cluster # 2293

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Oryza sativa
cluster # 2293 cluster # 2293 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2293#0 length = 761 sequences # 1

consensus_2293#1 length = 724 sequences # 1

consensusID : consensus_2293#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 761
fasta sequence

                              [GCGGCCCATGGCGGCGGTGGTGGCGGCGTGGAGGAGGGCGTGGGGGAGAGCTCGTCCCCGCCGCGTGACCCCGCGGCGGCGCCCGCGGCGTCGGGCGGGAGCGGCGGTGGCGGTGGCGGTGGCGCGGGAGGGCTTAACATCTGCAACCAGGTGTACGAGCGGCTCGTCGCGGAGGGGAACGAGGAGGCGGCCGCGCCGGACTTCCGCGCACAGCTCGAGGCCCATTTCATGCGGCTTCCACATAGCTATCAACTGGATATCAATGTCGACAAAGCTGAAGACGTCTTAGTCCATCAAAAGGTCTTGGCAGAAGCAAAAGATCCTGATAAGCGCCCTGCGTTCCATGTTCGTTTCTTGAGGAAATCGGAGTTGTCAAATTGACTCTAAACTTTGATCAAAGATTGAAGAAGTGGATCCGACATATGACTCTGACGCATCTGAAGATGGGGCTGATGATGGTGATGATCTCTCTGTAAGGCAGGACACATCATACGCACACATTCATGAGGTGGTTTTCTCCACTGTTGACAAGCCAAAGCTCCTTAGTCAGCTGTCTGCTTTGCTATCTGACATTGGATTGAACATCAGGGAAGCGCATGTTTTCTCGACATTTGACAACTATTCTCTTGATGTTTTTGTTGTTGATGGCTGGCCCATTGAGGACACTGATGGTTTGCACAAGGCACTGGAAGCGTCCATTTTAAGGAATGAGGGATCATGGTCAGGTTCATCTCACTCATCAGCTGCAGAAAGAACACTGC]

[+] EMBL CB652353             [GCGGCCCATGGCGGCGGTGGTGGCGGCGTGGAGGAGGGCGTGGGGGAGAGCTCGTCCCCGCCGCGTGACCCCGCGGCGGCGCCCGCGGCGTCGGGCGGGAGCGGCGGTGGCGGTGGCGGTGGCGCGGGAGGGCTTAACATCTGCAACCAGGTGTACGAGCGGCTCGTCGCGGAGGGGAACGAGGAGGCGGCCGCGCCGGACTTCCGCGCACAGCTCGAGGCCCATTTCATGCGGCTTCCACATAGCTATCAACTGGATATCAATGTCGACAAAGCTGAAGACGTCTTAGTCCATCAAAAGGTCTTGGCAGAAGCAAAAGATCCTGATAAGCGCCCTGCGTTCCATGTTCGTTTCTTGAGGAAATCGGAGTTGTCAAATTGACTCTAAACTTTGATCAAAGATTGAAGAAGTGGATCCGACATATGACTCTGACGCATCTGAAGATGGGGCTGATGATGGTGATGATCTCTCTGTAAGGCAGGACACATCATACGCACACATTCATGAGGTGGTTTTCTCCACTGTTGACAAGCCAAAGCTCCTTAGTCAGCTGTCTGCTTTGCTATCTGACATTGGATTGAACATCAGGGAAGCGCATGTTTTCTCGACATTTGACAACTATTCTCTTGATGTTTTTGTTGTTGATGGCTGGCCCATTGAGGACACTGATGGTTTGCACAAGGCACTGGAAGCGTCCATTTTAAGGAATGAGGGATCATGGTCAGGTTCATCTCACTCATCAGCTGCAGAAAGAACACTGC]




>consensus_2293#0
GCGGCCCATGGCGGCGGTGGTGGCGGCGTGGAGGAGGGCGTGGGGGAGAGCTCGTCCCCG
CCGCGTGACCCCGCGGCGGCGCCCGCGGCGTCGGGCGGGAGCGGCGGTGGCGGTGGCGGT
GGCGCGGGAGGGCTTAACATCTGCAACCAGGTGTACGAGCGGCTCGTCGCGGAGGGGAAC
GAGGAGGCGGCCGCGCCGGACTTCCGCGCACAGCTCGAGGCCCATTTCATGCGGCTTCCA
CATAGCTATCAACTGGATATCAATGTCGACAAAGCTGAAGACGTCTTAGTCCATCAAAAG
GTCTTGGCAGAAGCAAAAGATCCTGATAAGCGCCCTGCGTTCCATGTTCGTTTCTTGAGG
AAATCGGAGTTGTCAAATTGACTCTAAACTTTGATCAAAGATTGAAGAAGTGGATCCGAC
ATATGACTCTGACGCATCTGAAGATGGGGCTGATGATGGTGATGATCTCTCTGTAAGGCA
GGACACATCATACGCACACATTCATGAGGTGGTTTTCTCCACTGTTGACAAGCCAAAGCT
CCTTAGTCAGCTGTCTGCTTTGCTATCTGACATTGGATTGAACATCAGGGAAGCGCATGT
TTTCTCGACATTTGACAACTATTCTCTTGATGTTTTTGTTGTTGATGGCTGGCCCATTGA
GGACACTGATGGTTTGCACAAGGCACTGGAAGCGTCCATTTTAAGGAATGAGGGATCATG
GTCAGGTTCATCTCACTCATCAGCTGCAGAAAGAACACTGC

consensusID : consensus_2293#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 724
fasta sequence

