|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_223#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1902 fasta sequence
[CCCAGGGTTATTGCAGCCATTGGAGGTACCTTCTCAATCATGGCAAGTAATTACTATGGATTTTATCGAAGGTTTACCCAGATCGGCTTCATTTGACTGTATACTGGTTATTGTGGATAAATTCTCTAAGTTTGCTCATTTTTTTACCCCTGAAACACCCCTTTACTGCCTTTGGAGTGGCTCAGCTTTTCATGGAACATATTCATAGTACACATGGTTTACCTCAAGCTATTGTATCTGACCGTGATCGAGTGTTCACTAGTTCTCTTTGGAAGGAATTGTTTCGCCGAGCTGGTACTCAACTCCGAATGAGTTCTTCGTATCACCCACAATCGGATGGACAAACAGAGCGTGTGAATCAATGTGTGGAAATGTTTTTGCGCTGCTTTGTTCATTCTTGTCCTTCTCGGTGGAAGCATTGGCTGGCATTGGCTCAATGTTGGCACAATACGTCATTTCATTCAGCCTTGGGTATGACTCCTTTTGAAGTATTATTTGGGCACAAACCTCGTTACTTTGGATTATCCACTTCATCTGTTGATGCTCCTGGAGATCTTGCAAGTTGGTTAAGTGAGCGAAATGACATGAATACTTTGATTCATCATCATTTGTTGCGAGCTCAGCAACGGATGAAGAGCCAAGCTGATTCGAAGCGATCTGAGCGTTGTTTTGCGGTTGGTGATTGGGTGTTCATGAAATTACAACCATATATTCAACAATCAGTTATGACTCGATCTAACAGGAAGTTATCCTTCAAATATTATGGTCCATTTCAAGTCTTACAACGAATTGGATTGGTGGCTTACAGATTACAGTTGCCTGCTCACAGCTTAATACACCCTGTCGTCCATGTGTCTCAGCTCAAGAAGGCTCTCGCACCATCTGAAGCAGTTCAGCCTTCTTTGCCTGTGTTGAATCCTGATGCTGGTCATTTAGCGATTCCAATCAAAATTCTGGATCATCGTTCGATTCGTCGAGGTTCCAAGATGATCAAGCAAGTTCTAATTCGTTGGTCCGGTGTGTCTTCTTCTGCTGACACCTGGGAGAGTTTAGATGAAATGCAAGCTAAGTTTCCAGCTGCACCAGCCTGGGGACAGGCTGAAACTCAAGGAGGGAGGAATGTTACGGCATCAATACAGAGCACTACCCATAACTCTAGTATCATTGGGCCTAGAAGATCCAAACGAGAAGTCCACACCAACCCAAAGTATATGGGCTGTGATTGGTCTAATAGTTGAGGAAGTCTATAAATACTAGAAGGATCTTCTAGAGGCGGGTGTGGTAATTGAATCTAACTTCTATCTGAAGAAATCATTCCTCCTCCTAACTTTGTTTCCTTCTTCCTCTGCTCTGAAATGCTCTGTTCTGTTCTGTTCTTCCTCCTCATCCCCAATTTCATCTGTGATTCGATCTAGGGTTCGTAACAGAAGCTTGCGGGGAGTCGGGACAGCGTTGAAGGTAGAGCGGAGGAGAGCGGCCTGCGGCCCGCGTGGGAAGCGGCACGGCGGACGGTGATCAGCCTTGGCGAGAGGAGGAGGGGGACGTGGGCTTCGATTGGAGGAGCAGGTGGTGGTATCTCGCTAGCATTGGCCGAATGGAATGGACATGGACACGCCTGCTCTCTTTTTAAAGGCTGCCATCCTATACTTTTATACGTACATATACGCCGCAATCTTCTTGAATGGCAAGAAACCTCTCTCAACCGACGGATCATGAATCAACGGTGGAGATCCCTTCAGTTGATCAGTAATATACCTGTGCTTCTATCTGCTATGTTTTTGGAAAACTAGGAAGGTGGCCCGCGCGCATGCGTGGGCACTTATATTATTGAAAGATAAGATTATTGTTGTTCAAAAATTTTGTCTCATAGATTAAGGGCAAACTAAAGCTCGGATAATGTCA]
