1850#0      ------TCCGGTGGTCG--GCGGCGA--GCCGAGGCGGCGGAGGGATGGGTGGGGGGATG 50
consensus_1850#1      TTCTCTTCCCGTGGCCCTTGCGTCGGCGGCGGAGGGATGGCGAAGGCCGGTGGGGGGATG 60
                            *** **** *   *** **   ** ****    *    *   ************

consensus_1850#0      ATCTGAGCGGCAGCGGAGGACCTGGCGCGGAGCCGGCCGGTGGCGCTGTCGCTGTACAGG 110
consensus_1850#1      ATCTGGGCGACGGCGGAGGACCTGGCGCGGAGCCGGCCGGTGGTGCTGTCGCTGTACAGG 120
                      ***** *** * ******************************* ****************

consensus_1850#0      CGGATCCTGCGGGCGCTGAACTCGCCGGAGCTGCCGCTGGGGCACGCGGCGCGGCTGGCG 170
consensus_1850#1      CAGATCCTGCGGGCGCTGAACTCGCCGGCGCTGCCGCTGGGGCACGCGGCGCGGCTGGCG 180
                      * ************************** *******************************

consensus_1850#0      AAGAAGGCGGAGTGCCGCGCCATCTTCGTCTTCGGCGCCGAGGAGAGGTCGCTCCACAAC 230
consensus_1850#1      AAGAAGGCGGAGTGCCGCGCCATCTTCATCTTCGCCGCCGAGGAGAGGTCGATCCACAAC 240
                      *************************** ****** **************** ********

consensus_1850#0      ATCCGCGACCTCGTCGACGCCGCGCGCCACACCCTCGGCCTCCTCCACCGCGGCCGCCTC 290
consensus_1850#1      ATCCGCGACCTCCTCGACGCCGCGCGCCACACCCTCGGCC-------------------- 280
                      ************ ***************************                    

consensus_1850#0      CCTTGAGTTGGGAGAAGAAGCAAGCTCGCGAGCTACAGCTATGGTATTATTACGCGTCTA 350
consensus_1850#1      ------------------------------------------------------------
                                                                                  

consensus_1850#0      TTTCAGTGTTTTTTTTCTTAGCCATTCTAGATTGTAAGATTCAGTTCGTCCCTGTGTGAC 410
consensus_1850#1      ------------------------------------------------------------
                                                                                  

consensus_1850#0      ATGAACTGTGTTGGAGTGAACTAGTATATGCCCGATTTTAGATTTTTCTGCTATGTATGT 470
consensus_1850#1      ------------------------------------------------------------
                                                                                  

consensus_1850#0      GTACCACGCATAACATATCTATTCCAAACCGAAAAACGGTTAGCATTATGAATTTATTTC 530
consensus_1850#1      ------------------------------------------------------------
                                                                                  

consensus_1850#0      CACTGGAGTCAATTTGATGTTGTTCTTAGATTTGAGATGTAAAGTTCTCGATGGTACGAA 590
consensus_1850#1      ------------------------------------------------------------
                                                                                  

consensus_1850#0      CTGATAAAA 599
consensus_1850#1      ---------