cluster # 194

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Oryza sativa
cluster # 194 cluster # 194 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_194#0 length = 597 sequences # 1

consensus_194#1 length = 581 sequences # 1

consensusID : consensus_194#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence

                              [ATCATGACTCGTGTTAAATGCTCGAAATTACGTGGCAAAAAGCCTGATGAACTTCAAAAACAATTGGAAGAATTACGTCAAGAATTAAACACACTTCGTGTTGGTAAAGTCACTGGAAGTGGTGGTGCACAAAAATTAGGCAAAATTCGTAATGTACGAAAATCGATTGCACGTGTTTTAATTGTTATTAATCAAACAACAAAACAAAACTTACGTGCATTGTATCATGGTAAAAAATATAAACCAAAAGATTTACGACAACGTAAAACACGAGCTATTCGACGTTTACAAACACCGAAAGAAAAATCTATTCAATTGAAAAAACTTCAACGACGACNATGGGCGTTTCCACAACGTACATTCGCTGTTAAAGCTTAAAGAAGAAATTCGATTGTTTTGTAAGAAGAAAAAAGACGTAGAAATCATTTCGATGAATTTTTTTTTCTTGTATAAGATCAAGTTTAAAATAAAAAAATTANNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL CA756320             [ATCATGACTCGTGTTAAATGCTCGAAATTACGTGGCAAAAAGCCTGATGAACTTCAAAAACAATTGGAAGAATTACGTCAAGAATTAAACACACTTCGTGTTGGTAAAGTCACTGGAAGTGGTGGTGCACAAAAATTAGGCAAAATTCGTAATGTACGAAAATCGATTGCACGTGTTTTAATTGTTATTAATCAAACAACAAAACAAAACTTACGTGCATTGTATCATGGTAAAAAATATAAACCAAAAGATTTACGACAACGTAAAACACGAGCTATTCGACGTTTACAAACACCGAAAGAAAAATCTATTCAATTGAAAAAACTTCAACGACGACNATGGGCGTTTCCACAACGTACATTCGCTGTTAAAGCTTAAAGAAGAAATTCGATTGTTTTGTAAGAAGAAAAAAGACGTAGAAATCATTTCGATGAATTTTTTTTTCTTGTATAAGATCAAGTTTAAAATAAAAAAATTANNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]




>consensus_194#0
ATCATGACTCGTGTTAAATGCTCGAAATTACGTGGCAAAAAGCCTGATGAACTTCAAAAA
CAATTGGAAGAATTACGTCAAGAATTAAACACACTTCGTGTTGGTAAAGTCACTGGAAGT
GGTGGTGCACAAAAATTAGGCAAAATTCGTAATGTACGAAAATCGATTGCACGTGTTTTA
ATTGTTATTAATCAAACAACAAAACAAAACTTACGTGCATTGTATCATGGTAAAAAATAT
AAACCAAAAGATTTACGACAACGTAAAACACGAGCTATTCGACGTTTACAAACACCGAAA
GAAAAATCTATTCAATTGAAAAAACTTCAACGACGACNATGGGCGTTTCCACAACGTACA
TTCGCTGTTAAAGCTTAAAGAAGAAATTCGATTGTTTTGTAAGAAGAAAAAAGACGTAGA
AATCATTTCGATGAATTTTTTTTTCTTGTATAAGATCAAGTTTAAAATAAAAAAATTANN
NGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

consensusID : consensus_194#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence

                              [ACTTTTTTTTTCATCGAAAAAAATGACACAAGTTAAATGTTCACAACTTCGTGGTAAAAAACCAGAGGAGATTTTAAAACAACTAAATGATTTACGTCAAGAATTGAACACATTACGTGTTGGTAAAGTAACTGGCAGTGGTGGTGCACAGAAATTAGGCAAAATTCGTAATGTACGTAAATCGATTGCACGTGTACTTATCGTTCGTAATCAAACGACCAAAGATAATTTAAGAAAATTATATCACGGANAAAAATATAAACCAAAAGATTTACGTCGACGTANAACACGTGCCATTCGTCGTTTATTAACACCAAAGAACAATCGGTTCAATTGAAAAAACTTCAACGACGACNATGGGCTTTTTCACAACGTACATTCGCTGTTAAAGCTTAAGTTTACAGACCAGAAAACATGAAAAAAAAAGATCCTAAGGAAAAATCATATGTCTCTTGGTGGCATTCTTGGTCCGGTGTGGTGGTTTTTTTTTATTTTGGAAATATTCGTTGGTTAAGAATTGGAACCGATTAAATAAGAAGAAAATTTTTCCCCAGAACATATCAAATGAAAGATACAGTAAC]

[+] EMBL CA755741             [ACTTTTTTTTTCATCGAAAAAAATGACACAAGTTAAATGTTCACAACTTCGTGGTAAAAAACCAGAGGAGATTTTAAAACAACTAAATGATTTACGTCAAGAATTGAACACATTACGTGTTGGTAAAGTAACTGGCAGTGGTGGTGCACAGAAATTAGGCAAAATTCGTAATGTACGTAAATCGATTGCACGTGTACTTATCGTTCGTAATCAAACGACCAAAGATAATTTAAGAAAATTATATCACGGANAAAAATATAAACCAAAAGATTTACGTCGACGTANAACACGTGCCATTCGTCGTTTATTAACACCAAAGAACAATCGGTTCAATTGAAAAAACTTCAACGACGACNATGGGCTTTTTCACAACGTACATTCGCTGTTAAAGCTTAAGTTTACAGACCAGAAAACATGAAAAAAAAAGATCCTAAGGAAAAATCATATGTCTCTTGGTGGCATTCTTGGTCCGGTGTGGTGGTTTTTTTTTATTTTGGAAATATTCGTTGGTTAAGAATTGGAACCGATTAAATAAGAAGAAAATTTTTCCCCAGAACATATCAAATGAAAGATACAGTAAC]




