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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2289#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1044 fasta sequence
[GTAGTTATATGAGAATAGTCCAAGGTAAGGGTGAGAACAAAGAACAGCTAGCTTGATACTACATTCGTACTAAAATATAGTTATTTCTAGTACTTGTCTCAAAATGAATCTATTTCTACACCTTTTTTTTAGGGAAGCTATATTTTTACACCTACCAACTTCTCTTAATCAATTATAACTATTCTCTATTTAATTTTTTTACCTACTTTCTTTTCTCAACCAATCACAAGAATCCTCCAATCATTTTCACCTACCCATGGAGTACCAAATGGAGGTTTCTGTTTTTTTTTTGCGCCAAAATTGTTTAAAGTTGATGCCTACTTCCATTTCAAGGTCCAGTTATAATTTTCGGGCCTAGCCCAAAATTCCCAAGCAACAAGACAACATCCAGCCTTTGTCTCAAATCTTCATCAACAAGGTTGGGCCTAATGTATATTTGTCCAAAACTTCCTCTAAATGCCTAACCACCGTTAATGGAGCAAGATTCCCACTAGCAGATGATATATGTTAATTAATTAAGTTTTTTTTTTCACCATTTATAGCAAAGATAGACAGTGGAAATACACAATTGTATATCTTAATTTACTCGATGGATAAACACGGAACAACTTGTAAAGTTTAAACTAGACGAATAATATTGTGAAGTGGGTATTATAATACCCATTTCATAATGTATTCAGAAGATCATTACTACACGCTGCAGTTCTTATAGTAATGTTTTTTGGTACATTATATATTTATTCTTCTGAATTTATTATGTTATACTCTCATTAAGTATTTCCATATGATCTTGAGCAGCTTGTGGGCGAGAGCGAGCAGCTGCGGATGAAGAAGCTCGAAGAGCTGAACAAAACGGTAGAGTCCCTCTACTAGACTTGGGCTTTTGGGGGCCCATGGCTGCCACCACAAAGAGCTTGTTTGCAGTGTGCAATTTCTTCTTTTTTTTTATGACACGAGGATGAGCCAAATTTGTGTGACCTCACATGTGTCGTCGCGTTTGATATAGCTGATGGGATCACGAGTTTATCTATTCTGTATGGTTCA]
[+] EMBL AK103078 [GTAGTTATATGAGAATAGTCCAAGGTAAGGGTGAGAACAAAGAACAGCTAGCTTGATACTACATTCGTACTAAAATATAGTTATTTCTAGTACTTGTCTCAAAATGAATCTATTTCTACACCTTTTTTTTAGGGAAGCTATATTTTTACACCTACCAACTTCTCTTAATCAATTATAACTATTCTCTATTTAATTTTTTTACCTACTTTCTTTTCTCAACCAATCACAAGAATCCTCCAATCATTTTCACCTACCCATGGAGTACCAAATGGAGGTTTCTGTTTTTTTTTTGCGCCAAAATTGTTTAAAGTTGATGCCTACTTCCATTTCAAGGTCCAGTTATAATTTTCGGGCCTAGCCCAAAATTCCCAAGCAACAAGACAACATCCAGCCTTTGTCTCAAATCTTCATCAACAAGGTTGGGCCTAATGTATATTTGTCCAAAACTTCCTCTAAATGCCTAACCACCGTTAATGGAGCAAGATTCCCACTAGCAGATGATATATGTTAATTAATTAAGTTTTTTTTTTCACCATTTATAGCAAAGATAGACAGTGGAAATACACAATTGTATATCTTAATTTACTCGATGGATAAACACGGAACAACTTGTAAAGTTTAAACTAGACGAATAATATTGTGAAGTGGGTATTATAATACCCATTTCATAATGTATTCAGAAGATCATTACTACACGCTGCAGTTCTTATAGTAATGTTTTTTGGTACATTATATATTTATTCTTCTGAATTTATTATGTTATACTCTCATTAAGTATTTCCATATGATCTTGAGCAGCTTGTGGGCGAGAGCGAGCAGCTGCGGATGAAGAAGCTCGAAGAGCTGAACAAAACGGTAGAGTCCCTCTACTAGACTTGGGCTTTTGGGGGCCCATGGCTGCCACCACAAAGAGCTTGTTTGCAGTGTGCAATTTCTTCTTTTTTTTTATGACACGAGGATGAGCCAAATTTGTGTGACCTCACATGTGTCGTCGCGTTTGATATAGCTGATGGGATCACGAGTTTATCTATTCTGTATGGTTCA]
consensusID : consensus_2289#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 887 fasta sequence
