cluster # 2118

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Oryza sativa
cluster # 2118 cluster # 2118 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2118#0 length = 499 sequences # 1

consensus_2118#1 length = 232 sequences # 1

consensusID : consensus_2118#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 499
fasta sequence

                              [TTGGGGTTCACCGAGGTCCGTCGGCAGCGCGCTCTAACACGTGGTTCCGCACCTGGCAATGCTCTTCCCGGGCCGCACCTCTTCGCCGGCGCCAGCCATCACCGTGCTCTGGGCCAGCCGCGGCGGCGCTGTCCCGGCGATGCAGAAGGGGAACGAGACGGCGCGGAGCCTGCACATCGCGCTCAACGCCTATCAACGTGCCTGCCTCTTGCAATGCTGGCAGATGCCCCACCGGCCTCGAGATCGTCGGCAAGGTGCTNTCGAGTTCACCACATGGGCCAATGGAACAAAACAAACACAACACAACTACAAATGCAGTGGCTGCAAATGTGCCATTGCTGCCTGCTTGAATTAAGGGTGTTGTCTTTTTGGACTGCCCATNAGCCGATGCTTGGCGTGGTGGTTGCAAGCTGGCTTGCAACCTTCCACAGTGTTCATTGGTTCGTCCCTGTTCAAAAAATATAGTGAATGAATGACATGAAAGAATTCAGATGTGCAA]

[+] EMBL BQ907450             [TTGGGGTTCACCGAGGTCCGTCGGCAGCGCGCTCTAACACGTGGTTCCGCACCTGGCAATGCTCTTCCCGGGCCGCACCTCTTCGCCGGCGCCAGCCATCACCGTGCTCTGGGCCAGCCGCGGCGGCGCTGTCCCGGCGATGCAGAAGGGGAACGAGACGGCGCGGAGCCTGCACATCGCGCTCAACGCCTATCAACGTGCCTGCCTCTTGCAATGCTGGCAGATGCCCCACCGGCCTCGAGATCGTCGGCAAGGTGCTNTCGAGTTCACCACATGGGCCAATGGAACAAAACAAACACAACACAACTACAAATGCAGTGGCTGCAAATGTGCCATTGCTGCCTGCTTGAATTAAGGGTGTTGTCTTTTTGGACTGCCCATNAGCCGATGCTTGGCGTGGTGGTTGCAAGCTGGCTTGCAACCTTCCACAGTGTTCATTGGTTCGTCCCTGTTCAAAAAATATAGTGAATGAATGACATGAAAGAATTCAGATGTGCAA]




>consensus_2118#0
TTGGGGTTCACCGAGGTCCGTCGGCAGCGCGCTCTAACACGTGGTTCCGCACCTGGCAAT
GCTCTTCCCGGGCCGCACCTCTTCGCCGGCGCCAGCCATCACCGTGCTCTGGGCCAGCCG
CGGCGGCGCTGTCCCGGCGATGCAGAAGGGGAACGAGACGGCGCGGAGCCTGCACATCGC
GCTCAACGCCTATCAACGTGCCTGCCTCTTGCAATGCTGGCAGATGCCCCACCGGCCTCG
AGATCGTCGGCAAGGTGCTNTCGAGTTCACCACATGGGCCAATGGAACAAAACAAACACA
ACACAACTACAAATGCAGTGGCTGCAAATGTGCCATTGCTGCCTGCTTGAATTAAGGGTG
TTGTCTTTTTGGACTGCCCATNAGCCGATGCTTGGCGTGGTGGTTGCAAGCTGGCTTGCA
ACCTTCCACAGTGTTCATTGGTTCGTCCCTGTTCAAAAAATATAGTGAATGAATGACATG
AAAGAATTCAGATGTGCAA

consensusID : consensus_2118#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 232
fasta sequence