>consensus_194#1
ACTTTTTTTTTCATCGAAAAAAATGACACAAGTTAAATGTTCACAACTTCGTGGTAAAAA
ACCAGAGGAGATTTTAAAACAACTAAATGATTTACGTCAAGAATTGAACACATTACGTGT
TGGTAAAGTAACTGGCAGTGGTGGTGCACAGAAATTAGGCAAAATTCGTAATGTACGTAA
ATCGATTGCACGTGTACTTATCGTTCGTAATCAAACGACCAAAGATAATTTAAGAAAATT
ATATCACGGANAAAAATATAAACCAAAAGATTTACGTCGACGTANAACACGTGCCATTCG
TCGTTTATTAACACCAAAGAACAATCGGTTCAATTGAAAAAACTTCAACGACGACNATGG
GCTTTTTCACAACGTACATTCGCTGTTAAAGCTTAAGTTTACAGACCAGAAAACATGAAA
AAAAAAGATCCTAAGGAAAAATCATATGTCTCTTGGTGGCATTCTTGGTCCGGTGTGGTG
GTTTTTTTTTATTTTGGAAATATTCGTTGGTTAAGAATTGGAACCGATTAAATAAGAAGA
AAATTTTTCCCCAGAACATATCAAATGAAAGATACAGTAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_194#0      -------------------ATCATGACTCGTGTTAAATGCTCGAAATTACGTGGCAAAAA 41
consensus_194#1      ACTTTTTTTTTCATCGAAAAAAATGACACAAGTTAAATGTTCACAACTTCGTGGTAAAAA 60
                                        *  ***** *  ******** **  ** * ***** *****

consensus_194#0      GCCTGATGAACTTCAAAAACAATTGGAAGAATTACGTCAAGAATTAAACACACTTCGTGT 101
consensus_194#1      ACCAGAGGAGATTTTAAAACAACTAAATGATTTACGTCAAGAATTGAACACATTACGTGT 120
                      ** ** **  **  ******* *  * ** ************** ****** * *****

consensus_194#0      TGGTAAAGTCACTGGAAGTGGTGGTGCACAAAAATTAGGCAAAATTCGTAATGTACGAAA 161
consensus_194#1      TGGTAAAGTAACTGGCAGTGGTGGTGCACAGAAATTAGGCAAAATTCGTAATGTACGTAA 180
                     ********* ***** ************** ************************** **

consensus_194#0      ATCGATTGCACGTGTTTTAATTGTTATTAATCAAACAACAAAACAAAACTTACGTGCATT 221
consensus_194#1      ATCGATTGCACGTGTACTTATCGTTCGTAATCAAACGACCAAAGATAATTTAAGAAAATT 240
                     ***************  * ** ***  ********* ** *** * ** *** *   ***

consensus_194#0      GTATCATGGTAAAAAATATAAACCAAAAGATTTACGACAACGTAAAACACGAGCTATTCG 281
consensus_194#1      ATATCACGGANAAAAATATAAACCAAAAGATTTACGTCGACGTANAACACGTGCCATTCG 300
                      ***** **  ************************* * ***** ****** ** *****

consensus_194#0      ACGTTTACAAACACCGAAAGAAAAATCTATTCAATTGAAAAAACTTCAACGACGACNATG 341
consensus_194#1      TCGTTTATTAACACC-AAAGAACAATCGGTTCAATTGAAAAAACTTCAACGACGACNATG 359
                      ******  ****** ****** ****  *******************************

consensus_194#0      GGCGTTTCCACAACGTACATTCGCTGTTAAAGCTTAAAGAAGAAATTCGATTGTTTTGTA 401
consensus_194#1      GGCTTTTTCACAACGTACATTCGCTGTTAAAGCTTAA---------------GTTTACAG 404
                     *** *** *****************************               ****    

consensus_194#0      AGAAGAAAAAAGACGTAGAAATCATTTCGATGAATTTTTTTTTCTTGTATAAGATCAAGT 461
consensus_194#1      ACCAGAAAACATGAAAAAAAAAGATCCTAAGGAA-----------------AAATCATAT 447
                     *  ****** *     * ***  **    * ***                 * ****  *

consensus_194#0      TTAAAATAAAAAAATTANNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 521
consensus_194#1      GTCTCTTGGTGGCATTCTTGGTCCGGTGTGGTGGTTTTTTTTTATTTTGGAAATATTCGT 507
                      *    *      ***    *                                       

consensus_194#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 581
consensus_194#1      TGGTTAAGAATTGGAACCGATTAAATAAGAAGAAAATTTTTCCCCAGAACATATCAAATG 567
                                                                                 

consensus_194#0      NNNNNNNNNNNNNNNN 597
consensus_194#1      AAAGATACAGTAAC-- 581