[+] EMBL AK062587 [CCCAGGGTTATTGCAGCCATTGGAGGTACCTTCTCAATCATGGCAAGTAATTACTATGGATTTTATCGAAGGTTTACCCAGATCGGCTTCATTTGACTGTATACTGGTTATTGTGGATAAATTCTCTAAGTTTGCTCATTTTTTTACCCCTGAAACACCCCTTTACTGCCTTTGGAGTGGCTCAGCTTTTCATGGAACATATTCATAGTACACATGGTTTACCTCAAGCTATTGTATCTGACCGTGATCGAGTGTTCACTAGTTCTCTTTGGAAGGAATTGTTTCGCCGAGCTGGTACTCAACTCCGAATGAGTTCTTCGTATCACCCACAATCGGATGGACAAACAGAGCGTGTGAATCAATGTGTGGAAATGTTTTTGCGCTGCTTTGTTCATTCTTGTCCTTCTCGGTGGAAGCATTGGCTGGCATTGGCTCAATGTTGGCACAATACGTCATTTCATTCAGCCTTGGGTATGACTCCTTTTGAAGTATTATTTGGGCACAAACCTCGTTACTTTGGATTATCCACTTCATCTGTTGATGCTCCTGGAGATCTTGCAAGTTGGTTAAGTGAGCGAAATGACATGAATACTTTGATTCATCATCATTTGTTGCGAGCTCAGCAACGGATGAAGAGCCAAGCTGATTCGAAGCGATCTGAGCGTTGTTTTGCGGTTGGTGATTGGGTGTTCATGAAATTACAACCATATATTCAACAATCAGTTATGACTCGATCTAACAGGAAGTTATCCTTCAAATATTATGGTCCATTTCAAGTCTTACAACGAATTGGATTGGTGGCTTACAGATTACAGTTGCCTGCTCACAGCTTAATACACCCTGTCGTCCATGTGTCTCAGCTCAAGAAGGCTCTCGCACCATCTGAAGCAGTTCAGCCTTCTTTGCCTGTGTTGAATCCTGATGCTGGTCATTTAGCGATTCCAATCAAAATTCTGGATCATCGTTCGATTCGTCGAGGTTCCAAGATGATCAAGCAAGTTCTAATTCGTTGGTCCGGTGTGTCTTCTTCTGCTGACACCTGGGAGAGTTTAGATGAAATGCAAGCTAAGTTTCCAGCTGCACCAGCCTGGGGACAGGCTGAAACTCAAGGAGGGAGGAATGTTACGGCATCAATACAGAGCACTACCCATAACTCTAGTATCATTGGGCCTAGAAGATCCAAACGAGAAGTCCACACCAACCCAAAGTATATGGGCTGTGATTGGTCTAATAGTTGAGGAAGTCTATAAATACTAGAAGGATCTTCTAGAGGCGGGTGTGGTAATTGAATCTAACTTCTATCTGAAGAAATCATTCCTCCTCCTAACTTTGTTTCCTTCTTCCTCTGCTCTGAAATGCTCTGTTCTGTTCTGTTCTTCCTCCTCATCCCCAATTTCATCTGTGATTCGATCTAGGGTTCGTAACAGAAGCTTGCGGGGAGTCGGGACAGCGTTGAAGGTAGAGCGGAGGAGAGCGGCCTGCGGCCCGCGTGGGAAGCGGCACGGCGGACGGTGATCAGCCTTGGCGAGAGGAGGAGGGGGACGTGGGCTTCGATTGGAGGAGCAGGTGGTGGTATCTCGCTAGCATTGGCCGAATGGAATGGACATGGACACGCCTGCTCTCTTTTTAAAGGCTGCCATCCTATACTTTTATACGTACATATACGCCGCAATCTTCTTGAATGGCAAGAAACCTCTCTCAACCGACGGATCATGAATCAACGGTGGAGATCCCTTCAGTTGATCAGTAATATACCTGTGCTTCTATCTGCTATGTTTTTGGAAAACTAGGAAGGTGGCCCGCGCGCATGCGTGGGCACTTATATTATTGAAAGATAAGATTATTGTTGTTCAAAAATTTTGTCTCATAGATTAAGGGCAAACTAAAGCTCGGATAATGTCA]
consensusID : consensus_223#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence
