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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1989#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2437 fasta sequence
[CGGCGCCGCCCCATCTCAGCCGGACACCGCGGCGGCGGCGGCGGCGGACAGGCTGTTCGCGCAGAACCGGCCGGGACGCATTGTTCCGTCGGTCGCGCGATCCAGGCCGGAGGAGAGGGGAGGAAGGAGGGGGTGGGTGAGTCAACCTCTCTCTCTCTCTGATCGGAGGTGGTAGCCCTCCTCCTCGTCGCCGGGAGGCGGCTGATGCGGCGCCCATGGCCACGGCGGTGCTCACCTACCTGCAGAGCCTGTGGTCGCTCTCCGCTCTCCTGAGGGAGGACGACCTGCGGGCGTCCGCGCGGCTGCTGCGGGGCGTCCCCGTGCCGGAGGAGACGAAGCAGTTCGTGCTCGCGCTCCGCGACCGCGAGCCCGGCTCCGGCTCGCGCGGGGGCGTGATCTACATCCTCGCGGCGCAGAACCTGTCCGAGCGGTCGGCCTCCGACGCCGACTCCCTGATCAGGCGGGTGCGCCCCGCCGCCGTGGTCACGCAGCTCGCGCACACGGCGGCCGACGACGTCCGGGCCGAGGAGGAGTGCCTCGAGGGCGGCGGGGCCGGCGGCGTCCCGGCGTCCCCGTTCCAGGTGATCAAGAGGTGCGTCACGGAGAAGAGGAGCAAGGATCAGTACGTCAAGGCGGCGGCGTGCCAGGTCTTGCAGGAGATTTTCGGGGTCGGGTTCTACGGCCATGTCTTGGCCGCGAAGAGAGCCGCGGAGGAGACGGGCTCGTGTTTTCTTTTGCTCGAGTCTCCGTATGAGAGGAATTGCAATGGCGGCGCATCGGGTGGCCAATCTACCATGGAAGAAGGCTCAGGTCAGCAATTGGCGAGTCGCTGCTCGCTCGCTCAAAGTTCAACGGATGATGGCACGGGTGGACAGTCACAGGGTAGCTGCTTGCTCACTCAGAGCACCAGTTCAATCGTAAGCTCGCATGTCAGGAAGATATGCCTTGTGGATGACATTGGGGGACAACTCGTGAAGTCGCTAGCGCCGACCGTTAATTTGTTGATGTCCCAGGCTATCTCTTCTGATGGTGTTTCAGAGTGCAAACTGGCTGAATGCAAGCCATCGGACAGATACGAGGCTCCACCTTTTGCACAGACTGTTTATCCGTTGCTTGCTGATCTTTATGATATATTTGTGGACATTCCGTCAATTGGAAAAGCTATGGCTTCTGCTCAGGAATTGCTCAGACAAGTTCATGATGGGAAGCCAATTTCCACTGAAATGCTGTCTGATGTGTATGTATTTAGGATCGCAATAGAAGCCCTCAGGATAGGTTTAAACAACGCAGGAAGAAGCCACATTGACACCAGAGATAATCATGGTTCAAAAAAATTGGATTTTTCAGAACTCAACTCTGAGGAGAAATGCCATATTCTTCTTGTGCAAGCCCTCAGAAGCCAGGTTAGGGAGTTTGGTTCTGTGGTGGCTGTAGTCGATGCCAGTTGCTTAGCTGGAATAAGGAGACACTGGGATACCCCTGTTCCTTCAGAGATTGCACAATTAGCCAGCAGTTGCTTCAAGCAATACGGCAATAAAAATGACAGTGAGGACAATGAGCTGCCATCATCAGTTGACAGCACAGATAAAAAGAGTTGGGTAGCTGAGAAACCTGTGGTCGTAGTTGGTGCAGGAGGAACAGCGATTCTGGGCTTTTCATCTTTATCAAAAACTGTACAGGCATCTGCCTTTCTTAAGCTGGCTCCCTATAAAACACCGGTGGTCCTGAAGTATGGCTTAATACAGCTGCAAAGGCATGCTTCCATCGTGTTAAGCAAGGTCCTATCGAATGGGGTTTTTAGTGCTAGTTCAAACGCATCCGTTTTACAATTCACAGCTTCATCGGAGAAGATTCGAGCAGTTACTCACACTGTAATTTCATCAGCAAAGAGAACTAGCTTGATGGCTATGCGAACTTCGTTCTACGAAATAATGCAGAAGAGGCAAAAACAACCTTTCAGGATCACTCCTTGGGCAACATTTGGTTGCAGCATGGCTGCATGCGCTGGTCTCCTGATGCATGGAGACGGGATTGAGTGTGCTGCTGAGGTCGCACCTTCTGTTCCCATGATTGCCACTCTGGGACGTGGTCTTGAGATCCTGCGCCTCACATCGCAGGAAGTGAGGCAAACAAGGGGCCAACATATAAAGGAAGCTTTGGGCGCGCTGATGAGCAACTTAAAGAAAACAGCAAAATAAAGACATAACAAAAAAATAACTGAGACTGTATAGATTTCCATCATGCAATTTTGTTGTTAGATAGATTTTTTTTTGTTACCTCTGTACAGTGCATTCTTCTTGCTTTTACTGAGGTAATCGAATTCCTACAATGTGTTTTGGGGCGGTTCTACTTCTGGAGCATTTCATCCATATCAGCCCACCAACCTTCTGTACATACATGTATACAACATATGCCTAATTGACATCTCTAATGCTTT]
