cluster # 2170

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Oryza sativa
cluster # 2170 cluster # 2170 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2170#0 length = 775 sequences # 1

consensus_2170#1 length = 439 sequences # 1

consensusID : consensus_2170#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 775
fasta sequence

                              [GGAGTAGCCCCAGTATCTATTTCTCGAATCTGGTAGCTCTTTTTTATACTTCGCGGCGAGAACCTATGACCTTGCACGCACAGGACCGCTCAGCGCTCATCACGTCAGACCTCCATGATTACAGCTTCCCAAAATCACCTACAGCGCTTAAGCCTATAGGAGTACTTTGTATGCTATACTATATCCTCCTCTCTTTTCTTAGAAAGGGAGGACGCCTGCTAATTTTGTATACATTCTATTAGGGCCTACATTCTATGCCATTTTTTGAAGAACTGCTGTACATTCTGCATCTTCATTCTGTACTCCTTTACTAACGTTCTATTAGGATCTTTGAATCTTTGGATTCATGTCACTAAATGCCGTCATCATCGTCGAGGTAATCCACACTTGCATTGCTTGAATGCCGTTTAAGTCCCTCGAAGATCTCATCAAGCGACCCTGAACTAGACGATTGTGTTGATGACAGGCTCAAAGGAAGAAACTTCTTGGAACTCATGTTTGCTTTGAAGTTCTGAAATCCCGTCTTCATTAAGGTCCATCTCGATGCGATTCCAGCTGATGAATCTGGTTCTTTACTGACAGAAGAGGGTGTCTCTGAGTTTCCAGTTTCAGGCACAACAGAGGTCGATTGGGTTTCTGTCTGGGCTTGCTTAACTGCTTGATGGCTGCTGTTTTGTTCTCTTATAGAAGAATATTTAAGAGCAACGTTACTAGCATATTTCGACTGGAGTCTTCCTTCCTTTTTGGATGGAAGTGTTGTTGCTTTCATCCCTGC]

[+] EMBL CB677653             [GGAGTAGCCCCAGTATCTATTTCTCGAATCTGGTAGCTCTTTTTTATACTTCGCGGCGAGAACCTATGACCTTGCACGCACAGGACCGCTCAGCGCTCATCACGTCAGACCTCCATGATTACAGCTTCCCAAAATCACCTACAGCGCTTAAGCCTATAGGAGTACTTTGTATGCTATACTATATCCTCCTCTCTTTTCTTAGAAAGGGAGGACGCCTGCTAATTTTGTATACATTCTATTAGGGCCTACATTCTATGCCATTTTTTGAAGAACTGCTGTACATTCTGCATCTTCATTCTGTACTCCTTTACTAACGTTCTATTAGGATCTTTGAATCTTTGGATTCATGTCACTAAATGCCGTCATCATCGTCGAGGTAATCCACACTTGCATTGCTTGAATGCCGTTTAAGTCCCTCGAAGATCTCATCAAGCGACCCTGAACTAGACGATTGTGTTGATGACAGGCTCAAAGGAAGAAACTTCTTGGAACTCATGTTTGCTTTGAAGTTCTGAAATCCCGTCTTCATTAAGGTCCATCTCGATGCGATTCCAGCTGATGAATCTGGTTCTTTACTGACAGAAGAGGGTGTCTCTGAGTTTCCAGTTTCAGGCACAACAGAGGTCGATTGGGTTTCTGTCTGGGCTTGCTTAACTGCTTGATGGCTGCTGTTTTGTTCTCTTATAGAAGAATATTTAAGAGCAACGTTACTAGCATATTTCGACTGGAGTCTTCCTTCCTTTTTGGATGGAAGTGTTGTTGCTTTCATCCCTGC]




