cluster # 2006

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Oryza sativa
cluster # 2006 cluster # 2006 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2006#0 length = 353 sequences # 1

consensus_2006#1 length = 297 sequences # 1

consensusID : consensus_2006#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence

                              [CGCCGCCGACCGCTGCTNCTCGGGCTGNCGGCGCGCTGCTTGGTTTCGTGCCGGCGGTCGCCATCAGCTCCCTCCTCCGCCCCTTTGGGTTCGTTCCAGACTGAAGACGAGATACAAGGTCACACATAATACATTTTGCTGCCATTTCTGACGTGAGATACAGTGACGGTAGGAACTAGGAAGAAATGCTAATGTCATCGATCGAACTTCTCACTTGCCTTTATCGCTGTGATAGTACACAGAAGGAACATTGACATCGAGCTGGAAGTTTTGTCATTTCGAGAATACNCGTGTTTGAGTGGCTAATGTCACCGATCGAACTTCTCACTTGCCTTAAAAAAAAAAAAAAAAAA]

[+] EMBL AU029745             [CGCCGCCGACCGCTGCTNCTCGGGCTGNCGGCGCGCTGCTTGGTTTCGTGCCGGCGGTCGCCATCAGCTCCCTCCTCCGCCCCTTTGGGTTCGTTCCAGACTGAAGACGAGATACAAGGTCACACATAATACATTTTGCTGCCATTTCTGACGTGAGATACAGTGACGGTAGGAACTAGGAAGAAATGCTAATGTCATCGATCGAACTTCTCACTTGCCTTTATCGCTGTGATAGTACACAGAAGGAACATTGACATCGAGCTGGAAGTTTTGTCATTTCGAGAATACNCGTGTTTGAGTGGCTAATGTCACCGATCGAACTTCTCACTTGCCTTAAAAAAAAAAAAAAAAAA]




>consensus_2006#0
CGCCGCCGACCGCTGCTNCTCGGGCTGNCGGCGCGCTGCTTGGTTTCGTGCCGGCGGTCG
CCATCAGCTCCCTCCTCCGCCCCTTTGGGTTCGTTCCAGACTGAAGACGAGATACAAGGT
CACACATAATACATTTTGCTGCCATTTCTGACGTGAGATACAGTGACGGTAGGAACTAGG
AAGAAATGCTAATGTCATCGATCGAACTTCTCACTTGCCTTTATCGCTGTGATAGTACAC
AGAAGGAACATTGACATCGAGCTGGAAGTTTTGTCATTTCGAGAATACNCGTGTTTGAGT
GGCTAATGTCACCGATCGAACTTCTCACTTGCCTTAAAAAAAAAAAAAAAAAA

consensusID : consensus_2006#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 297
fasta sequence

                              [GGGTTCGTTCCNGACTGAAGACGAGATACAAGGTCACACATAATACATTTTGNTGCCATTTCTGACGTGNGATACANTGACGGTAGGAACTAGGAAGAAATGCTAATGTCATCGATCGAACTTCTCACTTGCCTTTATCGCTGTGATAGTACACAGAAGGAACATTGACATCGAGCTGGAAGTTTTGTCATTTCGAGAATACGCGTGTTTGAGTGGCTAATGTCACCGATCGAACTTCTCACTTGCCTTCATCGTTGTTATAGTACACAGAAAGAACATTGACATCGATCAAAAAAA]

[+] EMBL C99253               [GGGTTCGTTCCNGACTGAAGACGAGATACAAGGTCACACATAATACATTTTGNTGCCATTTCTGACGTGNGATACANTGACGGTAGGAACTAGGAAGAAATGCTAATGTCATCGATCGAACTTCTCACTTGCCTTTATCGCTGTGATAGTACACAGAAGGAACATTGACATCGAGCTGGAAGTTTTGTCATTTCGAGAATACGCGTGTTTGAGTGGCTAATGTCACCGATCGAACTTCTCACTTGCCTTCATCGTTGTTATAGTACACAGAAAGAACATTGACATCGATCAAAAAAA]




>consensus_2006#1
GGGTTCGTTCCNGACTGAAGACGAGATACAAGGTCACACATAATACATTTTGNTGCCATT
TCTGACGTGNGATACANTGACGGTAGGAACTAGGAAGAAATGCTAATGTCATCGATCGAA
CTTCTCACTTGCCTTTATCGCTGTGATAGTACACAGAAGGAACATTGACATCGAGCTGGA
AGTTTTGTCATTTCGAGAATACGCGTGTTTGAGTGGCTAATGTCACCGATCGAACTTCTC
ACTTGCCTTCATCGTTGTTATAGTACACAGAAAGAACATTGACATCGATCAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2006#0      CGCCGCCGACCGCTGCTNCTCGGGCTGNCGGCGCGCTGCTTGGTTTCGTGCCGGCGGTCG 60
consensus_2006#1      ------------------------------------------------------------
                                                                                  

consensus_2006#0      CCATCAGCTCCCTCCTCCGCCCCTTTGGGTTCGTTCCAGACTGAAGACGAGATACAAGGT 120
consensus_2006#1      --------------------------GGGTTCGTTCCNGACTGAAGACGAGATACAAGGT 34
                                                *********** **********************

consensus_2006#0      CACACATAATACATTTTGCTGCCATTTCTGACGTGAGATACAGTGACGGTAGGAACTAGG 180
consensus_2006#1      CACACATAATACATTTTGNTGCCATTTCTGACGTGNGATACANTGACGGTAGGAACTAGG 94
                      ****************** **************** ****** *****************

consensus_2006#0      AAGAAATGCTAATGTCATCGATCGAACTTCTCACTTGCCTTTATCGCTGTGATAGTACAC 240
consensus_2006#1      AAGAAATGCTAATGTCATCGATCGAACTTCTCACTTGCCTTTATCGCTGTGATAGTACAC 154
                      ************************************************************

consensus_2006#0      AGAAGGAACATTGACATCGAGCTGGAAGTTTTGTCATTTCGAGAATACNCGTGTTTGAGT 300
consensus_2006#1      AGAAGGAACATTGACATCGAGCTGGAAGTTTTGTCATTTCGAGAATACGCGTGTTTGAGT 214
                      ************************************************ ***********

consensus_2006#0      GGCTAATGTCACCGATCGAACTTCTCACTTGCCTTAA--------AAAAAAAAAAAAAAA 352
consensus_2006#1      GGCTAATGTCACCGATCGAACTTCTCACTTGCCTTCATCGTTGTTATAGTACACAGAAAG 274
                      *********************************** *        * *  * * * *** 

consensus_2006#0      A---------------------- 353
consensus_2006#1      AACATTGACATCGATCAAAAAAA 297
                      *