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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence
[AAGCCTCCAAGCCGCCGCCTCTCCCGCCCTACCCGGAGATGATACTGGCGGCGATCGAGGGGCTGAACGAGAAGAGCGGGTCGAACAAGTCGGCGATCTCCAAGTTCATCGAGGGGAAGTACGGGGACCTGCCGCCGGCGCACGCGTCGCTGCTCACGGCGCACCTGGCCAGGATGAAGGAGTCCGGTGAGCTCATCTTTCTCAAGTACAACTACTTTCGCGCCGACGCGCCCGACGCGCCGTCCAAGCGCGGTCGGAGCCGTCCTTCTTTGTTCTCTCTTCCCTTCTTTTAATACGATCTCCTCCTCTTTTTTTTTTTTATTCTTTCCTGGCGCTTCTTTTTCTTTATTTTTTTTCTGTGTTCGTTTGGTTTTACTGTTCTTTTTTTTTTGTTTCTTGTTTCTCTTTGCTGTCTCGTCTTGTGTTTGTCTTTTGTGCCTTGTTATGTTGTGTGTGTTGGGGTTCAGCGCTTTGTTGTTTTTTTTTGTCTTGGTTTTTGTTGTTTTCTTCCTGGCGTCGTTGTGTGTGTGTCTTTGACTTTCGGTGTCGTGTTGTCGCTCTCCTTCCTCTTGCCTTTTGCCCATTCTTTGTTCTGTCTCTCTTCTATCCCCCCAGTATTCTTTTGTGTTTGTGCCGTTTCTTTCTGTTCTCTAGCTATGTCTTGTTTTATTTTTTCATTGCGTGTTTTGTTTTTTTTCTGGTTTGTTATTTCTTCAGTTGTTCTCTCCTCTCGTGGTTTTCTTCTTGTGTTTTGTTATATTTAGTTGTTGATT]
[+] EMBL BE041029 [AAGCCTCCAAGCCGCCGCCTCTCCCGCCCTACCCGGAGATGATACTGGCGGCGATCGAGGGGCTGAACGAGAAGAGCGGGTCGAACAAGTCGGCGATCTCCAAGTTCATCGAGGGGAAGTACGGGGACCTGCCGCCGGCGCACGCGTCGCTGCTCACGGCGCACCTGGCCAGGATGAAGGAGTCCGGTGAGCTCATCTTTCTCAAGTACAACTACTTTCGCGCCGACGCGCCCGACGCGCCGTCCAAGCGCGGTCGGAGCCGTCCTTCTTTGTTCTCTCTTCCCTTCTTTTAATACGATCTCCTCCTCTTTTTTTTTTTTATTCTTTCCTGGCGCTTCTTTTTCTTTATTTTTTTTCTGTGTTCGTTTGGTTTTACTGTTCTTTTTTTTTTGTTTCTTGTTTCTCTTTGCTGTCTCGTCTTGTGTTTGTCTTTTGTGCCTTGTTATGTTGTGTGTGTTGGGGTTCAGCGCTTTGTTGTTTTTTTTTGTCTTGGTTTTTGTTGTTTTCTTCCTGGCGTCGTTGTGTGTGTGTCTTTGACTTTCGGTGTCGTGTTGTCGCTCTCCTTCCTCTTGCCTTTTGCCCATTCTTTGTTCTGTCTCTCTTCTATCCCCCCAGTATTCTTTTGTGTTTGTGCCGTTTCTTTCTGTTCTCTAGCTATGTCTTGTTTTATTTTTTCATTGCGTGTTTTGTTTTTTTTCTGGTTTGTTATTTCTTCAGTTGTTCTCTCCTCTCGTGGTTTTCTTCTTGTGTTTTGTTATATTTAGTTGTTGATT]
consensusID : consensus_2228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence
[CCTCTCCTCCTCCGCCATGGCCGCCGCTGACGAAGCCTCCAAGCCGCCGCCTCTCCCGCCCTACCCGGAGATGATACTGGCGGCGATCGAGGGGCTGAACGAGAAGAGCGGGTCGAACAAGTCGGCGATCTCCAAGTTCATCGAGGGGAAGTACGGGGACCTGCCGCCGGCGCACGCGTCGCTGCTCACGGCGCACCTGGCCAGGATGAAGGAGTCCGGCGAGCTCATCTTCCTCAAGAACAACTACTTCCGCGCCGACGCGCCCGACGCGCCGCCCAAGCGCGGCCGGGGTCGCCCCCCCAAGCCGCGGGACCCCAACGCGCCGCCGCCGCCGCCCAAGCCCTCCTCGCCACGCCCCCGCGGCCGCCCGCCCAAGTCCAAGGACCCCATCTCCGACGCCATCCCCAAGTCCCGCGGCCGCCCGCCCAAGAAGGCCAAGACGGCTCCCGCCCCTCCTCCCGCCGCCGGCGACGGCTCCGCTC]
[-] EMBL BI306480 [CCTCTCCTCCTCCGCCATGGCCGCCGCTGACGAAGCCTCCAAGCCGCCGCCTCTCCCGCCCTACCCGGAGATGATACTGGCGGCGATCGAGGGGCTGAACGAGAAGAGCGGGTCGAACAAGTCGGCGATCTCCAAGTTCATCGAGGGGAAGTACGGGGACCTGCCGCCGGCGCACGCGTCGCTGCTCACGGCGCACCTGGCCAGGATGAAGGAGTCCGGCGAGCTCATCTTCCTCAAGAACAACTACTTCCGCGCCGACGCGCCCGACGCGCCGCCCAAGCGCGGCCGGGGTCGCCCCCCCAAGCCGCGGGACCCCAACGCGCCGCCGCCGCCGCCCAAGCCCTCCTCGCCACGCCCCCGCGGCCGCCCGCCCAAGTCCAAGGACCCCATCTCCGACGCCATCCCCAAGTCCCGCGGCCGCCCGCCCAAGAAGGCCAAGACGGCTCCCGCCCCTCCTCCCGCCGCCGGCGACGGCTCCGCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2228#0 --------------------------------AAGCCTCCAAGCCGCCGCCTCTCCCGCC 28
