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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_221#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1932 fasta sequence
[CAAAAATCGAAAGAAAAGCGAAATTAAATATGGCACACGAGGGTGACAGCCGTGCACTGTCCAGGCGCGTACACGTCGCTCGCGTACGTACTTTGTGTGCAGTAGCAGTTGGTACTCCTGCACAGTGTACGCGCGCGCGACATCTGTACACTACGTACACGTTTACGTATACGTGTATATGCTTGTCGTCCACGTAGGCAACCTCCGCTACTCGGTCTCTAAGAGCTTACAATAGCAGTCTATAAACCAGCTATAAACATATTTTAAAGAGATAAAAAGAAGAGAGAAAAGCAGCGGGCTATAAATCTGTAGCCAGCTGTAACACGGACTCCAAGACGTAATATGTGTATGACATGTGAGATCAGGCATTAATAGTATTGTAAGCAACTATTGTATGAATTGGCTATTATATTGGCTATAGATGATTTGAAGCTAACAGTTGGCTATACTATTAAACTTGCTCTAACGCAGAGCTGATCACCGATCAGAGTGTAGTACAGCGAAATAAGCGTCGCCAGACTTTACCCTAAATTCAGGACTATATGTTTCTGTTTTCTCGCGCACGCTTAACAAACTGCTAAACAATAATTTTTAAAAAAATTATAAGAAAGTTGTTTTAGGAAAATGTATTAATCCATTTTTCAATTTTTTTATAACTAATAGTTAAGTATGCATTAATCTCTGTTTTATGTGTGAAGGGAGCGGTTCCCCAACTGCTCCAGAAGAAGAACATAGCTTAATTAAATTTCCTACGGTGAAATCAGTCTATACAGATTTAAGTTCTAAAATTGATACAAATATTAATATTTACTACTAATTGTTTTTTCAGTATTAGACAACGAGATGTCTATGGAGACATCATAGTAGTATCCAGCAGCCTATGTGGCGTTGCATTGGGAAGCCTAGCGCGGTGAGTCACCCTCCACCGTGGCATGGCCCCACCTGTCAGTTTGTAACTGCCAACCAAGTCACTGAAAAATTAGATGGACGATTTTGTCTCCGTAAAACAGAGTGAAATTAGGAGGACCACTGGATCCGCTATGCCAGGGATGTACTCATGATCTGGGCCATCCACGTGTCTGATTAAATACTTGACCCTGACATGACATACACGCATACTTAATGCATTAGCTTAATTAGCTAGCAACAATTGGTTTGGGATCATGGCAATGCAAAGCTTCTACTACTAGCTAGCTAGGCATGATCATGCAAGAGGCAGCCTGATGACTCTGATGTATGTTAACAACTGCAAGCAAGAGGGGTTATTTCACTAGTCTTGTCTTCACATGTTAACTGCATGAGTAGCTGCTTAGTTTGGAGAGGCAGTGTCCTAATCCAGCAAAGGGCAGGGCAGGGTCAGACCAGAAATGCTGCCTCATGGTAAGTGGGAACATTAGCTTTCTCACTGGAATATGATGCCATTGCTTGAAACAACTGTGCTCACTGTAGTGTAACAAAATCTTGTTCCTGCTATCTTTGATAATGGTACCCGTGTTTATCGGAAAAATGCTTACTGTACCAGCCTAATGAAGACGAAGTTGAAGAAGAAGATGATGAACAAGAAGAGGAAAAGATCTTTCCAAAGCAGCCAGCAAAAAAAGGATTTATAAAAAAGAAAAGAAAAGAAAAGAAAGGTAGCCAAAGGAGAAAGCAGGGGAGAAGAGAAGAAGATGAGATGAGCTGAGATGCTGCAGCCACATGAGGAATGCTACCTTCTGTCTCCACTTGATCATGGAGGAGACCAAGACCAGCCAACCAAATCACCAATTAGTTAACTGCATTTGCTACTAATTGCTAGTGCTAAACAAAGGTTTGGTTAAACGGTAGCCACCAGTAAACAAATCAGTATGCAAAAGAGGAATGGGGTTTTAATATTACCAAAGTCAGCAGGAGCGAGCCAGTAACATCCTAGCTGGACCAGCTTCCTGGGAA]
