cluster # 2340

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2340 cluster # 2340 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2340#0 length = 720 sequences # 1

consensus_2340#1 length = 366 sequences # 1

consensusID : consensus_2340#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 720
fasta sequence

                              [CGCCGTTGGATCCCGCTCACGCCTCGTCTCGCTCGACGTCTCCGAGGAGGCGAGGAGCTCGAGCTCGCCGCCTCGCCGGCCGGCCATTACTTTATCCGCGGCGGGTAGCTGGGGAGGGAGGGGAGGCGGCCGGCCACCAACCCATCGTCGTCTTGTGGTTTCCCATGCGGTTGCCGCCGCGGGCGCCGCTGCATTCGCGGGAGCGGGCGGGAACGGGATGGGGCTCGTCGGTGGCCTCCTCGGCTTCGGCGTCGGCCTCCCCCTCGGCATCGCCGTCGCCTACCTCGTCTACCTCCGCTTGTTCGCCCCTCGCCGCCGTCTCCAGGATCCTATTATTAGACCACTACGCGACTTGGATTCTGAGACATTACAGACAACTATACCAGATATTCCGTTGTGGGTGAAGTGTCCAGATTATGAACGGGTTGACTGGATTAACAAGTTTATTTTTGATATGGGGCCCTTCCTTGATAAGGCAATCTGCAACACAATAAGAAGTGTACTCAGACCAACATGTGATCAATATGTTGGACGATATGGAATAAAATCAATTGAATTTGGGCACTTAACACTTGGGGCTCTTCCTCCTACGTTCCAAGGAATTAAAGTTTATGAAATGAGAGAAAAAGAGTTGGTAATTGAACCTGTGATTCCGTGGGCCAGCATATCAAATGTAATTGTGAAAGTGAAGGTGCATTCTTTCCAAGTGTCGGCTCAGCT]

[+] EMBL CB657575             [CGCCGTTGGATCCCGCTCACGCCTCGTCTCGCTCGACGTCTCCGAGGAGGCGAGGAGCTCGAGCTCGCCGCCTCGCCGGCCGGCCATTACTTTATCCGCGGCGGGTAGCTGGGGAGGGAGGGGAGGCGGCCGGCCACCAACCCATCGTCGTCTTGTGGTTTCCCATGCGGTTGCCGCCGCGGGCGCCGCTGCATTCGCGGGAGCGGGCGGGAACGGGATGGGGCTCGTCGGTGGCCTCCTCGGCTTCGGCGTCGGCCTCCCCCTCGGCATCGCCGTCGCCTACCTCGTCTACCTCCGCTTGTTCGCCCCTCGCCGCCGTCTCCAGGATCCTATTATTAGACCACTACGCGACTTGGATTCTGAGACATTACAGACAACTATACCAGATATTCCGTTGTGGGTGAAGTGTCCAGATTATGAACGGGTTGACTGGATTAACAAGTTTATTTTTGATATGGGGCCCTTCCTTGATAAGGCAATCTGCAACACAATAAGAAGTGTACTCAGACCAACATGTGATCAATATGTTGGACGATATGGAATAAAATCAATTGAATTTGGGCACTTAACACTTGGGGCTCTTCCTCCTACGTTCCAAGGAATTAAAGTTTATGAAATGAGAGAAAAAGAGTTGGTAATTGAACCTGTGATTCCGTGGGCCAGCATATCAAATGTAATTGTGAAAGTGAAGGTGCATTCTTTCCAAGTGTCGGCTCAGCT]




>consensus_2340#0
CGCCGTTGGATCCCGCTCACGCCTCGTCTCGCTCGACGTCTCCGAGGAGGCGAGGAGCTC
GAGCTCGCCGCCTCGCCGGCCGGCCATTACTTTATCCGCGGCGGGTAGCTGGGGAGGGAG
GGGAGGCGGCCGGCCACCAACCCATCGTCGTCTTGTGGTTTCCCATGCGGTTGCCGCCGC
GGGCGCCGCTGCATTCGCGGGAGCGGGCGGGAACGGGATGGGGCTCGTCGGTGGCCTCCT
CGGCTTCGGCGTCGGCCTCCCCCTCGGCATCGCCGTCGCCTACCTCGTCTACCTCCGCTT
GTTCGCCCCTCGCCGCCGTCTCCAGGATCCTATTATTAGACCACTACGCGACTTGGATTC
TGAGACATTACAGACAACTATACCAGATATTCCGTTGTGGGTGAAGTGTCCAGATTATGA
ACGGGTTGACTGGATTAACAAGTTTATTTTTGATATGGGGCCCTTCCTTGATAAGGCAAT
CTGCAACACAATAAGAAGTGTACTCAGACCAACATGTGATCAATATGTTGGACGATATGG
AATAAAATCAATTGAATTTGGGCACTTAACACTTGGGGCTCTTCCTCCTACGTTCCAAGG
AATTAAAGTTTATGAAATGAGAGAAAAAGAGTTGGTAATTGAACCTGTGATTCCGTGGGC
CAGCATATCAAATGTAATTGTGAAAGTGAAGGTGCATTCTTTCCAAGTGTCGGCTCAGCT

consensusID : consensus_2340#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence

                              [TACGCGACTTGGATTCTGAGACATTACAGACAACTATACCAGATATTCCGTTGTGGGTGAAGTGTCCAGATTATGAACGGGTTGACTGGATTAACAAGTTTATTTTTGATATGTGGCCCTTCCTTGATAAGGAATTAAAGTTTATGAAATGAGAGAAAAAGAGTTGGTAATTGAACCTGTGATTCGGTGGGCCAGCATAGCAAATGTAATTGTGAAAGTGAAGGTGCATTCTTTCCAAGTGTCGGCTCAGCTTTTAGATTTACATATAATGCTGACACCACGTGTGACTCTGAAGCCTCTTGTGCCAAGCTTTCCCTGCTTTGCAAACTTGTGTGTTTAACTGATGGAGAAGCCACATATGGACTT]

