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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2207#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1600 fasta sequence
[TCCGCCCATCTACCTCCCTCCTCCGTCCACCCTAACTACGGCGGGTCGCCGGCCATGCTCGCGTTCGCGGTCATCGTCTCGCCTTCCGCGTGGCCGAGAGCCGTCTCCTCAGCTTTCGCGGCGGCCGTCTTCGCGTTCCTGGACGTCGTCGACGTGCTCCTCTGCTTCGTGTACGGCTTCCTCGACGCCGTCTTCGAGGACAGCCCGGTCAGCTGCTACTGCCACGGGAGCCACAGCGCGGCGGCGCTGGACGACGACGACGAGGTCTCCGACACATTGTACCACCGGCGGAGCGCTCTCCGAGACGCGCTGATGGGGCTCGTCAGAGGCAGGAGCGGCGGCTCGCCGGAGACGGAGACGGAGCGGCGCAAGGGGCGGAGCCCGAGGTGGTCGGACTGCGGCTGCGATTCGTGCCGCGCATGGCAGCGCCACGACGACGGCCGGCTGCACTTCGTCGCCAACCAACCGCCGCCGCCGCCAAACGATGGAGCAGTGACAACGACGCAGCAGAGTGGAGAAGAAGACGCCATCTTCATCCACGGCTTCACCTCGTCATCGTCGTTCTGGGCAACAGTGTTCCGCGAATCATCCATCCTCAACAACTGCAGAATGTTGGCGGTCGATCTCCTCGGCTTCGGCAAGTCTCCCAAGCCGGCAAACTGCATGTACAGACTGAAAGATCACGTCGAGATGATCGAGCGGAGCCTCATCGATCCACTCAACCTGAGCTCCTTCCATCTTGTCAGCCACTCCATGGGCTGCATCATCGCCCTCGCATTGGCTGCCAAGCACCCAGAACGAGTCAGATCAATCACACTGATTGCACCGCCGTACTTCGGAGCATGCGAAGAGAAGGCGAGCCAAGTGGCACTGAAGAGACTGGCGGAGAAGAAGCTGTGGCCGCCATTGCAGTTCGGATCCGCAGTGATGTCATGGTACGAGCACATTGGGAGGACTGTCTGCTTCTTGGTCTGCAAAAATCACCTGCTCTGGGAGCGCCTCTTCAGGCTCATCACAGGAAAGAGGGATGTGGACTTTCTGCTGGGTGATCTGACGAAGCACACGCACCACTCGGCGTGGCACACGATGCACAACGTCATCTGCGGTGGGGCCATGCTGCAGGACAGGAACCTGGAGGCCGTCGAGGCGGCCGGCGTCCCGGTGCAGGTGATCCACGGCGGCGACGATCAGGTGGTTCCGGCGGAGTGCGGCCGCCACCTCAAGGCCAAGCTTCCCGGCGCCGAGCTCCGACTCATGGAAGGCTGCGACCACAAGACGGTGGTTTTCGGCAGGGAGAGGGGATTTGCTGAGGAGCTCAGAGCATTCTGGTCCGCGTCTCATCAGAATAAGCAGCTAGCAGCATCTGCATCAGGGTGGGCAGGTTAACGGATGTTGATTGTTGGTGTGTAGAATAATGTCTGATATGAAATCATGATGTAGCATAGAGAAATTCAGTCCACACTTTGAAATTACTGGTACTACAATTTTTAGAGATTAAAGACTAGGGTGAATCCATCGACACGTTTCTTTCGTCAGAACAGTGTCCGTATATTGGAAAATCCTTTTCTAGCTCGTGGATTGGCAGATTAATCTTTGAATT]
[+] EMBL AK070883 [TCCGCCCATCTACCTCCCTCCTCCGTCCACCCTAACTACGGCGGGTCGCCGGCCATGCTCGCGTTCGCGGTCATCGTCTCGCCTTCCGCGTGGCCGAGAGCCGTCTCCTCAGCTTTCGCGGCGGCCGTCTTCGCGTTCCTGGACGTCGTCGACGTGCTCCTCTGCTTCGTGTACGGCTTCCTCGACGCCGTCTTCGAGGACAGCCCGGTCAGCTGCTACTGCCACGGGAGCCACAGCGCGGCGGCGCTGGACGACGACGACGAGGTCTCCGACACATTGTACCACCGGCGGAGCGCTCTCCGAGACGCGCTGATGGGGCTCGTCAGAGGCAGGAGCGGCGGCTCGCCGGAGACGGAGACGGAGCGGCGCAAGGGGCGGAGCCCGAGGTGGTCGGACTGCGGCTGCGATTCGTGCCGCGCATGGCAGCGCCACGACGACGGCCGGCTGCACTTCGTCGCCAACCAACCGCCGCCGCCGCCAAACGATGGAGCAGTGACAACGACGCAGCAGAGTGGAGAAGAAGACGCCATCTTCATCCACGGCTTCACCTCGTCATCGTCGTTCTGGGCAACAGTGTTCCGCGAATCATCCATCCTCAACAACTGCAGAATGTTGGCGGTCGATCTCCTCGGCTTCGGCAAGTCTCCCAAGCCGGCAAACTGCATGTACAGACTGAAAGATCACGTCGAGATGATCGAGCGGAGCCTCATCGATCCACTCAACCTGAGCTCCTTCCATCTTGTCAGCCACTCCATGGGCTGCATCATCGCCCTCGCATTGGCTGCCAAGCACCCAGAACGAGTCAGATCAATCACACTGATTGCACCGCCGTACTTCGGAGCATGCGAAGAGAAGGCGAGCCAAGTGGCACTGAAGAGACTGGCGGAGAAGAAGCTGTGGCCGCCATTGCAGTTCGGATCCGCAGTGATGTCATGGTACGAGCACATTGGGAGGACTGTCTGCTTCTTGGTCTGCAAAAATCACCTGCTCTGGGAGCGCCTCTTCAGGCTCATCACAGGAAAGAGGGATGTGGACTTTCTGCTGGGTGATCTGACGAAGCACACGCACCACTCGGCGTGGCACACGATGCACAACGTCATCTGCGGTGGGGCCATGCTGCAGGACAGGAACCTGGAGGCCGTCGAGGCGGCCGGCGTCCCGGTGCAGGTGATCCACGGCGGCGACGATCAGGTGGTTCCGGCGGAGTGCGGCCGCCACCTCAAGGCCAAGCTTCCCGGCGCCGAGCTCCGACTCATGGAAGGCTGCGACCACAAGACGGTGGTTTTCGGCAGGGAGAGGGGATTTGCTGAGGAGCTCAGAGCATTCTGGTCCGCGTCTCATCAGAATAAGCAGCTAGCAGCATCTGCATCAGGGTGGGCAGGTTAACGGATGTTGATTGTTGGTGTGTAGAATAATGTCTGATATGAAATCATGATGTAGCATAGAGAAATTCAGTCCACACTTTGAAATTACTGGTACTACAATTTTTAGAGATTAAAGACTAGGGTGAATCCATCGACACGTTTCTTTCGTCAGAACAGTGTCCGTATATTGGAAAATCCTTTTCTAGCTCGTGGATTGGCAGATTAATCTTTGAATT]
consensusID : consensus_2207#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 913 fasta sequence
[CCTCCGTCCACCCTAACTACGGCGGGTCGCCGGCCATGCTCGCGTTCGCGGTCATCGTCTCGCCTTCCGCGTGGCCGAGAGCCGTCTCCTCAGCTTTCGCGGCGGCCGTCTTCGCGTTCCTGGACGTCGTCGACGTGCTCCTCTGCTTCGTGTACGGCTTCCTCGACGCCGTCTTCGAGGACAGCCCGGTCAGCTGCTACTGCCACGGGAGCCACAGCGCGGCGGCGCTGGACGACGACGACGAGGTCTCCGACACATTGTACCACCGGCGGAGCGCTCTCCGAGACGCGCTGATGGGGCTCGTCAGAGGCACGAGCGGCGGCTCGNCGGAGACGGAGACNGAGCGGCGCAAGGGGCGGAGCCCCAGGGGGACNGACTGCGGCTGCGAATCTAGCCCCGCATGGGAAGGGCACGACAAACGGGCCGATTGCTCTTAGACTTCAACCTTATCGGCGACCACCACTATATTTAGGGAGCGTAGCCCACTACGCCTACTCAAATGGTGAATGAGGATGCCATCATTCATCTATGAGTTTACGATAATGTCTTGGGTGCGGAGGTAAAAGGTTCCACGATATAAACATTCTAATTTACTGGTATATTTTAAGCTGCTACTAACTATGTATAATGTGGTGTTCTAATGTCATGTGACCCGTATAACATATTATAGATGCAGGTCGAAATGGTCATTGCATCGTAATTTAGCATTAGGCGATGAGCTGAACAACAAGTCATTTTATATGGATGATGATCTGCTTACGTGTATGATACTGATAAATAGTCCTGAGTATTACATGAATTATGTAGGTGTAGAATAGTATATATGTATATGCAGCTGGACGTATATTAGTATCTCATCGGTGATCTATGATATGGATTGTATGGTGTCGTGCAAGTGTATTGATGTAATCTA]