[+] EMBL AK064207 [CAAAAATCGAAAGAAAAGCGAAATTAAATATGGCACACGAGGGTGACAGCCGTGCACTGTCCAGGCGCGTACACGTCGCTCGCGTACGTACTTTGTGTGCAGTAGCAGTTGGTACTCCTGCACAGTGTACGCGCGCGCGACATCTGTACACTACGTACACGTTTACGTATACGTGTATATGCTTGTCGTCCACGTAGGCAACCTCCGCTACTCGGTCTCTAAGAGCTTACAATAGCAGTCTATAAACCAGCTATAAACATATTTTAAAGAGATAAAAAGAAGAGAGAAAAGCAGCGGGCTATAAATCTGTAGCCAGCTGTAACACGGACTCCAAGACGTAATATGTGTATGACATGTGAGATCAGGCATTAATAGTATTGTAAGCAACTATTGTATGAATTGGCTATTATATTGGCTATAGATGATTTGAAGCTAACAGTTGGCTATACTATTAAACTTGCTCTAACGCAGAGCTGATCACCGATCAGAGTGTAGTACAGCGAAATAAGCGTCGCCAGACTTTACCCTAAATTCAGGACTATATGTTTCTGTTTTCTCGCGCACGCTTAACAAACTGCTAAACAATAATTTTTAAAAAAATTATAAGAAAGTTGTTTTAGGAAAATGTATTAATCCATTTTTCAATTTTTTTATAACTAATAGTTAAGTATGCATTAATCTCTGTTTTATGTGTGAAGGGAGCGGTTCCCCAACTGCTCCAGAAGAAGAACATAGCTTAATTAAATTTCCTACGGTGAAATCAGTCTATACAGATTTAAGTTCTAAAATTGATACAAATATTAATATTTACTACTAATTGTTTTTTCAGTATTAGACAACGAGATGTCTATGGAGACATCATAGTAGTATCCAGCAGCCTATGTGGCGTTGCATTGGGAAGCCTAGCGCGGTGAGTCACCCTCCACCGTGGCATGGCCCCACCTGTCAGTTTGTAACTGCCAACCAAGTCACTGAAAAATTAGATGGACGATTTTGTCTCCGTAAAACAGAGTGAAATTAGGAGGACCACTGGATCCGCTATGCCAGGGATGTACTCATGATCTGGGCCATCCACGTGTCTGATTAAATACTTGACCCTGACATGACATACACGCATACTTAATGCATTAGCTTAATTAGCTAGCAACAATTGGTTTGGGATCATGGCAATGCAAAGCTTCTACTACTAGCTAGCTAGGCATGATCATGCAAGAGGCAGCCTGATGACTCTGATGTATGTTAACAACTGCAAGCAAGAGGGGTTATTTCACTAGTCTTGTCTTCACATGTTAACTGCATGAGTAGCTGCTTAGTTTGGAGAGGCAGTGTCCTAATCCAGCAAAGGGCAGGGCAGGGTCAGACCAGAAATGCTGCCTCATGGTAAGTGGGAACATTAGCTTTCTCACTGGAATATGATGCCATTGCTTGAAACAACTGTGCTCACTGTAGTGTAACAAAATCTTGTTCCTGCTATCTTTGATAATGGTACCCGTGTTTATCGGAAAAATGCTTACTGTACCAGCCTAATGAAGACGAAGTTGAAGAAGAAGATGATGAACAAGAAGAGGAAAAGATCTTTCCAAAGCAGCCAGCAAAAAAAGGATTTATAAAAAAGAAAAGAAAAGAAAAGAAAGGTAGCCAAAGGAGAAAGCAGGGGAGAAGAGAAGAAGATGAGATGAGCTGAGATGCTGCAGCCACATGAGGAATGCTACCTTCTGTCTCCACTTGATCATGGAGGAGACCAAGACCAGCCAACCAAATCACCAATTAGTTAACTGCATTTGCTACTAATTGCTAGTGCTAAACAAAGGTTTGGTTAAACGGTAGCCACCAGTAAACAAATCAGTATGCAAAAGAGGAATGGGGTTTTAATATTACCAAAGTCAGCAGGAGCGAGCCAGTAACATCCTAGCTGGACCAGCTTCCTGGGAA]
consensusID : consensus_221#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[TGGGAGAAGAGAAGAAGATGAGATGAGCTGAGATGCTGCAGCCACATGATAATGGTACCCGTGTTTATCGGAAAAATGCTTACTGTACCAGCCTAATGAAGAGGAAGTTGAAGAAGAAGATGATGAACAAGAAGAGGAAAAGATCTTTCCAAAGCAGCCAGCAAAAAAAGGATTTATAAAAAAGAAAAGAAAAGAAAAGAAAGGTAGCCAACGGAGAAAGCAGGGGAGAAGAGAAGAAGATGAGATGAGCTGAGATGCTGCAGCCACATGATAATGGTACCCGTGTTTATCGGAAAAATGCTTACTGTACCAGCCTAATGAAGAGGAAGTTGAAGAAGAAGATGATGAACAAGAAGAGGAAAAGATCTTTCCAAAGCAGCCAGCAAAAAAAGGATTTATAAAAAAGAAAAGAAAAGAAAAGAAAGGTAGCCAACGGAGAAAGCAGGGGAGAAGAGAAGAAGATGAGATGAGCTGAGATGCTGCAGCCACATGATAATGGTACCCGTGTTTATCGGAAAAATGCTTACTGTACCAGCCTAATGAAGAGGAAGTTGAAGAAGAAGATGATGAACAAGAAGAGGAAAAGATCTTTCCAAAGCAGCCAGCAAAAAAA]