                              [CGGCCCTTTGGCGGCGGTGGTGGCGGCGTGGAGGAGGGCGTGGGGGAGAGCTCGTCCCCGCCGCGTGACCCCGCGGCGGCGCCCGCGGCGTCGGGCGGGAGCGGCGGTGGCGGTGGCGGTGGCGCGGGAGGGCTTAACATCTGCAACCAGGTGTACGAGCGGCTCGTCGCGGAGGGGAACGAGGAGGCGGCCGCGCCGGACTTCCGCGCACAGCTCGAGGCCCATTTCATGCGGCTTCCACATAGCTATCAACTGGATATCAATGTCGACAAAGCTGAAGACGTCTTAGTCCATCAGAAGGTCTTGGCAGAAGCAAAAGATCCTGATAGGCGCCCTGCGTTCCATGTTCGTTTCTTGAGGATTGAAGAAGTGGATCCGACATATGACTCTGACGCATCTGAAGATGGGGCTGATGATGGTGATGATCTCTCTGTAAGGCAGGACACATCATACGCACACATTCATGAGGTGGTTTTCTCCACTGTTGACAAGCCAAAGCTCCTTAGTCAGCTGTCTGCTTTGCTATCTGACATTGGATTGAACATCAGGGAAGCGCATGTTTTCTCGACATTTGACAACTATTCTCTTGATGTTTTTGTTGTTGATGGCTGGCCCATTGAGGACACTGATGGTTTGCACAAGGCACTGGAAGCGTCCATTTTAAGGAATGAGGGATCATGGTCAGGTTCATCTCACTCATCAGCTGCAGAAAGAACACTGCCAT]

[+] EMBL CB676810             [CGGCCCTTTGGCGGCGGTGGTGGCGGCGTGGAGGAGGGCGTGGGGGAGAGCTCGTCCCCGCCGCGTGACCCCGCGGCGGCGCCCGCGGCGTCGGGCGGGAGCGGCGGTGGCGGTGGCGGTGGCGCGGGAGGGCTTAACATCTGCAACCAGGTGTACGAGCGGCTCGTCGCGGAGGGGAACGAGGAGGCGGCCGCGCCGGACTTCCGCGCACAGCTCGAGGCCCATTTCATGCGGCTTCCACATAGCTATCAACTGGATATCAATGTCGACAAAGCTGAAGACGTCTTAGTCCATCAGAAGGTCTTGGCAGAAGCAAAAGATCCTGATAGGCGCCCTGCGTTCCATGTTCGTTTCTTGAGGATTGAAGAAGTGGATCCGACATATGACTCTGACGCATCTGAAGATGGGGCTGATGATGGTGATGATCTCTCTGTAAGGCAGGACACATCATACGCACACATTCATGAGGTGGTTTTCTCCACTGTTGACAAGCCAAAGCTCCTTAGTCAGCTGTCTGCTTTGCTATCTGACATTGGATTGAACATCAGGGAAGCGCATGTTTTCTCGACATTTGACAACTATTCTCTTGATGTTTTTGTTGTTGATGGCTGGCCCATTGAGGACACTGATGGTTTGCACAAGGCACTGGAAGCGTCCATTTTAAGGAATGAGGGATCATGGTCAGGTTCATCTCACTCATCAGCTGCAGAAAGAACACTGCCAT]




>consensus_2293#1
CGGCCCTTTGGCGGCGGTGGTGGCGGCGTGGAGGAGGGCGTGGGGGAGAGCTCGTCCCCG
CCGCGTGACCCCGCGGCGGCGCCCGCGGCGTCGGGCGGGAGCGGCGGTGGCGGTGGCGGT
GGCGCGGGAGGGCTTAACATCTGCAACCAGGTGTACGAGCGGCTCGTCGCGGAGGGGAAC
GAGGAGGCGGCCGCGCCGGACTTCCGCGCACAGCTCGAGGCCCATTTCATGCGGCTTCCA
CATAGCTATCAACTGGATATCAATGTCGACAAAGCTGAAGACGTCTTAGTCCATCAGAAG
GTCTTGGCAGAAGCAAAAGATCCTGATAGGCGCCCTGCGTTCCATGTTCGTTTCTTGAGG
ATTGAAGAAGTGGATCCGACATATGACTCTGACGCATCTGAAGATGGGGCTGATGATGGT
GATGATCTCTCTGTAAGGCAGGACACATCATACGCACACATTCATGAGGTGGTTTTCTCC
ACTGTTGACAAGCCAAAGCTCCTTAGTCAGCTGTCTGCTTTGCTATCTGACATTGGATTG
AACATCAGGGAAGCGCATGTTTTCTCGACATTTGACAACTATTCTCTTGATGTTTTTGTT
GTTGATGGCTGGCCCATTGAGGACACTGATGGTTTGCACAAGGCACTGGAAGCGTCCATT
TTAAGGAATGAGGGATCATGGTCAGGTTCATCTCACTCATCAGCTGCAGAAAGAACACTG
CCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2293#0      GCGGCCCAT-GGCGGCGGTGGTGGCGGCGTGGAGGAGGGCGTGGGGGAGAGCTCGTCCCC 59
consensus_2293#1      -CGGCCCTTTGGCGGCGGTGGTGGCGGCGTGGAGGAGGGCGTGGGGGAGAGCTCGTCCCC 59
                       ****** * **************************************************

