cluster # 1859

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Oryza sativa
cluster # 1859 cluster # 1859 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1859#0 length = 501 sequences # 1

consensus_1859#1 length = 340 sequences # 1

consensusID : consensus_1859#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence

                              [ATGCATACCATTAAGCACAAATCTTACTCACCTGGTTCATGAAAAAGAAGGATTCACCGAATTGCATCTTTCATGGTTATGAACGACCTTGAGTTTAGTAATGTTCTGTCTGTCTCGCCTTTGCAACGACATGAAGTATTGGGACCCCTACAGGAATCCCAATAACCATAGGGATATGGATAATGCTTCCCTCATATAGATAGCCCTTTCCTGCTCCACCGATGTTTTCCTTCTATTCTCCTGTTCTGCCCCATCCACTCTTTCTCTGGCTTGGCACAGGCTATCAGAAGGGGAGGAACACTTTCATGTTCAGATCATCTTATTTCCTTCTTTTCTTTTTCTTCATTTATTGCATTTGTAAGGTAAGATCAGACCCATAGTGGTTTGTCTTTTGGGTTTGACATAAATCGCTGTTTCTCCTGCTGGTTCTCTGGATTTGGGCGCTTGTATCTTTGTTGGTCGGCTGAGTAAAGCTTTTAGAGTTACCCCGGAAAAAAAAAA]

[+] EMBL BI808089             [ATGCATACCATTAAGCACAAATCTTACTCACCTGGTTCATGAAAAAGAAGGATTCACCGAATTGCATCTTTCATGGTTATGAACGACCTTGAGTTTAGTAATGTTCTGTCTGTCTCGCCTTTGCAACGACATGAAGTATTGGGACCCCTACAGGAATCCCAATAACCATAGGGATATGGATAATGCTTCCCTCATATAGATAGCCCTTTCCTGCTCCACCGATGTTTTCCTTCTATTCTCCTGTTCTGCCCCATCCACTCTTTCTCTGGCTTGGCACAGGCTATCAGAAGGGGAGGAACACTTTCATGTTCAGATCATCTTATTTCCTTCTTTTCTTTTTCTTCATTTATTGCATTTGTAAGGTAAGATCAGACCCATAGTGGTTTGTCTTTTGGGTTTGACATAAATCGCTGTTTCTCCTGCTGGTTCTCTGGATTTGGGCGCTTGTATCTTTGTTGGTCGGCTGAGTAAAGCTTTTAGAGTTACCCCGGAAAAAAAAAA]




>consensus_1859#0
ATGCATACCATTAAGCACAAATCTTACTCACCTGGTTCATGAAAAAGAAGGATTCACCGA
ATTGCATCTTTCATGGTTATGAACGACCTTGAGTTTAGTAATGTTCTGTCTGTCTCGCCT
TTGCAACGACATGAAGTATTGGGACCCCTACAGGAATCCCAATAACCATAGGGATATGGA
TAATGCTTCCCTCATATAGATAGCCCTTTCCTGCTCCACCGATGTTTTCCTTCTATTCTC
CTGTTCTGCCCCATCCACTCTTTCTCTGGCTTGGCACAGGCTATCAGAAGGGGAGGAACA
CTTTCATGTTCAGATCATCTTATTTCCTTCTTTTCTTTTTCTTCATTTATTGCATTTGTA
AGGTAAGATCAGACCCATAGTGGTTTGTCTTTTGGGTTTGACATAAATCGCTGTTTCTCC
TGCTGGTTCTCTGGATTTGGGCGCTTGTATCTTTGTTGGTCGGCTGAGTAAAGCTTTTAG
AGTTACCCCGGAAAAAAAAAA

consensusID : consensus_1859#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 340
fasta sequence

                              [CTCGCCTTTGCAACGNCATGAAGTATTGGACCGCTACAGGAATGCAAAGTAAGCCATAGGGAGTATGGATAATGCTTCCCTCATATAGATAGCCCTTTCCTGCTCCACCGATGTTTTCCTTCTATTCTCCTGTTCTGCCCCATCCACTCTTTCTCTGGCTTGGCACAGGCTATCAGAAGGGGAGGAACATTTCATGTTCAGATCATCTTATTTCCTTCTTTTCTTTTTCTTCATTTATTGCATTTGTAAGGTAAGATCAGACCCATAGTGGTTTGTCTTTTGGGTTTGACATAAATCGCTGTTTCTCCTGCTGGTTCTCTGGAAAAAAAAAAAAAAAAAA]