                              [TTCGAGTTCACCACATGGCCATGAACAAACAACACAACACAACACAATGCAGTGCTGCAATTCCATTCTCCTCTTAATTAGGTTTTCTTTTGACTCCATAGCCGATCTTGCGTGTGTTCACTGCTTCACCTTCCACAGTGTTCATTGGTTCGTCCCCTGTTCAAAAAATATAGTGAATGAATGACATGAAAGAATTCAGATGTGCAAACGGTTTGAATTCTTAAAAAAAAAA]

[+] EMBL BQ908554             [TTCGAGTTCACCACATGGCCATGAACAAACAACACAACACAACACAATGCAGTGCTGCAATTCCATTCTCCTCTTAATTAGGTTTTCTTTTGACTCCATAGCCGATCTTGCGTGTGTTCACTGCTTCACCTTCCACAGTGTTCATTGGTTCGTCCCCTGTTCAAAAAATATAGTGAATGAATGACATGAAAGAATTCAGATGTGCAAACGGTTTGAATTCTTAAAAAAAAAA]




>consensus_2118#1
TTCGAGTTCACCACATGGCCATGAACAAACAACACAACACAACACAATGCAGTGCTGCAA
TTCCATTCTCCTCTTAATTAGGTTTTCTTTTGACTCCATAGCCGATCTTGCGTGTGTTCA
CTGCTTCACCTTCCACAGTGTTCATTGGTTCGTCCCCTGTTCAAAAAATATAGTGAATGA
ATGACATGAAAGAATTCAGATGTGCAAACGGTTTGAATTCTTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2118#0      TTGGGGTTCACCGAGGTCCGTCGGCAGCGCGCTCTAACACGTGGTTCCGCACCTGGCAAT 60
consensus_2118#1      ------------------------------------------------------------
                                                                                  

consensus_2118#0      GCTCTTCCCGGGCCGCACCTCTTCGCCGGCGCCAGCCATCACCGTGCTCTGGGCCAGCCG 120
consensus_2118#1      ------------------------------------------------------------
                                                                                  

consensus_2118#0      CGGCGGCGCTGTCCCGGCGATGCAGAAGGGGAACGAGACGGCGCGGAGCCTGCACATCGC 180
consensus_2118#1      ------------------------------------------------------------
                                                                                  

consensus_2118#0      GCTCAACGCCTATCAACGTGCCTGCCTCTTGCAATGCTGGCAGATGCCCCACCGGCCTCG 240
consensus_2118#1      ------------------------------------------------------------
                                                                                  

consensus_2118#0      AGATCGTCGGCAAGGTGCTNTCGAGTTCACCACATGGGCCAATGGAACAAAACAAACACA 300
consensus_2118#1      -------------------TTCGAGTTCACCACATGG--CCATG-AACAAA--CAACACA 36
                                          *****************  * *** ******   ******

consensus_2118#0      ACACAACTACAAATGCAGTGGCTGCAAATGTGCCATTGCTGCCTGCTTGAATTAAGGGTG 360
consensus_2118#1      ACACAAC-ACAA-TGCAGTG-CTGCAA---TTCCATT----CTCCTCTTAATTAGG---- 82
                      ******* **** ******* ******   * *****    *     * ***** *    

consensus_2118#0      TTGTCTTTTTGGACTGCCCATNAGCCGATGCTTGGCGTGGTGGTTGCAAGCTGGCTTGCA 420
consensus_2118#1      TTTTCTTTT--GACT--CCATA-GCCGATCTTGCGTGTGTTCACTGCT----------TC 127
                      ** ******  ****  ****  ******  *  * *** *   ***             

consensus_2118#0      ACCTTCCACAGTGTTCATTGGTTCGTCCC-TGTTCAAAAAATATAGTGAATGAATGACAT 479
consensus_2118#1      ACCTTCCACAGTGTTCATTGGTTCGTCCCCTGTTCAAAAAATATAGTGAATGAATGACAT 187
                      ***************************** ******************************

consensus_2118#0      GAAAGAATTCAGATGTGCAA------------------------- 499
consensus_2118#1      GAAAGAATTCAGATGTGCAAACGGTTTGAATTCTTAAAAAAAAAA 232
                      ********************