cluster # 1896

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Oryza sativa
cluster # 1896 cluster # 1896 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1896#0 length = 463 sequences # 1

consensus_1896#1 length = 395 sequences # 1

consensusID : consensus_1896#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 463
fasta sequence

                              [AGGCGTTCGCGCTCGTCGCCGACGACCTCCGGTTCGTGGCGTCGCAGTTCCGGCGCCTGCACAGCGCGCGCATCCGGCACAGGTTCCGCTTCTACNCCCACCAGTGGCGCACGTGGGCGGCGTGCTTCATCCAGGCCGCCTGGCGCCGGAACAAGCGGCGCCGCGCGTCCATGGAGCTCAGGATGCGGGANGGCGGCGAGGCGCGGCCGGGAGGGAGCGTGAGGTGTCGTCGGCACAGCTGCGACGGCAAAGCGCTCATCAAGAAACCCATGGAACCGGATTTCACCGTCGAAGAAGAGGACTGATCTAATCGAATAGATCGATCATACTGTGTTTTCTGTTCAGTTAACTAGTCATGTTACGTCTGATGTACTTTTGCTTTGAGTGGTGTGTAATAAGTTNACTGCTTGTATCAACTTNAAGTTGCATTTGTGTAATAATTTAGACGCTTTGCTAGATATAC]

[+] EMBL C98967               [AGGCGTTCGCGCTCGTCGCCGACGACCTCCGGTTCGTGGCGTCGCAGTTCCGGCGCCTGCACAGCGCGCGCATCCGGCACAGGTTCCGCTTCTACNCCCACCAGTGGCGCACGTGGGCGGCGTGCTTCATCCAGGCCGCCTGGCGCCGGAACAAGCGGCGCCGCGCGTCCATGGAGCTCAGGATGCGGGANGGCGGCGAGGCGCGGCCGGGAGGGAGCGTGAGGTGTCGTCGGCACAGCTGCGACGGCAAAGCGCTCATCAAGAAACCCATGGAACCGGATTTCACCGTCGAAGAAGAGGACTGATCTAATCGAATAGATCGATCATACTGTGTTTTCTGTTCAGTTAACTAGTCATGTTACGTCTGATGTACTTTTGCTTTGAGTGGTGTGTAATAAGTTNACTGCTTGTATCAACTTNAAGTTGCATTTGTGTAATAATTTAGACGCTTTGCTAGATATAC]




>consensus_1896#0
AGGCGTTCGCGCTCGTCGCCGACGACCTCCGGTTCGTGGCGTCGCAGTTCCGGCGCCTGC
ACAGCGCGCGCATCCGGCACAGGTTCCGCTTCTACNCCCACCAGTGGCGCACGTGGGCGG
CGTGCTTCATCCAGGCCGCCTGGCGCCGGAACAAGCGGCGCCGCGCGTCCATGGAGCTCA
GGATGCGGGANGGCGGCGAGGCGCGGCCGGGAGGGAGCGTGAGGTGTCGTCGGCACAGCT
GCGACGGCAAAGCGCTCATCAAGAAACCCATGGAACCGGATTTCACCGTCGAAGAAGAGG
ACTGATCTAATCGAATAGATCGATCATACTGTGTTTTCTGTTCAGTTAACTAGTCATGTT
ACGTCTGATGTACTTTTGCTTTGAGTGGTGTGTAATAAGTTNACTGCTTGTATCAACTTN
AAGTTGCATTTGTGTAATAATTTAGACGCTTTGCTAGATATAC

consensusID : consensus_1896#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [AGGCCGCCAAGCCCGCCCGGNAGGAACCTGAGGTGTCGTCGGCACACTGCGACGGCAAAGCGCTCATCAAGAACCCCATGGAACCGGATTTCACCGTCGAAGAAGAGGACTGATCTAATCGAATAGATCGATCATACTGTGTTTTCTGTTCAGTTAGCTAGTCATGTTACGTTCTGATGTACTTTTGCTTTGAGTGGTGTGTAATAAGTTGAGCTGCTTGTATCAACTTGAAGTTGCATTTTGTGTAAGTATTTAGACGCTTTTGCTAGATATACATTGGTCCTGTGAATGTTCTAGATATACATTTAGACGCTTTTGCTAGATCGGGAAAATTGGTTCTGTGAAACTGTGACATATATTGAAAGATGTCGTTCACTNGTNGCAAAAAAAAAAAA]

