cluster # 1945

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Oryza sativa
cluster # 1945 cluster # 1945 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1945#0 length = 969 sequences # 1

consensus_1945#1 length = 236 sequences # 1

consensusID : consensus_1945#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 969
fasta sequence

                              [GCATCTTGCGGCTTGCAAAGGGTTCGAAGATGTCGTCCAGTTCCTCCTCCACGAAGGCGTCGACATCGATCTTTCCGACAAATTTGGCGAAGCTGAGCCTGGGGCACGACGCCGCTGGACGAAGGGCGCAGGTGCGGGAGCCGGACGATGGTGCAGCTGCTGGAGGCGGCCAAGTCCGGCGAGCTCTCCAGGTACCCGGAGCGCGGCGAGGAGGTGCGGGACAAGATGCACCCGCGGCGGTGCTCCGTGTTCCCGCACCACCCGTGGGACGGCGGCGAGCGGCGGCGGGAAGGGGTGGTGGTGTGGATCCCGCACACCATCGAGGGGCTCGTCAGCTCGGCGCAGGAGAAGCTCGGCCTCGCCGGCTCCGGCGAGGGGCTCCGGCTGCTCGGCGAGGACGGCGCCAGAGTGCTCGACGTCGACATGGTCCACGACGGGCAGAAGCTCTACCTCTTCGGCGGCGGCGGCGGCGATGACGGCGGCACGGAGGCAAGGCAGTGAAGGGTTGCACCGTTTCTCCTCAACTTCCGATTTGCGCGCCAGTTTTGCGGTGTACCATAGCGGCGGGCATAGCCCGTGTGATCGATGGAAGCCTGACGTGTCATTACTCACGGGCCCACAAATGAGTGACCACTTACTTTGGGTTTTAGATCCTTGTTGGGTGTAGAACATTGGGGGGAAAGGAACGAAAGGAGGAACCGGTTGATGGCCGATGGTTATCCAGGAATGTTTGTGGAGGAAATCTATTTTTGGCCGGTTTTAAAGGAAAGGAGGGTGTGGGGTAAAAAGGAAAATGGGGGGGCGAGGTTGGGCGGGCGGCGGGAGCTGAACGGAAGATGGCTGGCCGTGCGGCCCCCGGGGTAAGGAGCGGATCACTCCTAGGGGGGACTGGACAGTCGGCAGTTTCGTTGGGTGGTCGCCAGCAAACTGTAGAGCTGAAAGGTAAGAGGATGTTAGGTAATGCAATCA]

[+] EMBL BE040700             [GCATCTTGCGGCTTGCAAAGGGTTCGAAGATGTCGTCCAGTTCCTCCTCCACGAAGGCGTCGACATCGATCTTTCCGACAAATTTGGCGAAGCTGAGCCTGGGGCACGACGCCGCTGGACGAAGGGCGCAGGTGCGGGAGCCGGACGATGGTGCAGCTGCTGGAGGCGGCCAAGTCCGGCGAGCTCTCCAGGTACCCGGAGCGCGGCGAGGAGGTGCGGGACAAGATGCACCCGCGGCGGTGCTCCGTGTTCCCGCACCACCCGTGGGACGGCGGCGAGCGGCGGCGGGAAGGGGTGGTGGTGTGGATCCCGCACACCATCGAGGGGCTCGTCAGCTCGGCGCAGGAGAAGCTCGGCCTCGCCGGCTCCGGCGAGGGGCTCCGGCTGCTCGGCGAGGACGGCGCCAGAGTGCTCGACGTCGACATGGTCCACGACGGGCAGAAGCTCTACCTCTTCGGCGGCGGCGGCGGCGATGACGGCGGCACGGAGGCAAGGCAGTGAAGGGTTGCACCGTTTCTCCTCAACTTCCGATTTGCGCGCCAGTTTTGCGGTGTACCATAGCGGCGGGCATAGCCCGTGTGATCGATGGAAGCCTGACGTGTCATTACTCACGGGCCCACAAATGAGTGACCACTTACTTTGGGTTTTAGATCCTTGTTGGGTGTAGAACATTGGGGGGAAAGGAACGAAAGGAGGAACCGGTTGATGGCCGATGGTTATCCAGGAATGTTTGTGGAGGAAATCTATTTTTGGCCGGTTTTAAAGGAAAGGAGGGTGTGGGGTAAAAAGGAAAATGGGGGGGCGAGGTTGGGCGGGCGGCGGGAGCTGAACGGAAGATGGCTGGCCGTGCGGCCCCCGGGGTAAGGAGCGGATCACTCCTAGGGGGGACTGGACAGTCGGCAGTTTCGTTGGGTGGTCGCCAGCAAACTGTAGAGCTGAAAGGTAAGAGGATGTTAGGTAATGCAATCA]




