cluster # 2262

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Oryza sativa
cluster # 2262 cluster # 2262 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2262#0 length = 432 sequences # 1

consensus_2262#1 length = 179 sequences # 1

consensusID : consensus_2262#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [GGAAAGTGCATTTAACGGGGCAACGAACTAAGATAGTTGTTAAGGTGCACATGCCATGCGGAAAATCCCGAGCAAAAGCCATGGCGCTGGTTGCGTCAGTGAACGGTAAATCTGCGCAAATATATTCTTCCGGTTGTGCAGTCCTGATCAGTACTCCTACTATTTTATGCCTTTATGCTTGCAGGGGTGGAGAGCATGCAGAGCATGCAGATAACGGGGGAGGACAAAGACCGGCTGGAGGTGGTCGGCCGTGGTTTTGACCCTGTTCGCCTGGTGGCTCTCCTGCGCGAGAAATGTGGCCTCGCCGAGCTCTTGATGGTGGAGTTAGTTGAGAAAGAGAAGACACAGCTGGCTGGAGGAAAGAAAGGTGCATACAAGAAGCACCCTACCTACAATTTATCGCCGTTTGACTATGTANAGTATCCACCTTCC]

[+] EMBL AA751813             [GGAAAGTGCATTTAACGGGGCAACGAACTAAGATAGTTGTTAAGGTGCACATGCCATGCGGAAAATCCCGAGCAAAAGCCATGGCGCTGGTTGCGTCAGTGAACGGTAAATCTGCGCAAATATATTCTTCCGGTTGTGCAGTCCTGATCAGTACTCCTACTATTTTATGCCTTTATGCTTGCAGGGGTGGAGAGCATGCAGAGCATGCAGATAACGGGGGAGGACAAAGACCGGCTGGAGGTGGTCGGCCGTGGTTTTGACCCTGTTCGCCTGGTGGCTCTCCTGCGCGAGAAATGTGGCCTCGCCGAGCTCTTGATGGTGGAGTTAGTTGAGAAAGAGAAGACACAGCTGGCTGGAGGAAAGAAAGGTGCATACAAGAAGCACCCTACCTACAATTTATCGCCGTTTGACTATGTANAGTATCCACCTTCC]




>consensus_2262#0
GGAAAGTGCATTTAACGGGGCAACGAACTAAGATAGTTGTTAAGGTGCACATGCCATGCG
GAAAATCCCGAGCAAAAGCCATGGCGCTGGTTGCGTCAGTGAACGGTAAATCTGCGCAAA
TATATTCTTCCGGTTGTGCAGTCCTGATCAGTACTCCTACTATTTTATGCCTTTATGCTT
GCAGGGGTGGAGAGCATGCAGAGCATGCAGATAACGGGGGAGGACAAAGACCGGCTGGAG
GTGGTCGGCCGTGGTTTTGACCCTGTTCGCCTGGTGGCTCTCCTGCGCGAGAAATGTGGC
CTCGCCGAGCTCTTGATGGTGGAGTTAGTTGAGAAAGAGAAGACACAGCTGGCTGGAGGA
AAGAAAGGTGCATACAAGAAGCACCCTACCTACAATTTATCGCCGTTTGACTATGTANAG
TATCCACCTTCC

consensusID : consensus_2262#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 179
fasta sequence

                              [GATAGCGAGAAGAACACTGATAGAGTGCAAACAATTGTCACCCCAACTGTCAAACATGGAGAGTGTGGTGGAAANTGCATTAACGGGGCAACGAACTAAGATAGTTGTTAAGGTGCACATGCCATTCGGAAATTCCCNGCAAAAGCCATGGCGCTGGTTGCATCAGTGAATCGGTAATC]

[+] EMBL AA749822             [GATAGCGAGAAGAACACTGATAGAGTGCAAACAATTGTCACCCCAACTGTCAAACATGGAGAGTGTGGTGGAAANTGCATTAACGGGGCAACGAACTAAGATAGTTGTTAAGGTGCACATGCCATTCGGAAATTCCCNGCAAAAGCCATGGCGCTGGTTGCATCAGTGAATCGGTAATC]




>consensus_2262#1
GATAGCGAGAAGAACACTGATAGAGTGCAAACAATTGTCACCCCAACTGTCAAACATGGA
GAGTGTGGTGGAAANTGCATTAACGGGGCAACGAACTAAGATAGTTGTTAAGGTGCACAT
GCCATTCGGAAATTCCCNGCAAAAGCCATGGCGCTGGTTGCATCAGTGAATCGGTAATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2262#0      ------------------------------------------------------------
consensus_2262#1      GATAGCGAGAAGAACACTGATAGAGTGCAAACAATTGTCACCCCAACTGTCAAACATGGA 60
                                                                                  

consensus_2262#0      ---------GGAAAGTGCATTTAACGGGGCAACGAACTAAGATAGTTGTTAAGGTGCACA 51
consensus_2262#1      GAGTGTGGTGGAAANTGCATT-AACGGGGCAACGAACTAAGATAGTTGTTAAGGTGCACA 119
                               ***** ****** **************************************

consensus_2262#0      TGCCATGCGGAAAATCCCGAGCAAAAGCCATGGCGCTGGTTGCGTCAGTGAACGGTAAAT 111
consensus_2262#1      TGCCATTCGGAAATTCCCN-GCAAAAGCCATGGCGCTGGTTGCATCAGTGAATCGGTAAT 178
                      ****** ****** ****  *********************** ********  *  ***

consensus_2262#0      CTGCGCAAATATATTCTTCCGGTTGTGCAGTCCTGATCAGTACTCCTACTATTTTATGCC 171
consensus_2262#1      C----------------------------------------------------------- 179
                      *                                                           

consensus_2262#0      TTTATGCTTGCAGGGGTGGAGAGCATGCAGAGCATGCAGATAACGGGGGAGGACAAAGAC 231
consensus_2262#1      ------------------------------------------------------------
                                                                                  

consensus_2262#0      CGGCTGGAGGTGGTCGGCCGTGGTTTTGACCCTGTTCGCCTGGTGGCTCTCCTGCGCGAG 291
consensus_2262#1      ------------------------------------------------------------
                                                                                  

consensus_2262#0      AAATGTGGCCTCGCCGAGCTCTTGATGGTGGAGTTAGTTGAGAAAGAGAAGACACAGCTG 351
consensus_2262#1      ------------------------------------------------------------
                                                                                  

consensus_2262#0      GCTGGAGGAAAGAAAGGTGCATACAAGAAGCACCCTACCTACAATTTATCGCCGTTTGAC 411
consensus_2262#1      ------------------------------------------------------------
                                                                                  

consensus_2262#0      TATGTANAGTATCCACCTTCC 432
consensus_2262#1      ---------------------