[+] EMBL AK072099 [CGGCGCCGCCCCATCTCAGCCGGACACCGCGGCGGCGGCGGCGGCGGACAGGCTGTTCGCGCAGAACCGGCCGGGACGCATTGTTCCGTCGGTCGCGCGATCCAGGCCGGAGGAGAGGGGAGGAAGGAGGGGGTGGGTGAGTCAACCTCTCTCTCTCTCTGATCGGAGGTGGTAGCCCTCCTCCTCGTCGCCGGGAGGCGGCTGATGCGGCGCCCATGGCCACGGCGGTGCTCACCTACCTGCAGAGCCTGTGGTCGCTCTCCGCTCTCCTGAGGGAGGACGACCTGCGGGCGTCCGCGCGGCTGCTGCGGGGCGTCCCCGTGCCGGAGGAGACGAAGCAGTTCGTGCTCGCGCTCCGCGACCGCGAGCCCGGCTCCGGCTCGCGCGGGGGCGTGATCTACATCCTCGCGGCGCAGAACCTGTCCGAGCGGTCGGCCTCCGACGCCGACTCCCTGATCAGGCGGGTGCGCCCCGCCGCCGTGGTCACGCAGCTCGCGCACACGGCGGCCGACGACGTCCGGGCCGAGGAGGAGTGCCTCGAGGGCGGCGGGGCCGGCGGCGTCCCGGCGTCCCCGTTCCAGGTGATCAAGAGGTGCGTCACGGAGAAGAGGAGCAAGGATCAGTACGTCAAGGCGGCGGCGTGCCAGGTCTTGCAGGAGATTTTCGGGGTCGGGTTCTACGGCCATGTCTTGGCCGCGAAGAGAGCCGCGGAGGAGACGGGCTCGTGTTTTCTTTTGCTCGAGTCTCCGTATGAGAGGAATTGCAATGGCGGCGCATCGGGTGGCCAATCTACCATGGAAGAAGGCTCAGGTCAGCAATTGGCGAGTCGCTGCTCGCTCGCTCAAAGTTCAACGGATGATGGCACGGGTGGACAGTCACAGGGTAGCTGCTTGCTCACTCAGAGCACCAGTTCAATCGTAAGCTCGCATGTCAGGAAGATATGCCTTGTGGATGACATTGGGGGACAACTCGTGAAGTCGCTAGCGCCGACCGTTAATTTGTTGATGTCCCAGGCTATCTCTTCTGATGGTGTTTCAGAGTGCAAACTGGCTGAATGCAAGCCATCGGACAGATACGAGGCTCCACCTTTTGCACAGACTGTTTATCCGTTGCTTGCTGATCTTTATGATATATTTGTGGACATTCCGTCAATTGGAAAAGCTATGGCTTCTGCTCAGGAATTGCTCAGACAAGTTCATGATGGGAAGCCAATTTCCACTGAAATGCTGTCTGATGTGTATGTATTTAGGATCGCAATAGAAGCCCTCAGGATAGGTTTAAACAACGCAGGAAGAAGCCACATTGACACCAGAGATAATCATGGTTCAAAAAAATTGGATTTTTCAGAACTCAACTCTGAGGAGAAATGCCATATTCTTCTTGTGCAAGCCCTCAGAAGCCAGGTTAGGGAGTTTGGTTCTGTGGTGGCTGTAGTCGATGCCAGTTGCTTAGCTGGAATAAGGAGACACTGGGATACCCCTGTTCCTTCAGAGATTGCACAATTAGCCAGCAGTTGCTTCAAGCAATACGGCAATAAAAATGACAGTGAGGACAATGAGCTGCCATCATCAGTTGACAGCACAGATAAAAAGAGTTGGGTAGCTGAGAAACCTGTGGTCGTAGTTGGTGCAGGAGGAACAGCGATTCTGGGCTTTTCATCTTTATCAAAAACTGTACAGGCATCTGCCTTTCTTAAGCTGGCTCCCTATAAAACACCGGTGGTCCTGAAGTATGGCTTAATACAGCTGCAAAGGCATGCTTCCATCGTGTTAAGCAAGGTCCTATCGAATGGGGTTTTTAGTGCTAGTTCAAACGCATCCGTTTTACAATTCACAGCTTCATCGGAGAAGATTCGAGCAGTTACTCACACTGTAATTTCATCAGCAAAGAGAACTAGCTTGATGGCTATGCGAACTTCGTTCTACGAAATAATGCAGAAGAGGCAAAAACAACCTTTCAGGATCACTCCTTGGGCAACATTTGGTTGCAGCATGGCTGCATGCGCTGGTCTCCTGATGCATGGAGACGGGATTGAGTGTGCTGCTGAGGTCGCACCTTCTGTTCCCATGATTGCCACTCTGGGACGTGGTCTTGAGATCCTGCGCCTCACATCGCAGGAAGTGAGGCAAACAAGGGGCCAACATATAAAGGAAGCTTTGGGCGCGCTGATGAGCAACTTAAAGAAAACAGCAAAATAAAGACATAACAAAAAAATAACTGAGACTGTATAGATTTCCATCATGCAATTTTGTTGTTAGATAGATTTTTTTTTGTTACCTCTGTACAGTGCATTCTTCTTGCTTTTACTGAGGTAATCGAATTCCTACAATGTGTTTTGGGGCGGTTCTACTTCTGGAGCATTTCATCCATATCAGCCCACCAACCTTCTGTACATACATGTATACAACATATGCCTAATTGACATCTCTAATGCTTT]