[+] EMBL C98968               [AGGCCGCCAAGCCCGCCCGGNAGGAACCTGAGGTGTCGTCGGCACACTGCGACGGCAAAGCGCTCATCAAGAACCCCATGGAACCGGATTTCACCGTCGAAGAAGAGGACTGATCTAATCGAATAGATCGATCATACTGTGTTTTCTGTTCAGTTAGCTAGTCATGTTACGTTCTGATGTACTTTTGCTTTGAGTGGTGTGTAATAAGTTGAGCTGCTTGTATCAACTTGAAGTTGCATTTTGTGTAAGTATTTAGACGCTTTTGCTAGATATACATTGGTCCTGTGAATGTTCTAGATATACATTTAGACGCTTTTGCTAGATCGGGAAAATTGGTTCTGTGAAACTGTGACATATATTGAAAGATGTCGTTCACTNGTNGCAAAAAAAAAAAA]




>consensus_1896#1
AGGCCGCCAAGCCCGCCCGGNAGGAACCTGAGGTGTCGTCGGCACACTGCGACGGCAAAG
CGCTCATCAAGAACCCCATGGAACCGGATTTCACCGTCGAAGAAGAGGACTGATCTAATC
GAATAGATCGATCATACTGTGTTTTCTGTTCAGTTAGCTAGTCATGTTACGTTCTGATGT
ACTTTTGCTTTGAGTGGTGTGTAATAAGTTGAGCTGCTTGTATCAACTTGAAGTTGCATT
TTGTGTAAGTATTTAGACGCTTTTGCTAGATATACATTGGTCCTGTGAATGTTCTAGATA
TACATTTAGACGCTTTTGCTAGATCGGGAAAATTGGTTCTGTGAAACTGTGACATATATT
GAAAGATGTCGTTCACTNGTNGCAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1896#0      AGGCGTTCGCGCTCGTCGCCGACGACCTCCGGTTCGTGGCGTCGCAGTTCCGGCGCCTGC 60
consensus_1896#1      ------------------------------------------------------------
                                                                                  

consensus_1896#0      ACAGCGCGCGCATCCGGCACAGGTTCCGCTTCTACNCCCACCAGTGGCGCACGTGGGCGG 120
consensus_1896#1      ------------------------------------------------------------
                                                                                  

consensus_1896#0      CGTGCTTCATCCAGGCCGCCTGGCGCCGGAACAAGCGGCGCCGCGCGTCCATGGAGCTCA 180
consensus_1896#1      ------------------------------------------------------------
                                                                                  

consensus_1896#0      GGATGCGGGANGGCGGCGAGGCGCGGCCGGGAGGGAGCGTGAGGTGTCGTCGGCACAGCT 240
consensus_1896#1      ----------AGGCCGCCAAGCCCGCCCGGNAGGAA-CCTGAGGTGTCGTCGGCACA-CT 48
                                 *** ** * ** ** **** *** * * ****************** **

consensus_1896#0      GCGACGGCAAAGCGCTCATCAAGAAACCCATGGAACCGGATTTCACCGTCGAAGAAGAGG 300
consensus_1896#1      GCGACGGCAAAGCGCTCATCAAGAACCCCATGGAACCGGATTTCACCGTCGAAGAAGAGG 108
                      ************************* **********************************

consensus_1896#0      ACTGATCTAATCGAATAGATCGATCATACTGTGTTTTCTGTTCAGTTAACTAGTCATGTT 360
consensus_1896#1      ACTGATCTAATCGAATAGATCGATCATACTGTGTTTTCTGTTCAGTTAGCTAGTCATGTT 168
                      ************************************************ ***********

consensus_1896#0      ACGT-CTGATGTACTTTTGCTTTGAGTGGTGTGTAATAAGTTNA-CTGCTTGTATCAACT 418
consensus_1896#1      ACGTTCTGATGTACTTTTGCTTTGAGTGGTGTGTAATAAGTTGAGCTGCTTGTATCAACT 228
                      **** ************************************* * ***************

consensus_1896#0      TNAAGTTGCATTT-GTGTAATAATTTAGACGCTTT-GCTAGATATAC------------- 463
consensus_1896#1      TGAAGTTGCATTTTGTGTAAGTATTTAGACGCTTTTGCTAGATATACATTGGTCCTGTGA 288
                      * *********** ******  ************* ***********             

consensus_1896#0      ------------------------------------------------------------
consensus_1896#1      ATGTTCTAGATATACATTTAGACGCTTTTGCTAGATCGGGAAAATTGGTTCTGTGAAACT 348
                                                                                  

consensus_1896#0      -----------------------------------------------
consensus_1896#1      GTGACATATATTGAAAGATGTCGTTCACTNGTNGCAAAAAAAAAAAA 395