cluster # 2227

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Oryza sativa
cluster # 2227 cluster # 2227 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2227#0 length = 916 sequences # 1

consensus_2227#1 length = 693 sequences # 1

consensusID : consensus_2227#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 916
fasta sequence

                              [CAAATCTGCACCAACGACGAGACTTCAATAACGATACCAACGACATCTAATTTTTCTTCTCCTTGCCGCCAACCTACTTGGGTTTTTGTCCGCAAACATCATACATTCACAATGGCTTTGAAGCGCATTAACAAGGAGCTCACTGATCTCGGCCGTGATCCTCCCTCATCATGCTCGGCCGGACCTGTTGGCGAGGATCTGTTCCACTGGCAAGCAACTATCATGGGTCCTAGCGACTCTCCGTACGCTGGCGGCGTGTTCTTCTTGGCGATCCACTTCCCTACCGACTACCCCTTCAAGCCCCCGAAGGTCAACTNTACCACCCGCATCTACCACCCGAATATCAACAGCAACGGCAGCATCTGCCTCGACATTCTGCGAGACCAATGGAGCCCGGCTCTGACTATNTCTAAAGTTCTTCTCTTCATCTGCTCTATGCTTAACCGACCCAACCCGACGCCCCGTCGTTCCGAGATTGCCACGTCTACAAGACGGCGCGGGCCAGTACGAGAGCACGGCCCGGAGTTAACTCGTAAGTCGCGTCTAGGTATCGTTTAAGGGTGACGAGTGAGAGGAAACACCNGGCTCAATACCATTGTGCGTTGGCGAGATGATAACCAGGAAAGAATCCTACCTTTGGCCAACTATTCTATCCTTTGAAGCGCAAAGTTGTTATCCTCCCTACAGGTCTTACCATATCCTCCAATTGGTTTTATTGGACCCACTAGATGCCTGGAGTACATAGGCGATTTATGCGGGTTATGACTGCCCGCCTTTCCGCCTCTTATGTAAAAAAATACACAAAGGGGCGTATAATCTGGTCCCGCGCGGGCGTGTTGGTTTGTGGTTTTATAAATATAAAAAAAATATAAAAAAAAAAAAANATAAGGGGTGGGTGTATAGTGCCTAAAATAGA]

[+] EMBL AW155565             [CAAATCTGCACCAACGACGAGACTTCAATAACGATACCAACGACATCTAATTTTTCTTCTCCTTGCCGCCAACCTACTTGGGTTTTTGTCCGCAAACATCATACATTCACAATGGCTTTGAAGCGCATTAACAAGGAGCTCACTGATCTCGGCCGTGATCCTCCCTCATCATGCTCGGCCGGACCTGTTGGCGAGGATCTGTTCCACTGGCAAGCAACTATCATGGGTCCTAGCGACTCTCCGTACGCTGGCGGCGTGTTCTTCTTGGCGATCCACTTCCCTACCGACTACCCCTTCAAGCCCCCGAAGGTCAACTNTACCACCCGCATCTACCACCCGAATATCAACAGCAACGGCAGCATCTGCCTCGACATTCTGCGAGACCAATGGAGCCCGGCTCTGACTATNTCTAAAGTTCTTCTCTTCATCTGCTCTATGCTTAACCGACCCAACCCGACGCCCCGTCGTTCCGAGATTGCCACGTCTACAAGACGGCGCGGGCCAGTACGAGAGCACGGCCCGGAGTTAACTCGTAAGTCGCGTCTAGGTATCGTTTAAGGGTGACGAGTGAGAGGAAACACCNGGCTCAATACCATTGTGCGTTGGCGAGATGATAACCAGGAAAGAATCCTACCTTTGGCCAACTATTCTATCCTTTGAAGCGCAAAGTTGTTATCCTCCCTACAGGTCTTACCATATCCTCCAATTGGTTTTATTGGACCCACTAGATGCCTGGAGTACATAGGCGATTTATGCGGGTTATGACTGCCCGCCTTTCCGCCTCTTATGTAAAAAAATACACAAAGGGGCGTATAATCTGGTCCCGCGCGGGCGTGTTGGTTTGTGGTTTTATAAATATAAAAAAAATATAAAAAAAAAAAAANATAAGGGGTGGGTGTATAGTGCCTAAAATAGA]