[TAGCTACTGCTAGTTCCTACACATTGCTCGCTGCGGTAAGGTTAGCATTGGTTGGTGAGAGAGAGAGAGAGAGAGAGAGGTTGCAGCTAGCAGCAGAGAAGCACCTGCAGAGGCGAGAGGCATGGAGTGCGGCGGCGGCGGCAGGGAGCAGCAGATGCAGATCGTGTGCGTGCGGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAGGATGGGTCGTCGGAGTGGGACCAGTCGTCGTCGCGGTCGGCGCTGTCGCTGTTCAAGGAGAAGGAGGAGGAGATCGAGCGGAAGAAGCTGGAGGTGCGGGAGAAGGTGTTCTCCATGCTCGGCCGGGTCGAGGAGGAGACCAAGCGCCTCGCCTTCATCCGCCAGGAGCTGGAGGTGATGTCGGATCCGACGCGGCGGGAGGTGGAGACGATACGGAAGCGCATCGACAAGGTGAACCGCCAGCTCAAGCCGCTCGGCAAGAACTGCCTCAAGAAGGAGAAGGAATACAAGGCGTGCCTAGAGGCTTACAACGAGAAGAGCAACGAGAAAGCAACGCTTGTGAACAGGTTGATGGAGCTTGTGGGCGAGAGCGAGCAGCTGCGGATGAAGAAGCTCGAAGAGCTGAACAAAACGGTAGAGTCCCTCTACTAGACTTGGGCTTTTGGGGGCCCATGGCTGCCACCACAAAGAGCTTGTTTGCAGTGTGCAATTTCTTCTTTTTTTTTTATGACACGAGGATGAGCCAAATTTGTGTGACCTCACATGTGTCGTCGCGTTTGATATAGCTGATGGGATCACGAGTTTATCTATTCTGTATGGTTCAGTTTAATTGCAACGTCATTGTCAAGAGAAATCCTTTTTTTTCCCAATTAGAGGGCTCGAAACAGGATTA]
[+] EMBL AK063839 [TAGCTACTGCTAGTTCCTACACATTGCTCGCTGCGGTAAGGTTAGCATTGGTTGGTGAGAGAGAGAGAGAGAGAGAGAGGTTGCAGCTAGCAGCAGAGAAGCACCTGCAGAGGCGAGAGGCATGGAGTGCGGCGGCGGCGGCAGGGAGCAGCAGATGCAGATCGTGTGCGTGCGGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAGGATGGGTCGTCGGAGTGGGACCAGTCGTCGTCGCGGTCGGCGCTGTCGCTGTTCAAGGAGAAGGAGGAGGAGATCGAGCGGAAGAAGCTGGAGGTGCGGGAGAAGGTGTTCTCCATGCTCGGCCGGGTCGAGGAGGAGACCAAGCGCCTCGCCTTCATCCGCCAGGAGCTGGAGGTGATGTCGGATCCGACGCGGCGGGAGGTGGAGACGATACGGAAGCGCATCGACAAGGTGAACCGCCAGCTCAAGCCGCTCGGCAAGAACTGCCTCAAGAAGGAGAAGGAATACAAGGCGTGCCTAGAGGCTTACAACGAGAAGAGCAACGAGAAAGCAACGCTTGTGAACAGGTTGATGGAGCTTGTGGGCGAGAGCGAGCAGCTGCGGATGAAGAAGCTCGAAGAGCTGAACAAAACGGTAGAGTCCCTCTACTAGACTTGGGCTTTTGGGGGCCCATGGCTGCCACCACAAAGAGCTTGTTTGCAGTGTGCAATTTCTTCTTTTTTTTTTATGACACGAGGATGAGCCAAATTTGTGTGACCTCACATGTGTCGTCGCGTTTGATATAGCTGATGGGATCACGAGTTTATCTATTCTGTATGGTTCAGTTTAATTGCAACGTCATTGTCAAGAGAAATCCTTTTTTTTCCCAATTAGAGGGCTCGAAACAGGATTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2289#0 GTAGTTATATGAGAATAGTCCAAGGTAAGGGTGAGAACAAAGAACAGCTAGCTTGATACT 60
consensus_2289#1 ------------------------------------------------------------
consensus_2289#0 ACATTCGTACTAAAATATAGTTATTTCTAGTACTTGTCTCAAAATGAATCTATTTCTACA 120
consensus_2289#1 ------------------------------------------------------------
consensus_2289#0 CCTTTTTTTTAGGGAAGCTATATTTTTACACCTACCAACTTCTCTTAATCAATTATAACT 180
consensus_2289#1 ------------------------------------------------------------
consensus_2289#0 ATTCTCTATTTAATTTTTTTACCTACTTTCTTTTCTCAACCAATCACAAGAATCCTCCAA 240
consensus_2289#1 -------------------TAGCTACTGCTAGTTCCTACACATTGCTCGCTGCGGTAAGG 41
** ***** *** * ** * *
consensus_2289#0 TCATTTTCACCTACCCATGGAGTACCAAATGGAGGTTTCTGTTTTTTTTTTGCGCCAAAA 300
consensus_2289#1 TTAGCATTGGTTGGTGAGAGAGAGAGAGAGAGAGAGAGGTTGCAGCTAGCAGCAG-AGAA 100
* * * * * *** * * *** * * ** * **
consensus_2289#0 TTGTTTAAAGTTGATGCCTACTTCCATTTCAAGGTC--CAGTTATAATTTTCGGGCCTAG 358
consensus_2289#1 GCACCTGCAGAGGCGAGAGGCATGGAGTGCGGCGGCGGCGGCAGGGAGCAGCAGATGCAG 160
* ** * * * * * * * * * * * * * **