[AGACAAGAGGGTAAAGAGACCGAAGAGGAAAAGGCAAGTGAGGGTGACCTCCGTGCCGGCGGATGACGGCTACAGCTGGAGGAAGTACGGGCGGAAGAACGTCCTCGGCTTCAGTTACCTAAGGGGTTACTACAGGTGTGCCACCAAGGGCTGCCAGGCGTCCAAGCAAGTGCAGCGCCACGACGACGGCTTGCTCTTCGACGCCACATACTTGGGTGAGCACACCTGCGCTGATCAGCCTCAGGCAGCGCACTCCAGCGACCAAGTACAGGTCACATTATGGCCGCCTGCCGTAAGCCCAGAGCAACCGCTCACACCGCAATCCGGGCTCGAGCAGAGCTCCACTGTCACTGTTACTGCATCAATACAGAGCACTACCCATAACTCTAGTATCATTGGGCCTAGAAGATCCAAACGAGAAGTCCACACCAACCCAAAGTATATGGGCTGTGATTGGGTTACTGGTTGAGGAAGTCTATAAATACTAGAAGGATCTTCTAGAGGCGTGCGTTGTAATTGAATCAAAACTTCTATCTGAAGAAAATCATTCCTCCTCCTAAAAAAAAAAAA]
[-] EMBL CA760141 [AGACAAGAGGGTAAAGAGACCGAAGAGGAAAAGGCAAGTGAGGGTGACCTCCGTGCCGGCGGATGACGGCTACAGCTGGAGGAAGTACGGGCGGAAGAACGTCCTCGGCTTCAGTTACCTAAGGGGTTACTACAGGTGTGCCACCAAGGGCTGCCAGGCGTCCAAGCAAGTGCAGCGCCACGACGACGGCTTGCTCTTCGACGCCACATACTTGGGTGAGCACACCTGCGCTGATCAGCCTCAGGCAGCGCACTCCAGCGACCAAGTACAGGTCACATTATGGCCGCCTGCCGTAAGCCCAGAGCAACCGCTCACACCGCAATCCGGGCTCGAGCAGAGCTCCACTGTCACTGTTACTGCATCAATACAGAGCACTACCCATAACTCTAGTATCATTGGGCCTAGAAGATCCAAACGAGAAGTCCACACCAACCCAAAGTATATGGGCTGTGATTGGGTTACTGGTTGAGGAAGTCTATAAATACTAGAAGGATCTTCTAGAGGCGTGCGTTGTAATTGAATCAAAACTTCTATCTGAAGAAAATCATTCCTCCTCCTAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_223#0 CCCAGGGTTATTGCAGCCATTGGAGGTACCTTCTCAATCATGGCAAGTAATTACTATGGA 60
consensus_223#1 ------------------------------------------------------------
consensus_223#0 TTTTATCGAAGGTTTACCCAGATCGGCTTCATTTGACTGTATACTGGTTATTGTGGATAA 120
consensus_223#1 ------------------------------------------------------------
consensus_223#0 ATTCTCTAAGTTTGCTCATTTTTTTACCCCTGAAACACCCCTTTACTGCCTTTGGAGTGG 180
consensus_223#1 ------------------------------------------------------------
consensus_223#0 CTCAGCTTTTCATGGAACATATTCATAGTACACATGGTTTACCTCAAGCTATTGTATCTG 240
consensus_223#1 ------------------------------------------------------------
consensus_223#0 ACCGTGATCGAGTGTTCACTAGTTCTCTTTGGAAGGAATTGTTTCGCCGAGCTGGTACTC 300
consensus_223#1 ------------------------------------------------------------
consensus_223#0 AACTCCGAATGAGTTCTTCGTATCACCCACAATCGGATGGACAAACAGAGCGTGTGAATC 360
consensus_223#1 ------------------------------------------------------------
consensus_223#0 AATGTGTGGAAATGTTTTTGCGCTGCTTTGTTCATTCTTGTCCTTCTCGGTGGAAGCATT 420
consensus_223#1 ------------------------------------------------------------
consensus_223#0 GGCTGGCATTGGCTCAATGTTGGCACAATACGTCATTTCATTCAGCCTTGGGTATGACTC 480
consensus_223#1 ------------------------------------------------------------
