cluster # 2097

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2097 cluster # 2097 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2097#0 length = 420 sequences # 1

consensus_2097#1 length = 420 sequences # 1

consensusID : consensus_2097#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence

                              [CCATATGGGGCGTGCCTATCTGGAATGTGTGTGCTGATGATTGGGCTGTGCTGGATGGGTGGCTGGAATACAATGCTGCAAAGCCTGGCAGGAGAATGCGCCTATGCATCGGANGATGACCCATTGTGTGCTGAATGCTTGGAGGGCTGGTGTGCAAGAATGGAAGGCAAGTTGAGAAGAGTAAAGGAAGAAGGAAGGGCATATTGCTTCAAGTAGATTGGTTGGCTGCTGGCAGTTTGTNATTGGATTGCCATGGTGTTTGTTGGTTTCTGTGTATGGTATGTAGAGGGAGCTCGAATTTGAGAGTTGAGTCCGCTGTTGTAAAGGATTCGTCGTCATTCGTTCATTCATAGGCTCCATTTTGTTGTAAAGCAAGCTGAAGGAACGATGTTCCAACAAAATACTCGTGCCAAAAAAAAA]

[+] EMBL BQ908250             [CCATATGGGGCGTGCCTATCTGGAATGTGTGTGCTGATGATTGGGCTGTGCTGGATGGGTGGCTGGAATACAATGCTGCAAAGCCTGGCAGGAGAATGCGCCTATGCATCGGANGATGACCCATTGTGTGCTGAATGCTTGGAGGGCTGGTGTGCAAGAATGGAAGGCAAGTTGAGAAGAGTAAAGGAAGAAGGAAGGGCATATTGCTTCAAGTAGATTGGTTGGCTGCTGGCAGTTTGTNATTGGATTGCCATGGTGTTTGTTGGTTTCTGTGTATGGTATGTAGAGGGAGCTCGAATTTGAGAGTTGAGTCCGCTGTTGTAAAGGATTCGTCGTCATTCGTTCATTCATAGGCTCCATTTTGTTGTAAAGCAAGCTGAAGGAACGATGTTCCAACAAAATACTCGTGCCAAAAAAAAA]




>consensus_2097#0
CCATATGGGGCGTGCCTATCTGGAATGTGTGTGCTGATGATTGGGCTGTGCTGGATGGGT
GGCTGGAATACAATGCTGCAAAGCCTGGCAGGAGAATGCGCCTATGCATCGGANGATGAC
CCATTGTGTGCTGAATGCTTGGAGGGCTGGTGTGCAAGAATGGAAGGCAAGTTGAGAAGA
GTAAAGGAAGAAGGAAGGGCATATTGCTTCAAGTAGATTGGTTGGCTGCTGGCAGTTTGT
NATTGGATTGCCATGGTGTTTGTTGGTTTCTGTGTATGGTATGTAGAGGGAGCTCGAATT
TGAGAGTTGAGTCCGCTGTTGTAAAGGATTCGTCGTCATTCGTTCATTCATAGGCTCCAT
TTTGTTGTAAAGCAAGCTGAAGGAACGATGTTCCAACAAAATACTCGTGCCAAAAAAAAA

consensusID : consensus_2097#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence

                              [CTATATTGGCTGCTGATGGTGCTGAATACAATCTCAAGCCTGCAGAGAATGCGCCATCACGAGATACCATTGTTCTAATCTTGAGGCTGTTCAGAATGAAGGCAGTTGAGAAGAGTAAAGGAAGAAGGAAGGGCATATTCTTCAAGTAGATTGTTGCTGCTGGCAGTTTGTAATTGGATTCCATGGTGTTTGTTGTTTCTTGTATGTATGTAGAGGGAGCTCGAATTTGAGAGTTGAGTCCNCTGTTGTAAAGGATTCGTCGTCATTCGTTCAATTCATAGGCTCAAATTTTGTTGTAAAGCAAGCTGAAGGANCGATGTTGCAAACAAAATACTCGTGCATTTTGGCATGGCTAAGTNCAGTTGAAAAAANAAACNAAAANAANAGGGGCGGCCNCCACCCCCGGTGGGGCTCCCCTTT]

