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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2400#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1285 fasta sequence
[TCCATCGCGCGCGGAGGCCAAGCGCCTCCGGCGCCGCCGCCGCTTCCTCCCGGCGGTGCTGCCTCCAGGCGCCACCGACGCTTCCTCCCCACGGCGCTGCCCCAGGTGCCGCCTCTTCCTCCCCACGCTGCGCCGCCCTTCTTCGTGCCACCGCCGCCGCCTCTCCGCTTCGCAGCGCCGGCGCCGACTCCACCTCAATACGCCATCACCAGTCGCCCTAGCCCCCACGTCCACCTTCACAGCCGCCCTAGCCCCTTCCTCCGCCACCCGCACCAGCCACCCTAGCCCCCAGTCCCCCACCTCCGCCACCCCCACCTCCACCTCCACCACCCCACACCTCCGCTGCTTCCTCGAGCTCAGCCTCCCCTTACCCCTTCACCCCCAATCCCTTCCTAAAAAATCAGGGAAGTGTTCAAGAGCCTCTAAGCAAGTTATATGGGTATTGAATGATTGAAGACCACGGGTGTTCGCATGCAGCAAGACAACATCATTTGAAAGGAAGACATCAAGAATTAGCCCACCATGTGAAGAACAAGAACTTGCTATTGGGAGTCATGATAGTGATATTGAGGCTGACTGTGCTCATTTGCAAGAAGTGCTTTTCAATTACAATGAAAACATTGTGCACAGAAGAGTTGTACAAAGGGGAACTTCACGATGTGTTTCTGTCACTCCAAGAGGCCGCACAACCTCTTGCAATGAAGATGAAAGCCTTGTTGGCAAGGATGTTATACTCTATGCTGTCACAAGAAATGATGTCCCAGTAGCCAAGGCAACAATTGTCTCAACGAACCCAATAACAACAGTGGGAGGTCAAGCTCTTGGAGTCCAATACTATGAGGTGGTTGTGAATGTGGTGTTAAAGAGGGACACCGTGCTTCCTTGTCCATTTCGTATTAAAACTATGGCTGATGCGTAAATGCTGTCTATTGCATGGCCAAATAACAAAATCAGGGCAAACAAGAGGCCAGGTATCTCCCAATGCGGAGGTGGAGGTTCTGGAAGGACATAGAGGTGGACCTTGTCTTATGTTGACAACAAGCTATGGAGGATGACCTTGTTTTGGGGGCAAGACAAGGTCATCCTTTTGTAATGGAGTTTGCTACAGAGGCGAACTTGTTGGGAAATGCCAACATACTGCATGTAATGGAGTTTGCTTCAGGATAGATATGGTGGAACTTGGATGAAATGTAAATCTTTTGGACACCTGTTGTATCTATGCCACATGCGTACTGCATGCATGTATGCTTGAATTAATCTGTGAATGAATTAAAGTTAGTCACTA]
[+] EMBL AK072836 [TCCATCGCGCGCGGAGGCCAAGCGCCTCCGGCGCCGCCGCCGCTTCCTCCCGGCGGTGCTGCCTCCAGGCGCCACCGACGCTTCCTCCCCACGGCGCTGCCCCAGGTGCCGCCTCTTCCTCCCCACGCTGCGCCGCCCTTCTTCGTGCCACCGCCGCCGCCTCTCCGCTTCGCAGCGCCGGCGCCGACTCCACCTCAATACGCCATCACCAGTCGCCCTAGCCCCCACGTCCACCTTCACAGCCGCCCTAGCCCCTTCCTCCGCCACCCGCACCAGCCACCCTAGCCCCCAGTCCCCCACCTCCGCCACCCCCACCTCCACCTCCACCACCCCACACCTCCGCTGCTTCCTCGAGCTCAGCCTCCCCTTACCCCTTCACCCCCAATCCCTTCCTAAAAAATCAGGGAAGTGTTCAAGAGCCTCTAAGCAAGTTATATGGGTATTGAATGATTGAAGACCACGGGTGTTCGCATGCAGCAAGACAACATCATTTGAAAGGAAGACATCAAGAATTAGCCCACCATGTGAAGAACAAGAACTTGCTATTGGGAGTCATGATAGTGATATTGAGGCTGACTGTGCTCATTTGCAAGAAGTGCTTTTCAATTACAATGAAAACATTGTGCACAGAAGAGTTGTACAAAGGGGAACTTCACGATGTGTTTCTGTCACTCCAAGAGGCCGCACAACCTCTTGCAATGAAGATGAAAGCCTTGTTGGCAAGGATGTTATACTCTATGCTGTCACAAGAAATGATGTCCCAGTAGCCAAGGCAACAATTGTCTCAACGAACCCAATAACAACAGTGGGAGGTCAAGCTCTTGGAGTCCAATACTATGAGGTGGTTGTGAATGTGGTGTTAAAGAGGGACACCGTGCTTCCTTGTCCATTTCGTATTAAAACTATGGCTGATGCGTAAATGCTGTCTATTGCATGGCCAAATAACAAAATCAGGGCAAACAAGAGGCCAGGTATCTCCCAATGCGGAGGTGGAGGTTCTGGAAGGACATAGAGGTGGACCTTGTCTTATGTTGACAACAAGCTATGGAGGATGACCTTGTTTTGGGGGCAAGACAAGGTCATCCTTTTGTAATGGAGTTTGCTACAGAGGCGAACTTGTTGGGAAATGCCAACATACTGCATGTAATGGAGTTTGCTTCAGGATAGATATGGTGGAACTTGGATGAAATGTAAATCTTTTGGACACCTGTTGTATCTATGCCACATGCGTACTGCATGCATGTATGCTTGAATTAATCTGTGAATGAATTAAAGTTAGTCACTA]
consensusID : consensus_2400#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1066 fasta sequence
[CCCACGTCCACCTTCACAGCCGCCCTAGCCCCTTCCTCCGCCACCCGCACCAGCCACCCTAGCCCCCAGTCCCCCACCTCCGCCACCCCCACCTCCACCTCCACCACCCCACACCTCCGCTGCTTCCTCGAGCTCAGCCTCCCCTTACCCCTTCACCCCCAATCCCTTCCTAAAAAATCAGGGAAGTGTTCAAGAGCCTCTAAGCAAGTTATATGGGTATTGAATGATTGAAGACCACGGGTGTTCGCATGCAGCAAGACAACATCATTTGAAAGGAAGACATCAAGAATTGACTTTGGCTGTTTGTAGAGCCCACCATGTGAAGAACAAGAACTTGCTATTGGGAGTCATGATAGTGATATTGAGGCTGACTGTGCTCATTTGCAAGAAGTGCTTTTCAATTACAATGAAAACATTGTGCACAGAAGAGTTGTACAAAGGGGAACTTCACGATGTGTTTCTGTCACTCCAAGAGGCCGCACAACCTCTTGCAATGAAGATGGAAGCCTTGTTGGCAAGGATGTTATACTCTATGCTGTCACAAGAAATGATGTCCCAGTAGCCAAGGCAACAATTGTCTCAACGAACCCAATAACAACAGTGGGAGGTCAAGCTCTTGGAGTCCAATACTATGAGGTGGTTGTGAATGTGGTGTTAAAGAGGGACACCGTGCTTCCTTGTCCATTTCGTATTAAAACTATGGCTGATGCGTAAATGCTGTCTATTGCATGGCCAAATAACAAAATCAGGGCAAACAAGAGGCCAGGTATCTCCCAATGCGGAGGTGGAGGTTCTGGAAGGACATAGAGGTGGACCTTGTCTTATGTTGACAACAAGCTATGGAGGATGACCTTGTTTTGGGGGCAAGACAAGGTCATCCTTTTGTAATGGAGTTTGCTACAGAGGCGAACTTGTTGGGAAATGCCAACATACTGCATGTAATGGAGTTTGCTTCAGGATAGATATGGTGGAACTTGGATGAAATGTAAATCTTTTGGACACCTGTTGTATCTATGCCACATGCGTACTGCATGCATGTATGCTTGAATTAATCTGTGAATGAATT]
[+] EMBL AK066701 [CCCACGTCCACCTTCACAGCCGCCCTAGCCCCTTCCTCCGCCACCCGCACCAGCCACCCTAGCCCCCAGTCCCCCACCTCCGCCACCCCCACCTCCACCTCCACCACCCCACACCTCCGCTGCTTCCTCGAGCTCAGCCTCCCCTTACCCCTTCACCCCCAATCCCTTCCTAAAAAATCAGGGAAGTGTTCAAGAGCCTCTAAGCAAGTTATATGGGTATTGAATGATTGAAGACCACGGGTGTTCGCATGCAGCAAGACAACATCATTTGAAAGGAAGACATCAAGAATTGACTTTGGCTGTTTGTAGAGCCCACCATGTGAAGAACAAGAACTTGCTATTGGGAGTCATGATAGTGATATTGAGGCTGACTGTGCTCATTTGCAAGAAGTGCTTTTCAATTACAATGAAAACATTGTGCACAGAAGAGTTGTACAAAGGGGAACTTCACGATGTGTTTCTGTCACTCCAAGAGGCCGCACAACCTCTTGCAATGAAGATGGAAGCCTTGTTGGCAAGGATGTTATACTCTATGCTGTCACAAGAAATGATGTCCCAGTAGCCAAGGCAACAATTGTCTCAACGAACCCAATAACAACAGTGGGAGGTCAAGCTCTTGGAGTCCAATACTATGAGGTGGTTGTGAATGTGGTGTTAAAGAGGGACACCGTGCTTCCTTGTCCATTTCGTATTAAAACTATGGCTGATGCGTAAATGCTGTCTATTGCATGGCCAAATAACAAAATCAGGGCAAACAAGAGGCCAGGTATCTCCCAATGCGGAGGTGGAGGTTCTGGAAGGACATAGAGGTGGACCTTGTCTTATGTTGACAACAAGCTATGGAGGATGACCTTGTTTTGGGGGCAAGACAAGGTCATCCTTTTGTAATGGAGTTTGCTACAGAGGCGAACTTGTTGGGAAATGCCAACATACTGCATGTAATGGAGTTTGCTTCAGGATAGATATGGTGGAACTTGGATGAAATGTAAATCTTTTGGACACCTGTTGTATCTATGCCACATGCGTACTGCATGCATGTATGCTTGAATTAATCTGTGAATGAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2400#0 TCCATCGCGCGCGGAGGCCAAGCGCCTCCGGCGCCGCCGCCGCTTCCTCCCGGCGGTGCT 60
consensus_2400#1 ------------------------------------------------------------
consensus_2400#0 GCCTCCAGGCGCCACCGACGCTTCCTCCCCACGGCGCTGCCCCAGGTGCCGCCTCTTCCT 120
consensus_2400#1 ------------------------------------------------------------
consensus_2400#0 CCCCACGCTGCGCCGCCCTTCTTCGTGCCACCGCCGCCGCCTCTCCGCTTCGCAGCGCCG 180
consensus_2400#1 ------------------------------------------------------------
consensus_2400#0 GCGCCGACTCCACCTCAATACGCCATCACCAGTCGCCCTAGCCCCCACGTCCACCTTCAC 240
consensus_2400#1 -------------------------------------------CCCACGTCCACCTTCAC 17
*****************
consensus_2400#0 AGCCGCCCTAGCCCCTTCCTCCGCCACCCGCACCAGCCACCCTAGCCCCCAGTCCCCCAC 300
consensus_2400#1 AGCCGCCCTAGCCCCTTCCTCCGCCACCCGCACCAGCCACCCTAGCCCCCAGTCCCCCAC 77
************************************************************
consensus_2400#0 CTCCGCCACCCCCACCTCCACCTCCACCACCCCACACCTCCGCTGCTTCCTCGAGCTCAG 360
consensus_2400#1 CTCCGCCACCCCCACCTCCACCTCCACCACCCCACACCTCCGCTGCTTCCTCGAGCTCAG 137
************************************************************
consensus_2400#0 CCTCCCCTTACCCCTTCACCCCCAATCCCTTCCTAAAAAATCAGGGAAGTGTTCAAGAGC 420
consensus_2400#1 CCTCCCCTTACCCCTTCACCCCCAATCCCTTCCTAAAAAATCAGGGAAGTGTTCAAGAGC 197
************************************************************
consensus_2400#0 CTCTAAGCAAGTTATATGGGTATTGAATGATTGAAGACCACGGGTGTTCGCATGCAGCAA 480
consensus_2400#1 CTCTAAGCAAGTTATATGGGTATTGAATGATTGAAGACCACGGGTGTTCGCATGCAGCAA 257
************************************************************
consensus_2400#0 GACAACATCATTTGAAAGGAAGACATCAAGAATT------------------AGCCCACC 522
consensus_2400#1 GACAACATCATTTGAAAGGAAGACATCAAGAATTGACTTTGGCTGTTTGTAGAGCCCACC 317
********************************** ********
consensus_2400#0 ATGTGAAGAACAAGAACTTGCTATTGGGAGTCATGATAGTGATATTGAGGCTGACTGTGC 582
consensus_2400#1 ATGTGAAGAACAAGAACTTGCTATTGGGAGTCATGATAGTGATATTGAGGCTGACTGTGC 377