[+] EMBL CF304573             [TACGCGACTTGGATTCTGAGACATTACAGACAACTATACCAGATATTCCGTTGTGGGTGAAGTGTCCAGATTATGAACGGGTTGACTGGATTAACAAGTTTATTTTTGATATGTGGCCCTTCCTTGATAAGGAATTAAAGTTTATGAAATGAGAGAAAAAGAGTTGGTAATTGAACCTGTGATTCGGTGGGCCAGCATAGCAAATGTAATTGTGAAAGTGAAGGTGCATTCTTTCCAAGTGTCGGCTCAGCTTTTAGATTTACATATAATGCTGACACCACGTGTGACTCTGAAGCCTCTTGTGCCAAGCTTTCCCTGCTTTGCAAACTTGTGTGTTTAACTGATGGAGAAGCCACATATGGACTT]




>consensus_2340#1
TACGCGACTTGGATTCTGAGACATTACAGACAACTATACCAGATATTCCGTTGTGGGTGA
AGTGTCCAGATTATGAACGGGTTGACTGGATTAACAAGTTTATTTTTGATATGTGGCCCT
TCCTTGATAAGGAATTAAAGTTTATGAAATGAGAGAAAAAGAGTTGGTAATTGAACCTGT
GATTCGGTGGGCCAGCATAGCAAATGTAATTGTGAAAGTGAAGGTGCATTCTTTCCAAGT
GTCGGCTCAGCTTTTAGATTTACATATAATGCTGACACCACGTGTGACTCTGAAGCCTCT
TGTGCCAAGCTTTCCCTGCTTTGCAAACTTGTGTGTTTAACTGATGGAGAAGCCACATAT
GGACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2340#0      CGCCGTTGGATCCCGCTCACGCCTCGTCTCGCTCGACGTCTCCGAGGAGGCGAGGAGCTC 60
consensus_2340#1      ------------------------------------------------------------
                                                                                  

consensus_2340#0      GAGCTCGCCGCCTCGCCGGCCGGCCATTACTTTATCCGCGGCGGGTAGCTGGGGAGGGAG 120
consensus_2340#1      ------------------------------------------------------------
                                                                                  

consensus_2340#0      GGGAGGCGGCCGGCCACCAACCCATCGTCGTCTTGTGGTTTCCCATGCGGTTGCCGCCGC 180
consensus_2340#1      ------------------------------------------------------------
                                                                                  

consensus_2340#0      GGGCGCCGCTGCATTCGCGGGAGCGGGCGGGAACGGGATGGGGCTCGTCGGTGGCCTCCT 240
consensus_2340#1      ------------------------------------------------------------
                                                                                  

consensus_2340#0      CGGCTTCGGCGTCGGCCTCCCCCTCGGCATCGCCGTCGCCTACCTCGTCTACCTCCGCTT 300
consensus_2340#1      ------------------------------------------------------------
                                                                                  

consensus_2340#0      GTTCGCCCCTCGCCGCCGTCTCCAGGATCCTATTATTAGACCACTACGCGACTTGGATTC 360
consensus_2340#1      --------------------------------------------TACGCGACTTGGATTC 16
                                                                  ****************

consensus_2340#0      TGAGACATTACAGACAACTATACCAGATATTCCGTTGTGGGTGAAGTGTCCAGATTATGA 420
consensus_2340#1      TGAGACATTACAGACAACTATACCAGATATTCCGTTGTGGGTGAAGTGTCCAGATTATGA 76
                      ************************************************************

consensus_2340#0      ACGGGTTGACTGGATTAACAAGTTTATTTTTGATATGGGGCCCTTCCTTGATAAGGCAAT 480
consensus_2340#1      ACGGGTTGACTGGATTAACAAGTTTATTTTTGATATGTGGCCCTTCCTTGATAAGGAATT 136
                      ************************************* ****************** * *

consensus_2340#0      CTGCAACACAATAAGAAGTGTACTCAGACCAACATGTGATC-AATATGTTGGACGATATG 539
consensus_2340#1      -----AAAGTTTATGAAATGAGAGAAAAAGAGTTGGTAATTGAACCTGTGATTCGGTGGG 191
                           * *   ** *** **     * *  *    ** **  **  ***    ** *  *

consensus_2340#0      GAATAAAATCAATTGAATTTGGGCACTTAACACTTGGGGCTCTTCCTCCTACGTTCCAAG 599
consensus_2340#1      CCAGCATAGCAAATGTAATTGTGAAAGTGA-AGGTGCATTCTTTCCAAGTGTCGGCTCAG 250
                        *  * * *** ** * *** * *  * * *  **      ****   *     *  **

consensus_2340#0      GAATTAAAGTT-TATGAAATGAGAGAAAAAGAGTTGGTAATTGAACCTGTGATTCCGTGG 658
consensus_2340#1      CTTTTAGATTTACATATAATGCTGACACCACGTGTGACTCTGAAGCCTCTTGTGCCAAGC 310
                         *** * **  **  ****     *  *    **    *  * *** *  * **  * 

consensus_2340#0      G---CCAGCATATCAAATGTAATTGTGAAAGTGAAGGTGCATTCTTTCCAAGTGTCGGCT 715
consensus_2340#1      TTTCCCTGCTTTGCAAACTTGTGTGTTTAACTGATGGAGAAG-----CCACATATGGACT 365
                          ** ** *  ****  *   ***  ** *** ** * *      ***  * * * **

consensus_2340#0      CAGCT 720
consensus_2340#1      T---- 366