consensusID : consensus_1989#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence
[AGAAGATTCGACCAGTTACTCACACTGTAATTTCATCACCAAAGAGAACTAGCTTGATGGCTATGCGAACTTCGTTCTACGAAATAATGCAGAAGAGCAAAACACACCTTTCAGGATCACTCCTTGGCAACATTTGGTTGCAGCATGGCTGCATGCGCTGGTCTCCTGATGCACTGGAGACGGGATTGAGTGTGCTGCTGAGGTCGCACCTTCTGTTCCCATGATTGCCACTCTGGGACGTGGTCTTGAGATCCTGCGCCTCACATCGCAGGAAGTGAGCACAACCAAGGGGCCAACATATAAAGGAAGCTTTGGGCGCGCTGATGAGCAACTTAAAGAAAACAGCCAAATAAAGACATAACCAAAAAATAACTGAGACTGTATAGATTTCCATCATGCAATTTTGTTGTTAGATAGATTTTTTTTTGTTACCTCTGTACAGTGCATTCTTCTTGCTTTTACTGAGGTAATCGAATTCCTACATGTGTTTTGGGGCGGTTCAAAAAAAAAAAAA]
[+] EMBL BI812455 [AGAAGATTCGACCAGTTACTCACACTGTAATTTCATCACCAAAGAGAACTAGCTTGATGGCTATGCGAACTTCGTTCTACGAAATAATGCAGAAGAGCAAAACACACCTTTCAGGATCACTCCTTGGCAACATTTGGTTGCAGCATGGCTGCATGCGCTGGTCTCCTGATGCACTGGAGACGGGATTGAGTGTGCTGCTGAGGTCGCACCTTCTGTTCCCATGATTGCCACTCTGGGACGTGGTCTTGAGATCCTGCGCCTCACATCGCAGGAAGTGAGCACAACCAAGGGGCCAACATATAAAGGAAGCTTTGGGCGCGCTGATGAGCAACTTAAAGAAAACAGCCAAATAAAGACATAACCAAAAAATAACTGAGACTGTATAGATTTCCATCATGCAATTTTGTTGTTAGATAGATTTTTTTTTGTTACCTCTGTACAGTGCATTCTTCTTGCTTTTACTGAGGTAATCGAATTCCTACATGTGTTTTGGGGCGGTTCAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1989#0 CGGCGCCGCCCCATCTCAGCCGGACACCGCGGCGGCGGCGGCGGCGGACAGGCTGTTCGC 60
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 GCAGAACCGGCCGGGACGCATTGTTCCGTCGGTCGCGCGATCCAGGCCGGAGGAGAGGGG 120
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 AGGAAGGAGGGGGTGGGTGAGTCAACCTCTCTCTCTCTCTGATCGGAGGTGGTAGCCCTC 180
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 CTCCTCGTCGCCGGGAGGCGGCTGATGCGGCGCCCATGGCCACGGCGGTGCTCACCTACC 240
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 TGCAGAGCCTGTGGTCGCTCTCCGCTCTCCTGAGGGAGGACGACCTGCGGGCGTCCGCGC 300
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 GGCTGCTGCGGGGCGTCCCCGTGCCGGAGGAGACGAAGCAGTTCGTGCTCGCGCTCCGCG 360
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 ACCGCGAGCCCGGCTCCGGCTCGCGCGGGGGCGTGATCTACATCCTCGCGGCGCAGAACC 420
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 TGTCCGAGCGGTCGGCCTCCGACGCCGACTCCCTGATCAGGCGGGTGCGCCCCGCCGCCG 480
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 TGGTCACGCAGCTCGCGCACACGGCGGCCGACGACGTCCGGGCCGAGGAGGAGTGCCTCG 540