>consensus_1945#0
GCATCTTGCGGCTTGCAAAGGGTTCGAAGATGTCGTCCAGTTCCTCCTCCACGAAGGCGT
CGACATCGATCTTTCCGACAAATTTGGCGAAGCTGAGCCTGGGGCACGACGCCGCTGGAC
GAAGGGCGCAGGTGCGGGAGCCGGACGATGGTGCAGCTGCTGGAGGCGGCCAAGTCCGGC
GAGCTCTCCAGGTACCCGGAGCGCGGCGAGGAGGTGCGGGACAAGATGCACCCGCGGCGG
TGCTCCGTGTTCCCGCACCACCCGTGGGACGGCGGCGAGCGGCGGCGGGAAGGGGTGGTG
GTGTGGATCCCGCACACCATCGAGGGGCTCGTCAGCTCGGCGCAGGAGAAGCTCGGCCTC
GCCGGCTCCGGCGAGGGGCTCCGGCTGCTCGGCGAGGACGGCGCCAGAGTGCTCGACGTC
GACATGGTCCACGACGGGCAGAAGCTCTACCTCTTCGGCGGCGGCGGCGGCGATGACGGC
GGCACGGAGGCAAGGCAGTGAAGGGTTGCACCGTTTCTCCTCAACTTCCGATTTGCGCGC
CAGTTTTGCGGTGTACCATAGCGGCGGGCATAGCCCGTGTGATCGATGGAAGCCTGACGT
GTCATTACTCACGGGCCCACAAATGAGTGACCACTTACTTTGGGTTTTAGATCCTTGTTG
GGTGTAGAACATTGGGGGGAAAGGAACGAAAGGAGGAACCGGTTGATGGCCGATGGTTAT
CCAGGAATGTTTGTGGAGGAAATCTATTTTTGGCCGGTTTTAAAGGAAAGGAGGGTGTGG
GGTAAAAAGGAAAATGGGGGGGCGAGGTTGGGCGGGCGGCGGGAGCTGAACGGAAGATGG
CTGGCCGTGCGGCCCCCGGGGTAAGGAGCGGATCACTCCTAGGGGGGACTGGACAGTCGG
CAGTTTCGTTGGGTGGTCGCCAGCAAACTGTAGAGCTGAAAGGTAAGAGGATGTTAGGTA
ATGCAATCA

consensusID : consensus_1945#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence

                              [GCCGGGAGCCACCTGTGCACGGCGGTGGCGAGGGGCGACACGGACTTCGTCCGGCGGGCGCTCGCCTACGGCGGCGACCCGAACGCGAGGGACTACGACCACCGCGCGCCGCTCCACATCGCCGCCGCCGAGGGCCTCTACCTGATGGCGAAGCTGCTCGTCGACGCCGGCGCCAGCGTGTTCGCCACCGACCGGTGGGGCACGACGCCGCTGGACGAAGGGCGCAGGTGCGGGAG]

[+] EMBL BE040479             [GCCGGGAGCCACCTGTGCACGGCGGTGGCGAGGGGCGACACGGACTTCGTCCGGCGGGCGCTCGCCTACGGCGGCGACCCGAACGCGAGGGACTACGACCACCGCGCGCCGCTCCACATCGCCGCCGCCGAGGGCCTCTACCTGATGGCGAAGCTGCTCGTCGACGCCGGCGCCAGCGTGTTCGCCACCGACCGGTGGGGCACGACGCCGCTGGACGAAGGGCGCAGGTGCGGGAG]




>consensus_1945#1
GCCGGGAGCCACCTGTGCACGGCGGTGGCGAGGGGCGACACGGACTTCGTCCGGCGGGCG
CTCGCCTACGGCGGCGACCCGAACGCGAGGGACTACGACCACCGCGCGCCGCTCCACATC
GCCGCCGCCGAGGGCCTCTACCTGATGGCGAAGCTGCTCGTCGACGCCGGCGCCAGCGTG
TTCGCCACCGACCGGTGGGGCACGACGCCGCTGGACGAAGGGCGCAGGTGCGGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1945#0      GCATCTTGCGGCTTGCAAAGGGTTCGAAGATGTCGTCCAGTTCCTCCTCCACGAAGGCGT 60
consensus_1945#1      ------------------------------------------------------------
                                                                                  