>consensus_2170#0
GGAGTAGCCCCAGTATCTATTTCTCGAATCTGGTAGCTCTTTTTTATACTTCGCGGCGAG
AACCTATGACCTTGCACGCACAGGACCGCTCAGCGCTCATCACGTCAGACCTCCATGATT
ACAGCTTCCCAAAATCACCTACAGCGCTTAAGCCTATAGGAGTACTTTGTATGCTATACT
ATATCCTCCTCTCTTTTCTTAGAAAGGGAGGACGCCTGCTAATTTTGTATACATTCTATT
AGGGCCTACATTCTATGCCATTTTTTGAAGAACTGCTGTACATTCTGCATCTTCATTCTG
TACTCCTTTACTAACGTTCTATTAGGATCTTTGAATCTTTGGATTCATGTCACTAAATGC
CGTCATCATCGTCGAGGTAATCCACACTTGCATTGCTTGAATGCCGTTTAAGTCCCTCGA
AGATCTCATCAAGCGACCCTGAACTAGACGATTGTGTTGATGACAGGCTCAAAGGAAGAA
ACTTCTTGGAACTCATGTTTGCTTTGAAGTTCTGAAATCCCGTCTTCATTAAGGTCCATC
TCGATGCGATTCCAGCTGATGAATCTGGTTCTTTACTGACAGAAGAGGGTGTCTCTGAGT
TTCCAGTTTCAGGCACAACAGAGGTCGATTGGGTTTCTGTCTGGGCTTGCTTAACTGCTT
GATGGCTGCTGTTTTGTTCTCTTATAGAAGAATATTTAAGAGCAACGTTACTAGCATATT
TCGACTGGAGTCTTCCTTCCTTTTTGGATGGAAGTGTTGTTGCTTTCATCCCTGC

consensusID : consensus_2170#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence

                              [CGTACAGAATATGAACGGAGTAGCCCCCGTTTCTATTTCTCGAATCTGGTAGCTCTTTTTTATACTTCGCGGCGAGAACCTATGACCTTGCACGCACAGGACCGTCAGCGCTCATCACGTCAGACCTCCAGTGATTACAGCTTCCCAAAATCACCTACAGCGCTTAAGCCTATAGGAGTACTTTGTATGCTATACTATATCCTCCTCTCTTTTCTTAGAAAGGGAGGACGCCTGCTAATTTGGTATCACCATTCTATTAGGGCCTACATTCTATGCCATTTTTTGCAAGACACTGTGTCACCATTCTGCGATCTTCATTCTTGTACTCCTTTACTAACGTTCTCATTAGGCATCTTTGAATCTTGGGATTCATGTCCACTAACACGCTGTCCATCCATCGTCGAGGGTACATCCCACGGCTTGGAATTCGGCTTGGCAC]

[-] EMBL BI808903             [CGTACAGAATATGAACGGAGTAGCCCCCGTTTCTATTTCTCGAATCTGGTAGCTCTTTTTTATACTTCGCGGCGAGAACCTATGACCTTGCACGCACAGGACCGTCAGCGCTCATCACGTCAGACCTCCAGTGATTACAGCTTCCCAAAATCACCTACAGCGCTTAAGCCTATAGGAGTACTTTGTATGCTATACTATATCCTCCTCTCTTTTCTTAGAAAGGGAGGACGCCTGCTAATTTGGTATCACCATTCTATTAGGGCCTACATTCTATGCCATTTTTTGCAAGACACTGTGTCACCATTCTGCGATCTTCATTCTTGTACTCCTTTACTAACGTTCTCATTAGGCATCTTTGAATCTTGGGATTCATGTCCACTAACACGCTGTCCATCCATCGTCGAGGGTACATCCCACGGCTTGGAATTCGGCTTGGCAC]




>consensus_2170#1
CGTACAGAATATGAACGGAGTAGCCCCCGTTTCTATTTCTCGAATCTGGTAGCTCTTTTT
TATACTTCGCGGCGAGAACCTATGACCTTGCACGCACAGGACCGTCAGCGCTCATCACGT
CAGACCTCCAGTGATTACAGCTTCCCAAAATCACCTACAGCGCTTAAGCCTATAGGAGTA
CTTTGTATGCTATACTATATCCTCCTCTCTTTTCTTAGAAAGGGAGGACGCCTGCTAATT
TGGTATCACCATTCTATTAGGGCCTACATTCTATGCCATTTTTTGCAAGACACTGTGTCA
CCATTCTGCGATCTTCATTCTTGTACTCCTTTACTAACGTTCTCATTAGGCATCTTTGAA
TCTTGGGATTCATGTCCACTAACACGCTGTCCATCCATCGTCGAGGGTACATCCCACGGC
TTGGAATTCGGCTTGGCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2170#0      ----------------GGAGTAGCCCCAGTATCTATTTCTCGAATCTGGTAGCTCTTTTT 44
consensus_2170#1      CGTACAGAATATGAACGGAGTAGCCCCCGTTTCTATTTCTCGAATCTGGTAGCTCTTTTT 60
                                      *********** ** *****************************