consensus_223#0 CTTTTGAAGTATTATTTGGGCACAAACCTCGTTACTTTGGATTATCCACTTCATCTGTTG 540
consensus_223#1 ------------------------------------------------------------
consensus_223#0 ATGCTCCTGGAGATCTTGCAAGTTGGTTAAGTGAGCGAAATGACATGAATACTTTGATTC 600
consensus_223#1 ------------------------------------------------------------
consensus_223#0 ATCATCATTTGTTGCGAGCTCAGCAACGGATGAAGAGCCAAGCTGATTCGAAGCGATCTG 660
consensus_223#1 ------------------------------------------------------------
consensus_223#0 AGCGTTGTTTTGCGGTTGGTGATTGGGTGTTCATGAAATTACAACCATATATTCAACAAT 720
consensus_223#1 ------------------------------------------------------------
consensus_223#0 CAGTTATGACTCGATCTAACAGGAAGTTATCCTTCAAATATTATGGTCCATTTCAAGTCT 780
consensus_223#1 --------------------------------------------------AGACAAGAGG 10
****
consensus_223#0 TACAACGAATTGGATTGGTGGCTTACAGATTACAGTTGCCTGCTCACAGCTTAATACACC 840
consensus_223#1 GTAAAGAGACCGAAGAGGAAAAG-GCAAGTGAGGGTGACCTCCGTGCCGGCGGATGACGG 69
** * * * ** ** * * ** *** * * * **
consensus_223#0 CTGTCGTCCATGTGTCTCAGCTCAAGAAGGCTCTCGCACCATCTGAAGCAGTTCAGCCTT 900
consensus_223#1 CTACAGCTGGAGGAAGTACGGGCGGAAGAACGTCCTCGGCTTCAGTTACCTAAGGGGTTA 129
** * * * * * * * * * * ** * * * *
consensus_223#0 CTTTGCCTGTGTTGAATCCTGATGCTGGTCATTTA-GCGATTCCAAT--CAAAATTCTGG 957
consensus_223#1 CTACAGGTGTGCCACCAAGGGCTGCCAGGCGTCCAAGCAAGTGCAGCGCCACGACGACGG 189
** **** * *** * * * * ** * * ** ** * **
consensus_223#0 ATCATCGTTCGATTCGTCGAGGTTCCAAGATGATCAAGCAAGTTCTAATTCGT-TGGTCC 1016
consensus_223#1 CTTGCTCTTCGA--CGCC-ACATACTTGGGTGAGCACACCTGCGCTGATCAGCCTCAGGC 246
* ***** ** * * * * * *** ** * * ** ** * * *
consensus_223#0 GGTGTGTCTTCTTCTGCTGACACCTGGGAGAGTTTAGATGA--AATGCAAGCT--AAGTT 1072
consensus_223#1 AGCGCACTCCAGCGACCAAGTACAGGTCACATTATGGCCGCCTGCCGTAAGCCCAGAGCA 306
* * * ** * * * * * * * * **** **
consensus_223#0 TCCAGCTGCACC--AGCCTGGGGACAGGCTGAAACTCAAGGAGGGAGGAATGTTACGGCA 1130
consensus_223#1 ACCGCTCACACCGCAATCCGGGCTCGAGCAGAGCTCCACTGTC-----ACTGTTACTGCA 361
** **** * * *** * ** ** ** * * ****** ***
consensus_223#0 TCAATACAGAGCACTACCCATAACTCTAGTATCATTGGGCCTAGAAGATCCAAACGAGAA 1190