[+] EMBL AW154993 [CCTCCGTCCACCCTAACTACGGCGGGTCGCCGGCCATGCTCGCGTTCGCGGTCATCGTCTCGCCTTCCGCGTGGCCGAGAGCCGTCTCCTCAGCTTTCGCGGCGGCCGTCTTCGCGTTCCTGGACGTCGTCGACGTGCTCCTCTGCTTCGTGTACGGCTTCCTCGACGCCGTCTTCGAGGACAGCCCGGTCAGCTGCTACTGCCACGGGAGCCACAGCGCGGCGGCGCTGGACGACGACGACGAGGTCTCCGACACATTGTACCACCGGCGGAGCGCTCTCCGAGACGCGCTGATGGGGCTCGTCAGAGGCACGAGCGGCGGCTCGNCGGAGACGGAGACNGAGCGGCGCAAGGGGCGGAGCCCCAGGGGGACNGACTGCGGCTGCGAATCTAGCCCCGCATGGGAAGGGCACGACAAACGGGCCGATTGCTCTTAGACTTCAACCTTATCGGCGACCACCACTATATTTAGGGAGCGTAGCCCACTACGCCTACTCAAATGGTGAATGAGGATGCCATCATTCATCTATGAGTTTACGATAATGTCTTGGGTGCGGAGGTAAAAGGTTCCACGATATAAACATTCTAATTTACTGGTATATTTTAAGCTGCTACTAACTATGTATAATGTGGTGTTCTAATGTCATGTGACCCGTATAACATATTATAGATGCAGGTCGAAATGGTCATTGCATCGTAATTTAGCATTAGGCGATGAGCTGAACAACAAGTCATTTTATATGGATGATGATCTGCTTACGTGTATGATACTGATAAATAGTCCTGAGTATTACATGAATTATGTAGGTGTAGAATAGTATATATGTATATGCAGCTGGACGTATATTAGTATCTCATCGGTGATCTATGATATGGATTGTATGGTGTCGTGCAAGTGTATTGATGTAATCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2207#0 TCCGCCCATCTACCTCCCTCCTCCGTCCACCCTAACTACGGCGGGTCGCCGGCCATGCTC 60
consensus_2207#1 -------------------CCTCCGTCCACCCTAACTACGGCGGGTCGCCGGCCATGCTC 41
*****************************************
consensus_2207#0 GCGTTCGCGGTCATCGTCTCGCCTTCCGCGTGGCCGAGAGCCGTCTCCTCAGCTTTCGCG 120
consensus_2207#1 GCGTTCGCGGTCATCGTCTCGCCTTCCGCGTGGCCGAGAGCCGTCTCCTCAGCTTTCGCG 101
************************************************************
consensus_2207#0 GCGGCCGTCTTCGCGTTCCTGGACGTCGTCGACGTGCTCCTCTGCTTCGTGTACGGCTTC 180
consensus_2207#1 GCGGCCGTCTTCGCGTTCCTGGACGTCGTCGACGTGCTCCTCTGCTTCGTGTACGGCTTC 161
************************************************************
consensus_2207#0 CTCGACGCCGTCTTCGAGGACAGCCCGGTCAGCTGCTACTGCCACGGGAGCCACAGCGCG 240
consensus_2207#1 CTCGACGCCGTCTTCGAGGACAGCCCGGTCAGCTGCTACTGCCACGGGAGCCACAGCGCG 221
************************************************************
consensus_2207#0 GCGGCGCTGGACGACGACGACGAGGTCTCCGACACATTGTACCACCGGCGGAGCGCTCTC 300