consensus_2289#0 CCCAAAATTCCCAAGCAACAAGACAACATCCAGCCTTTGTCTCAAATCTTCATCAACAAG 418
consensus_2289#1 ATCG---TGTGCGTGCGGGGCGGCGGCGGC-GGCGGCGGCGGCGG--CGGCGGCGAGGAG 214
* * * ** * * * * ** * * * * * * **
consensus_2289#0 GTTGGGCCTAATGTATATTTGTCCAAAACTTCCTCTAAAT--GCCTAACCACCGTTAATG 476
consensus_2289#1 GATGGGTCGTCGGAGTG---GGACCAGTCGTCGTCGCGGTCGGCGCTGTCGCTGTTCAAG 271
* **** * * * * * * * ** ** * ** * * *** * *
consensus_2289#0 GAGCAAGATTCCCACTAGCAGATGATATATGTTAATTAATTAAGTTTTTTTTTTCACCAT 536
consensus_2289#1 GAGAAGGAGGAGGAG-ATCGAGCGGAAGAAGCTGGAGGTGCGGGAGAAGGTGTTCTCCAT 330
*** * ** * * * * * * * * * * *** ****
consensus_2289#0 TTATAGCAAAGATAGACAGTGGAAATACACAATTGTATATCTTAATTTACTCGATGGATA 596
consensus_2289#1 GCTCGGCCG-GGTCGAGGAGGAGACCAAGCGCCT---CGCCTTCATCCGCCAG------- 379
** * * ** * * * * * *** ** * *
consensus_2289#0 AACACGGAACAACTTGTAAAGTTTAAACTAGACGAATAATATTGTGAAGTGGGTATTATA 656
consensus_2289#1 ------GAGCTGGAGGTGATGTC-GGATCCGACGCGGCGGGAGGTGGAGACGATACGGAA 432
** * ** * ** * **** *** ** * ** *
consensus_2289#0 ATACCCATTTCATAATGT-ATTCAGAAGATCATTACTACACGCTGCAGTTCTTATAGTAA 715
consensus_2289#1 GCGCA---TCGACAAGGTGAACCGCCAGCTCAAGCCGCTCGGCAAGAACTGCCTCAAGAA 489
* * * ** ** * * ** *** * ** * * * **
consensus_2289#0 TGTTTTTTGGTACATTATATATTTATTCTTCTGAATTTATTATGTTATACTCTCATTAAG 775
consensus_2289#1 GGAGAAGGAATACAAGGCGTGCCTAGAGGCTTACAACGAGAAGAGCA-ACGAGAAAGCAA 548
* **** * ** * * * * * ** * *
consensus_2289#0 TATTTCCATATGATCTTGAGCAGCTTGTGGGCGAGAGCGAGCAGCTGCGGATGAAGAAGC 835
consensus_2289#1 CGCTTGTGAACAGGTTGATGGAGCTTGTGGGCGAGAGCGAGCAGCTGCGGATGAAGAAGC 608
** * * * ***************************************
consensus_2289#0 TCGAAGAGCTGAACAAAACGGTAGAGTCCCTCTACTAGACTTGGGCTTTTGGGGGCCCAT 895
consensus_2289#1 TCGAAGAGCTGAACAAAACGGTAGAGTCCCTCTACTAGACTTGGGCTTTTGGGGGCCCAT 668
************************************************************
consensus_2289#0 GGCTGCCACCACAAAGAGCTTGTTTGCAGTGTGCAATTTCTTCTTTTTTTTT-ATGACAC 954
consensus_2289#1 GGCTGCCACCACAAAGAGCTTGTTTGCAGTGTGCAATTTCTTCTTTTTTTTTTATGACAC 728
**************************************************** *******
consensus_2289#0 GAGGATGAGCCAAATTTGTGTGACCTCACATGTGTCGTCGCGTTTGATATAGCTGATGGG 1014
consensus_2289#1 GAGGATGAGCCAAATTTGTGTGACCTCACATGTGTCGTCGCGTTTGATATAGCTGATGGG 788
************************************************************
consensus_2289#0 ATCACGAGTTTATCTATTCTGTATGGTTCA------------------------------ 1044
consensus_2289#1 ATCACGAGTTTATCTATTCTGTATGGTTCAGTTTAATTGCAACGTCATTGTCAAGAGAAA 848
******************************
consensus_2289#0 ---------------------------------------
consensus_2289#1 TCCTTTTTTTTCCCAATTAGAGGGCTCGAAACAGGATTA 887
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||