cluster # 2017

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Oryza sativa
cluster # 2017 cluster # 2017 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2017#0 length = 384 sequences # 1

consensus_2017#1 length = 288 sequences # 1

consensusID : consensus_2017#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGAAAACTAAATTTTTTTCTTTTCGTTGGGTCCAAAAACAGGGCAAATAAATTCAACCTTGTTTTTGCCCGGCTTTTATAAAACGGGCGGGGAAAAATCCCGGCCCCCCCCAACAATGTTCCTTCCACCTCTTCTTTTTTGGGAAACCCCTGACCCCCTAAAGGGGGCAAAATAGGGCCTGCCCCAGTTCTTTTTTCCTCCTTTCAAACCCAAAAAAAAAAAACCCTTTCCCCCCCAGAAACAGCACCAGCACCAAAGCTCCCCCTTCATCCCTTGTAAGGGCCCAAGGGCAAATTCCCGGCCCCTAAATTCAATTCCCCCTTTAGGGG]

[+] EMBL CF317453             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGAAAACTAAATTTTTTTCTTTTCGTTGGGTCCAAAAACAGGGCAAATAAATTCAACCTTGTTTTTGCCCGGCTTTTATAAAACGGGCGGGGAAAAATCCCGGCCCCCCCCAACAATGTTCCTTCCACCTCTTCTTTTTTGGGAAACCCCTGACCCCCTAAAGGGGGCAAAATAGGGCCTGCCCCAGTTCTTTTTTCCTCCTTTCAAACCCAAAAAAAAAAAACCCTTTCCCCCCCAGAAACAGCACCAGCACCAAAGCTCCCCCTTCATCCCTTGTAAGGGCCCAAGGGCAAATTCCCGGCCCCTAAATTCAATTCCCCCTTTAGGGG]




>consensus_2017#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGAAA
ACTAAATTTTTTTCTTTTCGTTGGGTCCAAAAACAGGGCAAATAAATTCAACCTTGTTTT
TGCCCGGCTTTTATAAAACGGGCGGGGAAAAATCCCGGCCCCCCCCAACAATGTTCCTTC
CACCTCTTCTTTTTTGGGAAACCCCTGACCCCCTAAAGGGGGCAAAATAGGGCCTGCCCC
AGTTCTTTTTTCCTCCTTTCAAACCCAAAAAAAAAAAACCCTTTCCCCCCCAGAAACAGC
ACCAGCACCAAAGCTCCCCCTTCATCCCTTGTAAGGGCCCAAGGGCAAATTCCCGGCCCC
TAAATTCAATTCCCCCTTTAGGGG

consensusID : consensus_2017#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAGAAAACCAAATTTCTTTCTTTTGGGGGGGCCCAAAAACCGGGGGAAAAAATCCAACCCTGTTTTTGCCCGGCTTTTTTAAAACGGGCGGGGAAAAATCCGGGCCCCCCCCAACAAGGTTCCTTCCCCCTCATCTTTTTTGGGAAACCCCGGCCCCCCTAGAGGGGGCAAAATAGGGGCGGCCCCAGTTTTTTTTTCCCCCTTTCAAACCCCGAAAAAAAATACCCTT]

[+] EMBL CF331938             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAGAAAACCAAATTTCTTTCTTTTGGGGGGGCCCAAAAACCGGGGGAAAAAATCCAACCCTGTTTTTGCCCGGCTTTTTTAAAACGGGCGGGGAAAAATCCGGGCCCCCCCCAACAAGGTTCCTTCCCCCTCATCTTTTTTGGGAAACCCCGGCCCCCCTAGAGGGGGCAAAATAGGGGCGGCCCCAGTTTTTTTTTCCCCCTTTCAAACCCCGAAAAAAAATACCCTT]




>consensus_2017#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA
AGAAAACCAAATTTCTTTCTTTTGGGGGGGCCCAAAAACCGGGGGAAAAAATCCAACCCT
GTTTTTGCCCGGCTTTTTTAAAACGGGCGGGGAAAAATCCGGGCCCCCCCCAACAAGGTT
CCTTCCCCCTCATCTTTTTTGGGAAACCCCGGCCCCCCTAGAGGGGGCAAAATAGGGGCG
GCCCCAGTTTTTTTTTCCCCCTTTCAAACCCCGAAAAAAAATACCCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2017#0      -----TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 55
consensus_2017#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA 60
                           *************************************************** ***

consensus_2017#0      AGAAAACTAAATTTTTTTCTTTTCGTTGGGTCCAAAAACAGGGCAAATAAATTCAACCTT 115
consensus_2017#1      AGAAAACCAAATTTCTTTCTTTTGGGGGGGCCCAAAAACCGGGGGAAAAAATCCAACCCT 120
                      ******* ****** ******** *  *** ******** ***  ** **** ***** *

consensus_2017#0      GTTTTTGCCCGGCTTTTATAAAACGGGCGGGGAAAAATCCCGGCCCCCCCCAACAATGTT 175
consensus_2017#1      GTTTTTGCCCGGCTTTTTTAAAACGGGCGGGGAAAAATCCGGGCCCCCCCCAACAAGGTT 180
                      ***************** ********************** *************** ***

consensus_2017#0      CCTTCCACCTCTTCTTTTTTGGGAAACCCCTGACCCCCTAAAGGGGGCAAAATAGGGCCT 235
consensus_2017#1      CCTTCCCCCTCATCTTTTTTGGGAAACCCCGGCCCCCCTAGAGGGGGCAAAATAGGGGCG 240
                      ****** **** ****************** * ******* **************** * 

consensus_2017#0      GCCCCAGTTCTTTTTTCCTCCTTTCAAACCCAAAAAAAAAAAACCCTTTCCCCCCCAGAA 295
consensus_2017#1      GCCCCAGTTTTTTTTTCCCCCTTTCAAACCCCGAAAAAAAATACCCTT------------ 288
                      ********* ******** ************  ******** ******            

consensus_2017#0      ACAGCACCAGCACCAAAGCTCCCCCTTCATCCCTTGTAAGGGCCCAAGGGCAAATTCCCG 355
consensus_2017#1      ------------------------------------------------------------
                                                                                  

consensus_2017#0      GCCCCTAAATTCAATTCCCCCTTTAGGGG 384
consensus_2017#1      -----------------------------