consensus_2207#1 GCGGCGCTGGACGACGACGACGAGGTCTCCGACACATTGTACCACCGGCGGAGCGCTCTC 281
************************************************************
consensus_2207#0 CGAGACGCGCTGATGGGGCTCGTCAGAGGCAGGAGCGGCGGCTCGCCGGAGACGGAGACG 360
consensus_2207#1 CGAGACGCGCTGATGGGGCTCGTCAGAGGCACGAGCGGCGGCTCGNCGGAGACGGAGACN 341
******************************* ************* *************
consensus_2207#0 GAGCGGCGCAAGGGGCGGAGCCCGAGGTGGTCGGACTGCGGCTGCGATTCGTGCCGCGCA 420
consensus_2207#1 GAGCGGCGCAAGGGGCGGAGCCCCAGGGGGACNGACTGCGGCTGCGAATCTAGCCCCGCA 401
*********************** *** ** * ************** ** *** ****
consensus_2207#0 TGGCAGCGCCACGACGAC--GGCCGGCTGCACTTCGTCGCCAACC--AACCGCCGCCGCC 476
consensus_2207#1 TGGGAAGGGCACGACAAACGGGCCGATTGCTCTTAGACTTCAACCTTATCGGCGACCACC 461
*** * * ****** * ***** *** *** * * ***** * * ** ** **
consensus_2207#0 GCCAAACG-ATGGAGCAGTGACAACGACGC--AGCAGAGTGGAGAA-GAAGACGCCATC- 531
consensus_2207#1 ACTATATTTAGGGAGCGTAGCCCACTACGCCTACTCAAATGGTGAATGAGGATGCCATCA 521
* * * * ***** * * ** **** * * *** *** ** ** ******
consensus_2207#0 TTCATCCACGGCTTCACCTCGTCATCGTCGTTCTGGGCA-ACAGTGTTCCGCGAATCATC 590
consensus_2207#1 TTCATCTATGAGTTTACGATAATGTCTTGGGTGCGGAGGTAAAAGGTTCCACGATATAAA 581
****** * * ** ** ** * * * ** * * ***** *** *
consensus_2207#0 CATCCTCAACAACTGCAGAATGTTGGCGGTCGATCTCCTCGGCTTCGGCAAGTCTCCCAA 650
consensus_2207#1 CATTCTAATTTACTGGTATATTTTAAGCTGCTACTAACTATGTATAATGTGGTGTTCTAA 641
*** ** * **** ** ** * * ** * * ** * * **
consensus_2207#0 -GCCG-GCAAACTGCATGTACAGACTGAAAGATCACGTCGAGATGATCGAGCGGAGCCTC 708
consensus_2207#1 TGTCATGTGACCCGTATA-ACATATTATAGATGCAGGTCGAAATGGTC-ATTGCATCGTA 699
* * * * * * ** *** * * * ** ***** *** ** * * * * *
consensus_2207#0 ATCGATCCACTCAACCTGAGCTCCTTCCATCTTGTCAGCCACTCCATGGGCTGCATCATC 768
consensus_2207#1 ATTTAGCATTAGGCGATGAGCT------GAACAACAAGTCATTTTATA---TGGATGATG 750
** * * ****** ** ** * ** ** ** **
consensus_2207#0 GCCCTCGCATTGGCTGCCAAGCACCCAGAACGAGTCAGATCAATCACACTGATTGCACCG 828
consensus_2207#1 ATCTGC---TTACGTGTATGATACTGATAAATAGTCCTGAGTATTACATGAATTATGTAG 807
* * ** ** ** * ** **** ** *** *** *
consensus_2207#0 CCGTACTTCGGAGCATGCGAAGAGAAGGCGAGCCAAGTGGCACTGAAGAGACTGGCGGAG 888