consensus_1945#0      CGACATCGATCTTTCCGACAAATTTGGCGAAGCTGAGCCTGGGGCACGACGCCGCTGGAC 120
consensus_1945#1      ------------------------------------------------------------
                                                                                  

consensus_1945#0      GAAGGGCGCAGGTGCGGGAGCCGGACGATGGTGCAGCTGCTGGAGGCGGCCAAGTCCGGC 180
consensus_1945#1      ------------------------------------------------------------
                                                                                  

consensus_1945#0      GAGCTCTCCAGGTACCCGGAGCGCGGCGAGGAGGTGCGGGACAAGATGCACCCGCGGCGG 240
consensus_1945#1      ------GCCGGGAGCCACCTGTGCACGGCGGTGGCGAGGGGCGACACGGACTTCGTCCGG 54
                             ** **  **    * **   * ** ** * *** * * * * **      ***

consensus_1945#0      TGCTCCGTGTTCCCGCACCACCCGTGGGACGGCGGCGAGCGGCGGCGGGAAGGG-GTGGT 299
consensus_1945#1      CG---GGCGCTCGCCTACGGCG-GCGACCCGAACGCGAGGGACTACGACCACCGCGCGCC 110
                       *    * * ** *  **  *  * *   **   ***** * *  **   *  * * *  

consensus_1945#0      GGTGTGGATCCCGCACACCATCGAGGGGCTCGTCAGCTCGGCGCAGGAGAAGCTCGGCCT 359
consensus_1945#1      GCTCCACATCGC---CGCCGCCGAGGGCCT---CTACCTGATGGCGAAGCTGCTCGTCGA 164
                      * *    *** *   * **  ****** **   *  *  *  *  * **  ***** *  

consensus_1945#0      CGCCGGCTCCGGCGAGG--GGCTCCGGCTGCTCGGCGAGGACGGCGCCAGAGTGCTCGAC 417
consensus_1945#1      CGCCGGCGCCAGCGTGTTCGCCACCGACCGGTGGGGCACGACGCCGCTGGA-CGAAGGGC 223
                      ******* ** *** *   * * *** * * * **  * **** ***  **  *   * *

consensus_1945#0      GTCGACATGGTCCACGACGGGCAGAAGCTCTACCTCTTCGGCGGCGGCGGCGGCGATGAC 477
consensus_1945#1      GCAGGTGCGGGAG----------------------------------------------- 236
                      *  *    **                                                  

consensus_1945#0      GGCGGCACGGAGGCAAGGCAGTGAAGGGTTGCACCGTTTCTCCTCAACTTCCGATTTGCG 537
consensus_1945#1      ------------------------------------------------------------
                                                                                  

consensus_1945#0      CGCCAGTTTTGCGGTGTACCATAGCGGCGGGCATAGCCCGTGTGATCGATGGAAGCCTGA 597
consensus_1945#1      ------------------------------------------------------------
                                                                                  

consensus_1945#0      CGTGTCATTACTCACGGGCCCACAAATGAGTGACCACTTACTTTGGGTTTTAGATCCTTG 657
consensus_1945#1      ------------------------------------------------------------
                                                                                  

consensus_1945#0      TTGGGTGTAGAACATTGGGGGGAAAGGAACGAAAGGAGGAACCGGTTGATGGCCGATGGT 717
consensus_1945#1      ------------------------------------------------------------
                                                                                  

consensus_1945#0      TATCCAGGAATGTTTGTGGAGGAAATCTATTTTTGGCCGGTTTTAAAGGAAAGGAGGGTG 777
consensus_1945#1      ------------------------------------------------------------
                                                                                  

consensus_1945#0      TGGGGTAAAAAGGAAAATGGGGGGGCGAGGTTGGGCGGGCGGCGGGAGCTGAACGGAAGA 837
consensus_1945#1      ------------------------------------------------------------
                                                                                  

consensus_1945#0      TGGCTGGCCGTGCGGCCCCCGGGGTAAGGAGCGGATCACTCCTAGGGGGGACTGGACAGT 897
consensus_1945#1      ------------------------------------------------------------
                                                                                  

consensus_1945#0      CGGCAGTTTCGTTGGGTGGTCGCCAGCAAACTGTAGAGCTGAAAGGTAAGAGGATGTTAG 957
consensus_1945#1      ------------------------------------------------------------
                                                                                  

consensus_1945#0      GTAATGCAATCA 969
consensus_1945#1      ------------