[+] EMBL AU068095             [CTCGCCTTTGCAACGNCATGAAGTATTGGACCGCTACAGGAATGCAAAGTAAGCCATAGGGAGTATGGATAATGCTTCCCTCATATAGATAGCCCTTTCCTGCTCCACCGATGTTTTCCTTCTATTCTCCTGTTCTGCCCCATCCACTCTTTCTCTGGCTTGGCACAGGCTATCAGAAGGGGAGGAACATTTCATGTTCAGATCATCTTATTTCCTTCTTTTCTTTTTCTTCATTTATTGCATTTGTAAGGTAAGATCAGACCCATAGTGGTTTGTCTTTTGGGTTTGACATAAATCGCTGTTTCTCCTGCTGGTTCTCTGGAAAAAAAAAAAAAAAAAA]




>consensus_1859#1
CTCGCCTTTGCAACGNCATGAAGTATTGGACCGCTACAGGAATGCAAAGTAAGCCATAGG
GAGTATGGATAATGCTTCCCTCATATAGATAGCCCTTTCCTGCTCCACCGATGTTTTCCT
TCTATTCTCCTGTTCTGCCCCATCCACTCTTTCTCTGGCTTGGCACAGGCTATCAGAAGG
GGAGGAACATTTCATGTTCAGATCATCTTATTTCCTTCTTTTCTTTTTCTTCATTTATTG
CATTTGTAAGGTAAGATCAGACCCATAGTGGTTTGTCTTTTGGGTTTGACATAAATCGCT
GTTTCTCCTGCTGGTTCTCTGGAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1859#0      ATGCATACCATTAAGCACAAATCTTACTCACCTGGTTCATGAAAAAGAAGGATTCACCGA 60
consensus_1859#1      ------------------------------------------------------------
                                                                                  

consensus_1859#0      ATTGCATCTTTCATGGTTATGAACGACCTTGAGTTTAGTAATGTTCTGTCTGTCTCGCCT 120
consensus_1859#1      -----------------------------------------------------CTCGCCT 7
                                                                           *******

consensus_1859#0      TTGCAACGACATGAAGTATTGGGACCCCTACAGGAATCCCAAT--AACCATAGGGA-TAT 177
consensus_1859#1      TTGCAACGNCATGAAGTATTGG-ACCGCTACAGGAATGCAAAGTAAGCCATAGGGAGTAT 66
                      ******** ************* *** ********** * **   * ********* ***

consensus_1859#0      GGATAATGCTTCCCTCATATAGATAGCCCTTTCCTGCTCCACCGATGTTTTCCTTCTATT 237
consensus_1859#1      GGATAATGCTTCCCTCATATAGATAGCCCTTTCCTGCTCCACCGATGTTTTCCTTCTATT 126
                      ************************************************************

consensus_1859#0      CTCCTGTTCTGCCCCATCCACTCTTTCTCTGGCTTGGCACAGGCTATCAGAAGGGGAGGA 297
consensus_1859#1      CTCCTGTTCTGCCCCATCCACTCTTTCTCTGGCTTGGCACAGGCTATCAGAAGGGGAGGA 186
                      ************************************************************

consensus_1859#0      ACACTTTCATGTTCAGATCATCTTATTTCCTTCTTTTCTTTTTCTTCATTTATTGCATTT 357
consensus_1859#1      ACA-TTTCATGTTCAGATCATCTTATTTCCTTCTTTTCTTTTTCTTCATTTATTGCATTT 245
                      *** ********************************************************

consensus_1859#0      GTAAGGTAAGATCAGACCCATAGTGGTTTGTCTTTTGGGTTTGACATAAATCGCTGTTTC 417
consensus_1859#1      GTAAGGTAAGATCAGACCCATAGTGGTTTGTCTTTTGGGTTTGACATAAATCGCTGTTTC 305
                      ************************************************************

consensus_1859#0      TCCTGCTGGTTCTCTGGATTTGGGCGCTTGTATCTTTGTTGGTCGGCTGAGTAAAGCTTT 477
consensus_1859#1      TCCTGCTGGTTCTCTGGAAAAAAAAAAAAAAAAAA------------------------- 340
                      ******************             *                            

consensus_1859#0      TAGAGTTACCCCGGAAAAAAAAAA 501
consensus_1859#1      ------------------------