[+] EMBL OSC19331             [CTATATTGGCTGCTGATGGTGCTGAATACAATCTCAAGCCTGCAGAGAATGCGCCATCACGAGATACCATTGTTCTAATCTTGAGGCTGTTCAGAATGAAGGCAGTTGAGAAGAGTAAAGGAAGAAGGAAGGGCATATTCTTCAAGTAGATTGTTGCTGCTGGCAGTTTGTAATTGGATTCCATGGTGTTTGTTGTTTCTTGTATGTATGTAGAGGGAGCTCGAATTTGAGAGTTGAGTCCNCTGTTGTAAAGGATTCGTCGTCATTCGTTCAATTCATAGGCTCAAATTTTGTTGTAAAGCAAGCTGAAGGANCGATGTTGCAAACAAAATACTCGTGCATTTTGGCATGGCTAAGTNCAGTTGAAAAAANAAACNAAAANAANAGGGGCGGCCNCCACCCCCGGTGGGGCTCCCCTTT]




>consensus_2097#1
CTATATTGGCTGCTGATGGTGCTGAATACAATCTCAAGCCTGCAGAGAATGCGCCATCAC
GAGATACCATTGTTCTAATCTTGAGGCTGTTCAGAATGAAGGCAGTTGAGAAGAGTAAAG
GAAGAAGGAAGGGCATATTCTTCAAGTAGATTGTTGCTGCTGGCAGTTTGTAATTGGATT
CCATGGTGTTTGTTGTTTCTTGTATGTATGTAGAGGGAGCTCGAATTTGAGAGTTGAGTC
CNCTGTTGTAAAGGATTCGTCGTCATTCGTTCAATTCATAGGCTCAAATTTTGTTGTAAA
GCAAGCTGAAGGANCGATGTTGCAAACAAAATACTCGTGCATTTTGGCATGGCTAAGTNC
AGTTGAAAAAANAAACNAAAANAANAGGGGCGGCCNCCACCCCCGGTGGGGCTCCCCTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2097#0      CCATATGGGGCGTGCCTATCTGGAATGTGTGTGCTGATGATTGGGCTGTGCTGGATG--G 58
consensus_2097#1      ---------------------------------------------CTATATTGGCTGCTG 15
                                                                   ** *  *** **  *

consensus_2097#0      GTGGC-TGGAATACAATGCTGCAAAGCCTGGCAGGAGAATGCGCCTATGCATCGGANGAT 117
consensus_2097#1      ATGGTGCTGAATACAATCTC---AAGCCTGC--AGAGAATGCGCC-----ATCACGAGAT 65
                       ***    *********      *******    ***********     ***    ***

consensus_2097#0      GACCCATTGTGTGCTGAATGCTTGGAGGGCTGGTGTGCAAGAATGGAAGGCAAGTTGAGA 177
consensus_2097#1      A--CCATTGT---TCTAAT-CTTG--AGGCTGTTC----AGAATG-AAGGCA-GTTGAGA 111
                         *******      *** ****   ***** *     ****** ****** *******

consensus_2097#0      AGAGTAAAGGAAGAAGGAAGGGCATATTGCTTCAAGTAGATTGGTTGGCTGCTGGCAGTT 237
consensus_2097#1      AGAGTAAAGGAAGAAGGAAGGGCATATT-CTTCAAGTAGATTG--TTGCTGCTGGCAGTT 168
                      **************************** **************  * *************

consensus_2097#0      TGTNATTGGATTGCCATGGTGTTTGTTGGTTTCTGTGTATGGTATGTAGAGGGAGCTCGA 297
consensus_2097#1      TGTAATTGGATT-CCATGGTGTTTGTTGTTTCTTGTAT---GTATGTAGAGGGAGCTCGA 224
                      *** ******** *************** **  *** *   *******************

consensus_2097#0      ATTTGAGAGTTGAGTCCGCTGTTGTAAAGGATTCGTCGTCATTCGTTCA-TTCATAGGCT 356
consensus_2097#1      ATTTGAGAGTTGAGTCCNCTGTTGTAAAGGATTCGTCGTCATTCGTTCAATTCATAGGCT 284
                      ***************** ******************************* **********

consensus_2097#0      CCA-TTTTGTTGTAAAGCAAGCTGAAGGAACGATGTTCCAA-CAAAATACTCGTGCCAAA 414
consensus_2097#1      CAAATTTTGTTGTAAAGCAAGCTGAAGGANCGATGTTGCAAACAAAATACTCGTGCATTT 344
                      * * ************************* ******* *** **************    

consensus_2097#0      AAAAAA------------------------------------------------------ 420
consensus_2097#1      TGGCATGGCTAAGTNCAGTTGAAAAAANAAACNAAAANAANAGGGGCGGCCNCCACCCCC 404
                          *                                                       

consensus_2097#0      ----------------
consensus_2097#1      GGTGGGGCTCCCCTTT 420