consensus_2170#0      TATACTTCGCGGCGAGAACCTATGACCTTGCACGCACAGGACCGCTCAGCGCTCATCACG 104
consensus_2170#1      TATACTTCGCGGCGAGAACCTATGACCTTGCACGCACAGGACCG-TCAGCGCTCATCACG 119
                      ******************************************** ***************

consensus_2170#0      TCAGACCTCCA-TGATTACAGCTTCCCAAAATCACCTACAGCGCTTAAGCCTATAGGAGT 163
consensus_2170#1      TCAGACCTCCAGTGATTACAGCTTCCCAAAATCACCTACAGCGCTTAAGCCTATAGGAGT 179
                      *********** ************************************************

consensus_2170#0      ACTTTGTATGCTATACTATATCCTCCTCTCTTTTCTTAGAAAGGGAGGACGCCTGCTAAT 223
consensus_2170#1      ACTTTGTATGCTATACTATATCCTCCTCTCTTTTCTTAGAAAGGGAGGACGCCTGCTAAT 239
                      ************************************************************

consensus_2170#0      TTTGTATA--CATTCTATTAGGGCCTACATTCTATGCCATTTTTTG-AAGA-ACTGCTGT 279
consensus_2170#1      TTGGTATCACCATTCTATTAGGGCCTACATTCTATGCCATTTTTTGCAAGACACTGTGTC 299
                      ** ****   ************************************ **** ****    

consensus_2170#0      AC-ATTCTGC-ATCTTCATTCT-GTACTCCTTTACTAACGTTCT-ATTAGG-ATCTTTGA 334
consensus_2170#1      ACCATTCTGCGATCTTCATTCTTGTACTCCTTTACTAACGTTCTCATTAGGCATCTTTGA 359
                      ** ******* *********** ********************* ****** ********

consensus_2170#0      ATCTTTGGATTCATGTC-ACTAA-ATGCCGTCA--TCATCGTCGAGGTAATCCACACTTG 390
consensus_2170#1      ATCTTGGGATTCATGTCCACTAACACGCTGTCCATCCATCGTCGAGG--GTACATCC--- 414
                      ***** *********** ***** * ** ***    ***********   * **  *   

consensus_2170#0      CATTGCTTGAATGCCGTTTAAGTCCCTCGAAGATCTCATCAAGCGACCCTGAACTAGACG 450
consensus_2170#1      CACGGCTTGGAATTCGGCTTGGCAC----------------------------------- 439
                      **  ***** *   **  *  *  *                                   

consensus_2170#0      ATTGTGTTGATGACAGGCTCAAAGGAAGAAACTTCTTGGAACTCATGTTTGCTTTGAAGT 510
consensus_2170#1      ------------------------------------------------------------
                                                                                  

consensus_2170#0      TCTGAAATCCCGTCTTCATTAAGGTCCATCTCGATGCGATTCCAGCTGATGAATCTGGTT 570
consensus_2170#1      ------------------------------------------------------------
                                                                                  

consensus_2170#0      CTTTACTGACAGAAGAGGGTGTCTCTGAGTTTCCAGTTTCAGGCACAACAGAGGTCGATT 630
consensus_2170#1      ------------------------------------------------------------
                                                                                  

consensus_2170#0      GGGTTTCTGTCTGGGCTTGCTTAACTGCTTGATGGCTGCTGTTTTGTTCTCTTATAGAAG 690
consensus_2170#1      ------------------------------------------------------------
                                                                                  

consensus_2170#0      AATATTTAAGAGCAACGTTACTAGCATATTTCGACTGGAGTCTTCCTTCCTTTTTGGATG 750
consensus_2170#1      ------------------------------------------------------------
                                                                                  

consensus_2170#0      GAAGTGTTGTTGCTTTCATCCCTGC 775
consensus_2170#1      -------------------------