>consensus_2227#0
CAAATCTGCACCAACGACGAGACTTCAATAACGATACCAACGACATCTAATTTTTCTTCT
CCTTGCCGCCAACCTACTTGGGTTTTTGTCCGCAAACATCATACATTCACAATGGCTTTG
AAGCGCATTAACAAGGAGCTCACTGATCTCGGCCGTGATCCTCCCTCATCATGCTCGGCC
GGACCTGTTGGCGAGGATCTGTTCCACTGGCAAGCAACTATCATGGGTCCTAGCGACTCT
CCGTACGCTGGCGGCGTGTTCTTCTTGGCGATCCACTTCCCTACCGACTACCCCTTCAAG
CCCCCGAAGGTCAACTNTACCACCCGCATCTACCACCCGAATATCAACAGCAACGGCAGC
ATCTGCCTCGACATTCTGCGAGACCAATGGAGCCCGGCTCTGACTATNTCTAAAGTTCTT
CTCTTCATCTGCTCTATGCTTAACCGACCCAACCCGACGCCCCGTCGTTCCGAGATTGCC
ACGTCTACAAGACGGCGCGGGCCAGTACGAGAGCACGGCCCGGAGTTAACTCGTAAGTCG
CGTCTAGGTATCGTTTAAGGGTGACGAGTGAGAGGAAACACCNGGCTCAATACCATTGTG
CGTTGGCGAGATGATAACCAGGAAAGAATCCTACCTTTGGCCAACTATTCTATCCTTTGA
AGCGCAAAGTTGTTATCCTCCCTACAGGTCTTACCATATCCTCCAATTGGTTTTATTGGA
CCCACTAGATGCCTGGAGTACATAGGCGATTTATGCGGGTTATGACTGCCCGCCTTTCCG
CCTCTTATGTAAAAAAATACACAAAGGGGCGTATAATCTGGTCCCGCGCGGGCGTGTTGG
TTTGTGGTTTTATAAATATAAAAAAAATATAAAAAAAAAAAAANATAAGGGGTGGGTGTA
TAGTGCCTAAAATAGA

consensusID : consensus_2227#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence

                              [CAAATCTGCACCAACGACGAGACTTCAATAACGATACCGACGACATCTAATTGTTCTTCTCCTTCCCGCCAACCTACTTGGGTTTTTGTCCGCAAACATCATACATTCACAATGGCTTTGAAGCGCATTAACAAGGAGCTCACTGATCTCGGCCGTGATCCTCCCTCATCATGCTCGGCCGGACCTGTTGGCGAGGATCTGTTCCACTGGCAAGCAACTATCATGGGTCCTAGCGACTCTCCGTACGCTGGCGGCGTGTTCTTCTTGGCGATCCACTTCCCTACCGACTACCCCTTCAAGCCCCCGAAGGTCAACTTTACCACCCGCATCTACCACCCGAATATCAACAGCAACGGCAGCATCTGCCTCGACATTCTGCGAGACCAATGGAGCCCGGCTCTGACTATTTCTAAAGTTCTTCTCTNCATCTGGTCTATGCTTACCGAACCCAAACCCGAAGAACCGGTTGGTCCGAAAATGCCAACGTATACAGACGGCNCGGGCCAGTACCAGAGCACGGCACGGGAGTGGACTCTAAGTACGCGATCTAGGTATCGTTCAAAGGGTGACGGAGGTGAAGAGGGAAACACANGGGCTCNATATCAATTGGTGCGGTGGCGGAGATGATTGACCCAGGGAGAGAATGCTTACCGCTCTGGACAACCATTTTCCATCCTTTTCCGGATGCAAAAA]