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 AGGGCGGCGGGGCCGGCGGCGTCCCGGCGTCCCCGTTCCAGGTGATCAAGAGGTGCGTCA 600
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 CGGAGAAGAGGAGCAAGGATCAGTACGTCAAGGCGGCGGCGTGCCAGGTCTTGCAGGAGA 660
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 TTTTCGGGGTCGGGTTCTACGGCCATGTCTTGGCCGCGAAGAGAGCCGCGGAGGAGACGG 720
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 GCTCGTGTTTTCTTTTGCTCGAGTCTCCGTATGAGAGGAATTGCAATGGCGGCGCATCGG 780
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 GTGGCCAATCTACCATGGAAGAAGGCTCAGGTCAGCAATTGGCGAGTCGCTGCTCGCTCG 840
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 CTCAAAGTTCAACGGATGATGGCACGGGTGGACAGTCACAGGGTAGCTGCTTGCTCACTC 900
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 AGAGCACCAGTTCAATCGTAAGCTCGCATGTCAGGAAGATATGCCTTGTGGATGACATTG 960
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 GGGGACAACTCGTGAAGTCGCTAGCGCCGACCGTTAATTTGTTGATGTCCCAGGCTATCT 1020
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 CTTCTGATGGTGTTTCAGAGTGCAAACTGGCTGAATGCAAGCCATCGGACAGATACGAGG 1080
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 CTCCACCTTTTGCACAGACTGTTTATCCGTTGCTTGCTGATCTTTATGATATATTTGTGG 1140
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 ACATTCCGTCAATTGGAAAAGCTATGGCTTCTGCTCAGGAATTGCTCAGACAAGTTCATG 1200
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 ATGGGAAGCCAATTTCCACTGAAATGCTGTCTGATGTGTATGTATTTAGGATCGCAATAG 1260
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 AAGCCCTCAGGATAGGTTTAAACAACGCAGGAAGAAGCCACATTGACACCAGAGATAATC 1320
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 ATGGTTCAAAAAAATTGGATTTTTCAGAACTCAACTCTGAGGAGAAATGCCATATTCTTC 1380
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 TTGTGCAAGCCCTCAGAAGCCAGGTTAGGGAGTTTGGTTCTGTGGTGGCTGTAGTCGATG 1440
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 CCAGTTGCTTAGCTGGAATAAGGAGACACTGGGATACCCCTGTTCCTTCAGAGATTGCAC 1500
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 AATTAGCCAGCAGTTGCTTCAAGCAATACGGCAATAAAAATGACAGTGAGGACAATGAGC 1560
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 TGCCATCATCAGTTGACAGCACAGATAAAAAGAGTTGGGTAGCTGAGAAACCTGTGGTCG 1620
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 TAGTTGGTGCAGGAGGAACAGCGATTCTGGGCTTTTCATCTTTATCAAAAACTGTACAGG 1680
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 CATCTGCCTTTCTTAAGCTGGCTCCCTATAAAACACCGGTGGTCCTGAAGTATGGCTTAA 1740
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 TACAGCTGCAAAGGCATGCTTCCATCGTGTTAAGCAAGGTCCTATCGAATGGGGTTTTTA 1800