consensus_2207#1 GTGTAGAATAGTATATATGTATATGCAGCTGGACGTATATTAGT-ATCTCATCGGTGATC 866
*** * ** * * * ** * * * * * * * ** *
consensus_2207#0 AAGAAGCTGTGGCCGCCATTGCAGTTCGGATCCGCAGTGATGTCATGGTACGAGCACATT 948
consensus_2207#1 TATGA--TATGGATTGTATGGTGTCGTGCAAGTGTATTGATGTAATC-TA---------- 913
* * * *** ** * * * * * ****** ** **
consensus_2207#0 GGGAGGACTGTCTGCTTCTTGGTCTGCAAAAATCACCTGCTCTGGGAGCGCCTCTTCAGG 1008
consensus_2207#1 ------------------------------------------------------------
consensus_2207#0 CTCATCACAGGAAAGAGGGATGTGGACTTTCTGCTGGGTGATCTGACGAAGCACACGCAC 1068
consensus_2207#1 ------------------------------------------------------------
consensus_2207#0 CACTCGGCGTGGCACACGATGCACAACGTCATCTGCGGTGGGGCCATGCTGCAGGACAGG 1128
consensus_2207#1 ------------------------------------------------------------
consensus_2207#0 AACCTGGAGGCCGTCGAGGCGGCCGGCGTCCCGGTGCAGGTGATCCACGGCGGCGACGAT 1188
consensus_2207#1 ------------------------------------------------------------
consensus_2207#0 CAGGTGGTTCCGGCGGAGTGCGGCCGCCACCTCAAGGCCAAGCTTCCCGGCGCCGAGCTC 1248
consensus_2207#1 ------------------------------------------------------------
consensus_2207#0 CGACTCATGGAAGGCTGCGACCACAAGACGGTGGTTTTCGGCAGGGAGAGGGGATTTGCT 1308
consensus_2207#1 ------------------------------------------------------------
consensus_2207#0 GAGGAGCTCAGAGCATTCTGGTCCGCGTCTCATCAGAATAAGCAGCTAGCAGCATCTGCA 1368
consensus_2207#1 ------------------------------------------------------------
consensus_2207#0 TCAGGGTGGGCAGGTTAACGGATGTTGATTGTTGGTGTGTAGAATAATGTCTGATATGAA 1428
consensus_2207#1 ------------------------------------------------------------
consensus_2207#0 ATCATGATGTAGCATAGAGAAATTCAGTCCACACTTTGAAATTACTGGTACTACAATTTT 1488
consensus_2207#1 ------------------------------------------------------------
consensus_2207#0 TAGAGATTAAAGACTAGGGTGAATCCATCGACACGTTTCTTTCGTCAGAACAGTGTCCGT 1548
consensus_2207#1 ------------------------------------------------------------
consensus_2207#0 ATATTGGAAAATCCTTTTCTAGCTCGTGGATTGGCAGATTAATCTTTGAATT 1600
consensus_2207#1 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||