[+] EMBL AW155383             [CAAATCTGCACCAACGACGAGACTTCAATAACGATACCGACGACATCTAATTGTTCTTCTCCTTCCCGCCAACCTACTTGGGTTTTTGTCCGCAAACATCATACATTCACAATGGCTTTGAAGCGCATTAACAAGGAGCTCACTGATCTCGGCCGTGATCCTCCCTCATCATGCTCGGCCGGACCTGTTGGCGAGGATCTGTTCCACTGGCAAGCAACTATCATGGGTCCTAGCGACTCTCCGTACGCTGGCGGCGTGTTCTTCTTGGCGATCCACTTCCCTACCGACTACCCCTTCAAGCCCCCGAAGGTCAACTTTACCACCCGCATCTACCACCCGAATATCAACAGCAACGGCAGCATCTGCCTCGACATTCTGCGAGACCAATGGAGCCCGGCTCTGACTATTTCTAAAGTTCTTCTCTNCATCTGGTCTATGCTTACCGAACCCAAACCCGAAGAACCGGTTGGTCCGAAAATGCCAACGTATACAGACGGCNCGGGCCAGTACCAGAGCACGGCACGGGAGTGGACTCTAAGTACGCGATCTAGGTATCGTTCAAAGGGTGACGGAGGTGAAGAGGGAAACACANGGGCTCNATATCAATTGGTGCGGTGGCGGAGATGATTGACCCAGGGAGAGAATGCTTACCGCTCTGGACAACCATTTTCCATCCTTTTCCGGATGCAAAAA]




>consensus_2227#1
CAAATCTGCACCAACGACGAGACTTCAATAACGATACCGACGACATCTAATTGTTCTTCT
CCTTCCCGCCAACCTACTTGGGTTTTTGTCCGCAAACATCATACATTCACAATGGCTTTG
AAGCGCATTAACAAGGAGCTCACTGATCTCGGCCGTGATCCTCCCTCATCATGCTCGGCC
GGACCTGTTGGCGAGGATCTGTTCCACTGGCAAGCAACTATCATGGGTCCTAGCGACTCT
CCGTACGCTGGCGGCGTGTTCTTCTTGGCGATCCACTTCCCTACCGACTACCCCTTCAAG
CCCCCGAAGGTCAACTTTACCACCCGCATCTACCACCCGAATATCAACAGCAACGGCAGC
ATCTGCCTCGACATTCTGCGAGACCAATGGAGCCCGGCTCTGACTATTTCTAAAGTTCTT
CTCTNCATCTGGTCTATGCTTACCGAACCCAAACCCGAAGAACCGGTTGGTCCGAAAATG
CCAACGTATACAGACGGCNCGGGCCAGTACCAGAGCACGGCACGGGAGTGGACTCTAAGT
ACGCGATCTAGGTATCGTTCAAAGGGTGACGGAGGTGAAGAGGGAAACACANGGGCTCNA
TATCAATTGGTGCGGTGGCGGAGATGATTGACCCAGGGAGAGAATGCTTACCGCTCTGGA
CAACCATTTTCCATCCTTTTCCGGATGCAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2227#0      CAAATCTGCACCAACGACGAGACTTCAATAACGATACCAACGACATCTAATTTTTCTTCT 60
consensus_2227#1      CAAATCTGCACCAACGACGAGACTTCAATAACGATACCGACGACATCTAATTGTTCTTCT 60
                      ************************************** ************* *******

consensus_2227#0      CCTTGCCGCCAACCTACTTGGGTTTTTGTCCGCAAACATCATACATTCACAATGGCTTTG 120
consensus_2227#1      CCTTCCCGCCAACCTACTTGGGTTTTTGTCCGCAAACATCATACATTCACAATGGCTTTG 120
                      **** *******************************************************

consensus_2227#0      AAGCGCATTAACAAGGAGCTCACTGATCTCGGCCGTGATCCTCCCTCATCATGCTCGGCC 180
consensus_2227#1      AAGCGCATTAACAAGGAGCTCACTGATCTCGGCCGTGATCCTCCCTCATCATGCTCGGCC 180
                      ************************************************************