consensus_1989#1 ------------------------------------------------------------
consensus_1989#0 GTGCTAGTTCAAACGCATCCGTTTTACAATTCACAGCTTCATCGGAGAAGATTCGAGCAG 1860
consensus_1989#1 ---------------------------------------------AGAAGATTCGACCAG 15
*********** ***
consensus_1989#0 TTACTCACACTGTAATTTCATCAGCAAAGAGAACTAGCTTGATGGCTATGCGAACTTCGT 1920
consensus_1989#1 TTACTCACACTGTAATTTCATCACCAAAGAGAACTAGCTTGATGGCTATGCGAACTTCGT 75
*********************** ************************************
consensus_1989#0 TCTACGAAATAATGCAGAAGAGGCAAAAACAACCTTTCAGGATCACTCCTTGGGCAACAT 1980
consensus_1989#1 TCTACGAAATAATGCAGAAGAGCAAAACACA-CCTTTCAGGATCACTCCTTGG-CAACAT 133
********************** *** *** ********************* ******
consensus_1989#0 TTGGTTGCAGCATGGCTGCATGCGCTGGTCTCCTGATGCA-TGGAGACGGGATTGAGTGT 2039
consensus_1989#1 TTGGTTGCAGCATGGCTGCATGCGCTGGTCTCCTGATGCACTGGAGACGGGATTGAGTGT 193
**************************************** *******************
consensus_1989#0 GCTGCTGAGGTCGCACCTTCTGTTCCCATGATTGCCACTCTGGGACGTGGTCTTGAGATC 2099
consensus_1989#1 GCTGCTGAGGTCGCACCTTCTGTTCCCATGATTGCCACTCTGGGACGTGGTCTTGAGATC 253
************************************************************
consensus_1989#0 CTGCGCCTCACATCGCAGGAAGTGAG-GCAAACAAGGGGCCAACATATAAAGGAAGCTTT 2158
consensus_1989#1 CTGCGCCTCACATCGCAGGAAGTGAGCACAACCAAGGGGCCAACATATAAAGGAAGCTTT 313
************************** *** ****************************
consensus_1989#0 GGGCGCGCTGATGAGCAACTTAAAGAAAACAGCAAAATAAAGACATAACAAAAAAATAAC 2218
consensus_1989#1 GGGCGCGCTGATGAGCAACTTAAAGAAAACAGCCAAATAAAGACATAACCAAAAAATAAC 373
********************************* *************** **********
consensus_1989#0 TGAGACTGTATAGATTTCCATCATGCAATTTTGTTGTTAGATAGATTTTTTTTTGTTACC 2278
consensus_1989#1 TGAGACTGTATAGATTTCCATCATGCAATTTTGTTGTTAGATAGATTTTTTTTTGTTACC 433
************************************************************
consensus_1989#0 TCTGTACAGTGCATTCTTCTTGCTTTTACTGAGGTAATCGAATTCCTACAATGTGTTTTG 2338
consensus_1989#1 TCTGTACAGTGCATTCTTCTTGCTTTTACTGAGGTAATCGAATTCCTACA-TGTGTTTTG 492
************************************************** *********
consensus_1989#0 GGGCGGTTCTACTTCTGGAGCATTTCATCCATATCAGCCCACCAACCTTCTGTACATACA 2398
consensus_1989#1 GGGCGGTTCAAAAAAAAAAAAA-------------------------------------- 514
********* * * *
consensus_1989#0 TGTATACAACATATGCCTAATTGACATCTCTAATGCTTT 2437
consensus_1989#1 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||