consensus_223#1 TCAATACAGAGCACTACCCATAACTCTAGTATCATTGGGCCTAGAAGATCCAAACGAGAA 421
************************************************************
consensus_223#0 GTCCACACCAACCCAAAGTATATGGGCTGTGATTGGTCTAATAGTTGAGGAAGTCTATAA 1250
consensus_223#1 GTCCACACCAACCCAAAGTATATGGGCTGTGATTGGGTTACTGGTTGAGGAAGTCTATAA 481
************************************ ** * *****************
consensus_223#0 ATACTAGAAGGATCTTCTAGAGGCGGGTGTGGTAATTGAATCTAA-CTTCTATCTGAAGA 1309
consensus_223#1 ATACTAGAAGGATCTTCTAGAGGCGTGCGTTGTAATTGAATCAAAACTTCTATCTGAAGA 541
************************* * ** *********** ** **************
consensus_223#0 AA-TCATTCCTCCTCCTAACTTTGTTTCCTTCTTCCTCTGCTCTGAAATGCTCTGTTCTG 1368
consensus_223#1 AAATCATTCCTCCTCCTAAAAAAAAAAAA------------------------------- 570
** ****************
consensus_223#0 TTCTGTTCTTCCTCCTCATCCCCAATTTCATCTGTGATTCGATCTAGGGTTCGTAACAGA 1428
consensus_223#1 ------------------------------------------------------------
consensus_223#0 AGCTTGCGGGGAGTCGGGACAGCGTTGAAGGTAGAGCGGAGGAGAGCGGCCTGCGGCCCG 1488
consensus_223#1 ------------------------------------------------------------
consensus_223#0 CGTGGGAAGCGGCACGGCGGACGGTGATCAGCCTTGGCGAGAGGAGGAGGGGGACGTGGG 1548
consensus_223#1 ------------------------------------------------------------
consensus_223#0 CTTCGATTGGAGGAGCAGGTGGTGGTATCTCGCTAGCATTGGCCGAATGGAATGGACATG 1608
consensus_223#1 ------------------------------------------------------------
consensus_223#0 GACACGCCTGCTCTCTTTTTAAAGGCTGCCATCCTATACTTTTATACGTACATATACGCC 1668
consensus_223#1 ------------------------------------------------------------
consensus_223#0 GCAATCTTCTTGAATGGCAAGAAACCTCTCTCAACCGACGGATCATGAATCAACGGTGGA 1728
consensus_223#1 ------------------------------------------------------------
consensus_223#0 GATCCCTTCAGTTGATCAGTAATATACCTGTGCTTCTATCTGCTATGTTTTTGGAAAACT 1788
consensus_223#1 ------------------------------------------------------------
consensus_223#0 AGGAAGGTGGCCCGCGCGCATGCGTGGGCACTTATATTATTGAAAGATAAGATTATTGTT 1848
consensus_223#1 ------------------------------------------------------------
consensus_223#0 GTTCAAAAATTTTGTCTCATAGATTAAGGGCAAACTAAAGCTCGGATAATGTCA 1902
consensus_223#1 ------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||