consensus_2293#0      GCCGCGTGACCCCGCGGCGGCGCCCGCGGCGTCGGGCGGGAGCGGCGGTGGCGGTGGCGG 119
consensus_2293#1      GCCGCGTGACCCCGCGGCGGCGCCCGCGGCGTCGGGCGGGAGCGGCGGTGGCGGTGGCGG 119
                      ************************************************************

consensus_2293#0      TGGCGCGGGAGGGCTTAACATCTGCAACCAGGTGTACGAGCGGCTCGTCGCGGAGGGGAA 179
consensus_2293#1      TGGCGCGGGAGGGCTTAACATCTGCAACCAGGTGTACGAGCGGCTCGTCGCGGAGGGGAA 179
                      ************************************************************

consensus_2293#0      CGAGGAGGCGGCCGCGCCGGACTTCCGCGCACAGCTCGAGGCCCATTTCATGCGGCTTCC 239
consensus_2293#1      CGAGGAGGCGGCCGCGCCGGACTTCCGCGCACAGCTCGAGGCCCATTTCATGCGGCTTCC 239
                      ************************************************************

consensus_2293#0      ACATAGCTATCAACTGGATATCAATGTCGACAAAGCTGAAGACGTCTTAGTCCATCAAAA 299
consensus_2293#1      ACATAGCTATCAACTGGATATCAATGTCGACAAAGCTGAAGACGTCTTAGTCCATCAGAA 299
                      ********************************************************* **

consensus_2293#0      GGTCTTGGCAGAAGCAAAAGATCCTGATAAGCGCCCTGCGTTCCATGTTCGTTTCTTGAG 359
consensus_2293#1      GGTCTTGGCAGAAGCAAAAGATCCTGATAGGCGCCCTGCGTTCCATGTTCGTTTCTTGAG 359
                      ***************************** ******************************

consensus_2293#0      GAAATCGGAGTTGTCAAATTGACTCTAAACTTTGATCAAAGATTGAAGAAGTGGATCCGA 419
consensus_2293#1      GA----------------------------------------TTGAAGAAGTGGATCCGA 379
                      **                                        ******************

consensus_2293#0      CATATGACTCTGACGCATCTGAAGATGGGGCTGATGATGGTGATGATCTCTCTGTAAGGC 479
consensus_2293#1      CATATGACTCTGACGCATCTGAAGATGGGGCTGATGATGGTGATGATCTCTCTGTAAGGC 439
                      ************************************************************

consensus_2293#0      AGGACACATCATACGCACACATTCATGAGGTGGTTTTCTCCACTGTTGACAAGCCAAAGC 539
consensus_2293#1      AGGACACATCATACGCACACATTCATGAGGTGGTTTTCTCCACTGTTGACAAGCCAAAGC 499
                      ************************************************************

consensus_2293#0      TCCTTAGTCAGCTGTCTGCTTTGCTATCTGACATTGGATTGAACATCAGGGAAGCGCATG 599
consensus_2293#1      TCCTTAGTCAGCTGTCTGCTTTGCTATCTGACATTGGATTGAACATCAGGGAAGCGCATG 559
                      ************************************************************

consensus_2293#0      TTTTCTCGACATTTGACAACTATTCTCTTGATGTTTTTGTTGTTGATGGCTGGCCCATTG 659
consensus_2293#1      TTTTCTCGACATTTGACAACTATTCTCTTGATGTTTTTGTTGTTGATGGCTGGCCCATTG 619
                      ************************************************************

consensus_2293#0      AGGACACTGATGGTTTGCACAAGGCACTGGAAGCGTCCATTTTAAGGAATGAGGGATCAT 719
consensus_2293#1      AGGACACTGATGGTTTGCACAAGGCACTGGAAGCGTCCATTTTAAGGAATGAGGGATCAT 679
                      ************************************************************

consensus_2293#0      GGTCAGGTTCATCTCACTCATCAGCTGCAGAAAGAACACTGC--- 761
consensus_2293#1      GGTCAGGTTCATCTCACTCATCAGCTGCAGAAAGAACACTGCCAT 724
                      ******************************************