[+] EMBL CA764133 [TGGGAGAAGAGAAGAAGATGAGATGAGCTGAGATGCTGCAGCCACATGATAATGGTACCCGTGTTTATCGGAAAAATGCTTACTGTACCAGCCTAATGAAGAGGAAGTTGAAGAAGAAGATGATGAACAAGAAGAGGAAAAGATCTTTCCAAAGCAGCCAGCAAAAAAAGGATTTATAAAAAAGAAAAGAAAAGAAAAGAAAGGTAGCCAACGGAGAAAGCAGGGGAGAAGAGAAGAAGATGAGATGAGCTGAGATGCTGCAGCCACATGATAATGGTACCCGTGTTTATCGGAAAAATGCTTACTGTACCAGCCTAATGAAGAGGAAGTTGAAGAAGAAGATGATGAACAAGAAGAGGAAAAGATCTTTCCAAAGCAGCCAGCAAAAAAAGGATTTATAAAAAAGAAAAGAAAAGAAAAGAAAGGTAGCCAACGGAGAAAGCAGGGGAGAAGAGAAGAAGATGAGATGAGCTGAGATGCTGCAGCCACATGATAATGGTACCCGTGTTTATCGGAAAAATGCTTACTGTACCAGCCTAATGAAGAGGAAGTTGAAGAAGAAGATGATGAACAAGAAGAGGAAAAGATCTTTCCAAAGCAGCCAGCAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_221#0 CAAAAATCGAAAGAAAAGCGAAATTAAATATGGCACACGAGGGTGACAGCCGTGCACTGT 60
consensus_221#1 ------------------------------------------------------------
consensus_221#0 CCAGGCGCGTACACGTCGCTCGCGTACGTACTTTGTGTGCAGTAGCAGTTGGTACTCCTG 120
consensus_221#1 ------------------------------------------------------------
consensus_221#0 CACAGTGTACGCGCGCGCGACATCTGTACACTACGTACACGTTTACGTATACGTGTATAT 180
consensus_221#1 ------------------------------------------------------------
consensus_221#0 GCTTGTCGTCCACGTAGGCAACCTCCGCTACTCGGTCTCTAAGAGCTTACAATAGCAGTC 240
consensus_221#1 ------------------------------------------------------------
consensus_221#0 TATAAACCAGCTATAAACATATTTTAAAGAGATAAAAAGAAGAGAGAAAAGCAGCGGGCT 300
consensus_221#1 ------------------------------------------------------------
consensus_221#0 ATAAATCTGTAGCCAGCTGTAACACGGACTCCAAGACGTAATATGTGTATGACATGTGAG 360
consensus_221#1 ------------------------------------------------------------
consensus_221#0 ATCAGGCATTAATAGTATTGTAAGCAACTATTGTATGAATTGGCTATTATATTGGCTATA 420
consensus_221#1 ------------------------------------------------------------
consensus_221#0 GATGATTTGAAGCTAACAGTTGGCTATACTATTAAACTTGCTCTAACGCAGAGCTGATCA 480
consensus_221#1 ------------------------------------------------------------