consensus_2227#0      GGACCTGTTGGCGAGGATCTGTTCCACTGGCAAGCAACTATCATGGGTCCTAGCGACTCT 240
consensus_2227#1      GGACCTGTTGGCGAGGATCTGTTCCACTGGCAAGCAACTATCATGGGTCCTAGCGACTCT 240
                      ************************************************************

consensus_2227#0      CCGTACGCTGGCGGCGTGTTCTTCTTGGCGATCCACTTCCCTACCGACTACCCCTTCAAG 300
consensus_2227#1      CCGTACGCTGGCGGCGTGTTCTTCTTGGCGATCCACTTCCCTACCGACTACCCCTTCAAG 300
                      ************************************************************

consensus_2227#0      CCCCCGAAGGTCAACTNTACCACCCGCATCTACCACCCGAATATCAACAGCAACGGCAGC 360
consensus_2227#1      CCCCCGAAGGTCAACTTTACCACCCGCATCTACCACCCGAATATCAACAGCAACGGCAGC 360
                      **************** *******************************************

consensus_2227#0      ATCTGCCTCGACATTCTGCGAGACCAATGGAGCCCGGCTCTGACTATNTCTAAAGTTCTT 420
consensus_2227#1      ATCTGCCTCGACATTCTGCGAGACCAATGGAGCCCGGCTCTGACTATTTCTAAAGTTCTT 420
                      *********************************************** ************

consensus_2227#0      CTCTTCATCTGCTCTATGCTTAACCGACCCAA-CCCGACGCCCCG-TCGTTCCGAGATTG 478
consensus_2227#1      CTCTNCATCTGGTCTATGCTTACCGAACCCAAACCCGAAGAACCGGTTGGTCCGAAAATG 480
                      **** ****** ********** *  ****** ***** *  *** * * ***** * **

consensus_2227#0      CCA-CGTCTACAAGACGGCGCGGGCCAGTACGAGAGCACGGCCCGGAGTTAACTCGTAAG 537
consensus_2227#1      CCAACGTATACA-GACGGCNCGGGCCAGTACCAGAGCACGGCACGGGAGTGGACTCTAAG 539
                      *** *** **** ****** *********** ********** ***   *      ****

consensus_2227#0      T-CGCG-TCTAGGTATCGTTTAA-GGGTGACGAGTGAGA----GGAAACAC-CNGGCTCA 589
consensus_2227#1      TACGCGATCTAGGTATCGTTCAAAGGGTGACGGAGGTGAAGAGGGAAACACANGGGCTCN 599
                      * **** ************* ** ********   * **    ********   ***** 

consensus_2227#0      ATACCATT--GTGCGTTGGCG-AGATGAT--AACCAGGAA-AGAAT-CCTACC--TTTGG 640
consensus_2227#1      ATATCAATTGGTGCGGTGGCGGAGATGATTGACCCAGGGAGAGAATGCTTACCGCTCTGG 659
                      *** ** *  ***** ***** *******  * ***** * ***** * ****  * ***

consensus_2227#0      CCAACTATTCT--ATCCTTTG--AAGCGCAAAGTTGTTATCCTCCCTACAGGTCTTACCA 696
consensus_2227#1      ACAACCATTTTCCATCCTTTTCCGGATGCAAAAA-------------------------- 693
                       **** *** *  *******       *****                            

consensus_2227#0      TATCCTCCAATTGGTTTTATTGGACCCACTAGATGCCTGGAGTACATAGGCGATTTATGC 756
consensus_2227#1      ------------------------------------------------------------
                                                                                  

consensus_2227#0      GGGTTATGACTGCCCGCCTTTCCGCCTCTTATGTAAAAAAATACACAAAGGGGCGTATAA 816
consensus_2227#1      ------------------------------------------------------------
                                                                                  

consensus_2227#0      TCTGGTCCCGCGCGGGCGTGTTGGTTTGTGGTTTTATAAATATAAAAAAAATATAAAAAA 876
consensus_2227#1      ------------------------------------------------------------
                                                                                  

consensus_2227#0      AAAAAAANATAAGGGGTGGGTGTATAGTGCCTAAAATAGA 916
consensus_2227#1      ----------------------------------------