consensus_2228#1 CCTCTCCTCCTCCGCCATGGCCGCCGCTGACGAAGCCTCCAAGCCGCCGCCTCTCCCGCC 60
****************************
consensus_2228#0 CTACCCGGAGATGATACTGGCGGCGATCGAGGGGCTGAACGAGAAGAGCGGGTCGAACAA 88
consensus_2228#1 CTACCCGGAGATGATACTGGCGGCGATCGAGGGGCTGAACGAGAAGAGCGGGTCGAACAA 120
************************************************************
consensus_2228#0 GTCGGCGATCTCCAAGTTCATCGAGGGGAAGTACGGGGACCTGCCGCCGGCGCACGCGTC 148
consensus_2228#1 GTCGGCGATCTCCAAGTTCATCGAGGGGAAGTACGGGGACCTGCCGCCGGCGCACGCGTC 180
************************************************************
consensus_2228#0 GCTGCTCACGGCGCACCTGGCCAGGATGAAGGAGTCCGGTGAGCTCATCTTTCTCAAGTA 208
consensus_2228#1 GCTGCTCACGGCGCACCTGGCCAGGATGAAGGAGTCCGGCGAGCTCATCTTCCTCAAGAA 240
*************************************** *********** ****** *
consensus_2228#0 CAACTACTTTCGCGCCGACGCGCCCGACGCGCCGTCCAAGCGCGGTCGGAGCCGTCCTTC 268
consensus_2228#1 CAACTACTTCCGCGCCGACGCGCCCGACGCGCCGCCCAAGCGCGGCCGGGGTCGCCCCCC 300
********* ************************ ********** *** * ** ** *
consensus_2228#0 TTTGTTCTCTCTTCCCTTCTTTTAATACGATCTCCTCCTCTTTTTTTTTTTTATTCTTTC 328
consensus_2228#1 CAAGCCGCGGGACCCC-------AACGCG-CCGCCGCCGCCGCCC-------AAGCCCTC 345
* *** ** ** * ** ** * * * **
consensus_2228#0 CTGGCGCTTCTTTTTCTTTATTTTTTTTCTGTGTTCGTTTGGTTTTACTGTTCTTTTTTT 388
consensus_2228#1 CT--CGCCACGCCCCCGCGGCCGCCCGCCCAAGTCCAAGGACCCCATCTCCGACGCCATC 403
** *** * * * ** * ** *
consensus_2228#0 TTTGTTTCTTGTTTCTCTTTGCTGTCTCGTCTTGTGTTTGTCTTTTGTGCCTTGTTATGT 448
consensus_2228#1 CCCAAGTCCCGCGGCCGCCCGCCCAAGAAGGCCAAGACGG-CTCCCGCCCCTCCTCCCGC 462
** * * ** * * ** * *** * *
consensus_2228#0 TGTGTGTGTTGGGGTTCAGCGCTTTGTTGTTTTTTTTTGTCTTGGTTTTTGTTGTTTTCT 508
consensus_2228#1 CGCCGGCGACG--GCTCCGCTC-------------------------------------- 482
* * * * * ** ** *
consensus_2228#0 TCCTGGCGTCGTTGTGTGTGTGTCTTTGACTTTCGGTGTCGTGTTGTCGCTCTCCTTCCT 568
consensus_2228#1 ------------------------------------------------------------
consensus_2228#0 CTTGCCTTTTGCCCATTCTTTGTTCTGTCTCTCTTCTATCCCCCCAGTATTCTTTTGTGT 628
consensus_2228#1 ------------------------------------------------------------
consensus_2228#0 TTGTGCCGTTTCTTTCTGTTCTCTAGCTATGTCTTGTTTTATTTTTTCATTGCGTGTTTT 688
consensus_2228#1 ------------------------------------------------------------
consensus_2228#0 GTTTTTTTTCTGGTTTGTTATTTCTTCAGTTGTTCTCTCCTCTCGTGGTTTTCTTCTTGT 748
consensus_2228#1 ------------------------------------------------------------
consensus_2228#0 GTTTTGTTATATTTAGTTGTTGATT 773
consensus_2228#1 -------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||