consensus_221#0 CCGATCAGAGTGTAGTACAGCGAAATAAGCGTCGCCAGACTTTACCCTAAATTCAGGACT 540
consensus_221#1 ------------------------------------------------------------
consensus_221#0 ATATGTTTCTGTTTTCTCGCGCACGCTTAACAAACTGCTAAACAATAATTTTTAAAAAAA 600
consensus_221#1 ------------------------------------------------------------
consensus_221#0 TTATAAGAAAGTTGTTTTAGGAAAATGTATTAATCCATTTTTCAATTTTTTTATAACTAA 660
consensus_221#1 ------------------------------------------------------------
consensus_221#0 TAGTTAAGTATGCATTAATCTCTGTTTTATGTGTGAAGGGAGCGGTTCCCCAACTGCTCC 720
consensus_221#1 ------------------------------------------------------------
consensus_221#0 AGAAGAAGAACATAGCTTAATTAAATTTCCTACGGTGAAATCAGTCTATACAGATTTAAG 780
consensus_221#1 ------------------------------------------------------------
consensus_221#0 TTCTAAAATTGATACAAATATTAATATTTACTACTAATTGTTTTTTCAGTATTAGACAAC 840
consensus_221#1 ------------------------------------------------------------
consensus_221#0 GAGATGTCTATGGAGACATCATAGTAGTATCCAGCAGCCTATGTGGCGTTGCATTGGGAA 900
consensus_221#1 ------------------------------------------------------------
consensus_221#0 GCCTAGCGCGGTGAGTCACCCTCCACCGTGGCATGGCCCCACCTGTCAGTTTGTAACTGC 960
consensus_221#1 ------------------------------------------------------------
consensus_221#0 CAACCAAGTCACTGAAAAATTAGATGGACGATTTTGTCTCCGTAAAACAGAGTGAAATTA 1020
consensus_221#1 ------------------------------------------------------------
consensus_221#0 GGAGGACCACTGGATCCGCTATGCCAGGGATGTACTCATGATCTGGGCCATCCACGTGTC 1080
consensus_221#1 ------------------------------------------------------------
consensus_221#0 TGATTAAATACTTGACCCTGACATGACATACACGCATACTTAATGCATTAGCTTAATTAG 1140
consensus_221#1 ------------------------------------------------------------
consensus_221#0 CTAGCAACAATTGGTTTGGGATCATGGCAATGCAAAGCTTCTACTACTAGCTAGCTAGGC 1200
consensus_221#1 -----------------------------------------TGGGAGAAGAGAAGAAGAT 19
* * ** * **
consensus_221#0 ATGATCATGCAAGAGGC---AGCCTGATGACTCTGATGTATGTTAACAACTGCAAGCAAG 1257
consensus_221#1 GAGATGAGCTGAGATGCTGCAGCCACATGATAATGGTACCCGTGTTTATC-----GGAAA 74
*** * *** ** **** **** ** * ** * * * **
consensus_221#0 AGGGGTTATTTCACTAGTCTTGTCTTCACATGTTAACTGCATGAGTAGCTGCTTAGTTTG 1317
consensus_221#1 AATGCTTACTGTACCAGCCTAA---TGAAGAGGAAGTTGAAGAAGAAGATGATGAACAAG 131
* * *** * ** ** ** * * * * ** * ** ** ** * * *
consensus_221#0 GAGAGGCAGTGTCCTAATCCA-GCAAAGGGCAGGGCAGGGTCAGACCAGAAATGCTGCCT 1376
consensus_221#1 AAGAGGAAAAGATCTTTCCAAAGCAGCCAGCAAAAAAAGGATTTATAAAAAAGA------ 185
***** * * ** * * *** *** * ** * * ***
consensus_221#0 CATGGTAAGTGGGAACATTAGCTTTCTCACTGGAATATGATGCCATTGCTTGAAACAACT 1436
consensus_221#1 ---AAAGAAAAGAAAAGAAAGGTAGCCAACGGAGAAA----------GCAGGGGAGAAGA 232
* * ** ** * * ** * * * ** * * **
consensus_221#0 GTGCTCACTGTAGTGTAACAAAATCTTGTTCCTGCTATCTTTGATAATGGTACCCGTGTT 1496
consensus_221#1 GAAGAAGATGAGATGAGCTGAGATGCTGCAGCCACA-----TGATAATGGTACCCGTGTT 287
* ** ** * ** ** * * *******************
consensus_221#0 TATCGGAAAAATGCTTACTGTACCAGCCTAATGAAGACGAAGTTGAAGAAGAAGATGATG 1556
consensus_221#1 TATCGGAAAAATGCTTACTGTACCAGCCTAATGAAGAGGAAGTTGAAGAAGAAGATGATG 347
************************************* **********************
consensus_221#0 AACAAGAAGAGGAAAAGATCTTTCCAAAGCAGCCAGCAAAAAAAGGATTTATAAAAAAGA 1616
consensus_221#1 AACAAGAAGAGGAAAAGATCTTTCCAAAGCAGCCAGCAAAAAAAGGATTTATAAAAAAGA 407
************************************************************
consensus_221#0 AAAGAAAAGAAAAGAAAGGTAGCCAAAGGAGAAAGCAGGGGAGAAGAGAAGAAGATGAGA 1676
consensus_221#1 AAAGAAAAGAAAAGAAAGGTAGCCAACGGAGAAAGCAGGGGAGAAGAGAAGAAGATGAGA 467
************************** *********************************
consensus_221#0 TGAGCTGAGATGCTGCAGCCACATGAGGAATGCTACCTTCTGTCTCCACTTGATCATGGA 1736
consensus_221#1 TGAGCTGAGATGCTGCAGCCACATGAT-AATGGTACC-----------CGTGTTTATCGG 515
************************** **** **** * ** * ** *
consensus_221#0 GGAGACCAAGACCAGCCAACCAAATCACCAATTAGTTAACTGCATTTGCTACTAATTGCT 1796
consensus_221#1 AAAAAT---GCTTACTGTACCAGCCTAATGAAGAGGAAGTTGAAGAAGAAGATGATGAAC 572
* * * * **** * * ** * ** * * * **
consensus_221#0 AGTGCTAAACAAAGGTTTGGTTAAACGGTAGCCACCAGTAAACAAATCAGTATGCAAAAG 1856
consensus_221#1 AAGAAGAGGAAAAGATCTTTCCAAA--GCAGCCAGCAAAAAAA----------------- 613
* * **** * * *** * ***** ** ***
consensus_221#0 AGGAATGGGGTTTTAATATTACCAAAGTCAGCAGGAGCGAGCCAGTAACATCCTAGCTGG 1916
consensus_221#1 ------------------------------------------------------------
consensus_221#0 ACCAGCTTCCTGGGAA 1932
consensus_221#1 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||