************************************************************
consensus_2400#0 TCATTTGCAAGAAGTGCTTTTCAATTACAATGAAAACATTGTGCACAGAAGAGTTGTACA 642
consensus_2400#1 TCATTTGCAAGAAGTGCTTTTCAATTACAATGAAAACATTGTGCACAGAAGAGTTGTACA 437
************************************************************
consensus_2400#0 AAGGGGAACTTCACGATGTGTTTCTGTCACTCCAAGAGGCCGCACAACCTCTTGCAATGA 702
consensus_2400#1 AAGGGGAACTTCACGATGTGTTTCTGTCACTCCAAGAGGCCGCACAACCTCTTGCAATGA 497
************************************************************
consensus_2400#0 AGATGAAAGCCTTGTTGGCAAGGATGTTATACTCTATGCTGTCACAAGAAATGATGTCCC 762
consensus_2400#1 AGATGGAAGCCTTGTTGGCAAGGATGTTATACTCTATGCTGTCACAAGAAATGATGTCCC 557
***** ******************************************************
consensus_2400#0 AGTAGCCAAGGCAACAATTGTCTCAACGAACCCAATAACAACAGTGGGAGGTCAAGCTCT 822
consensus_2400#1 AGTAGCCAAGGCAACAATTGTCTCAACGAACCCAATAACAACAGTGGGAGGTCAAGCTCT 617
************************************************************
consensus_2400#0 TGGAGTCCAATACTATGAGGTGGTTGTGAATGTGGTGTTAAAGAGGGACACCGTGCTTCC 882
consensus_2400#1 TGGAGTCCAATACTATGAGGTGGTTGTGAATGTGGTGTTAAAGAGGGACACCGTGCTTCC 677
************************************************************
consensus_2400#0 TTGTCCATTTCGTATTAAAACTATGGCTGATGCGTAAATGCTGTCTATTGCATGGCCAAA 942
consensus_2400#1 TTGTCCATTTCGTATTAAAACTATGGCTGATGCGTAAATGCTGTCTATTGCATGGCCAAA 737
************************************************************
consensus_2400#0 TAACAAAATCAGGGCAAACAAGAGGCCAGGTATCTCCCAATGCGGAGGTGGAGGTTCTGG 1002
consensus_2400#1 TAACAAAATCAGGGCAAACAAGAGGCCAGGTATCTCCCAATGCGGAGGTGGAGGTTCTGG 797
************************************************************
consensus_2400#0 AAGGACATAGAGGTGGACCTTGTCTTATGTTGACAACAAGCTATGGAGGATGACCTTGTT 1062
consensus_2400#1 AAGGACATAGAGGTGGACCTTGTCTTATGTTGACAACAAGCTATGGAGGATGACCTTGTT 857
************************************************************
consensus_2400#0 TTGGGGGCAAGACAAGGTCATCCTTTTGTAATGGAGTTTGCTACAGAGGCGAACTTGTTG 1122
consensus_2400#1 TTGGGGGCAAGACAAGGTCATCCTTTTGTAATGGAGTTTGCTACAGAGGCGAACTTGTTG 917
************************************************************
consensus_2400#0 GGAAATGCCAACATACTGCATGTAATGGAGTTTGCTTCAGGATAGATATGGTGGAACTTG 1182
consensus_2400#1 GGAAATGCCAACATACTGCATGTAATGGAGTTTGCTTCAGGATAGATATGGTGGAACTTG 977
************************************************************
consensus_2400#0 GATGAAATGTAAATCTTTTGGACACCTGTTGTATCTATGCCACATGCGTACTGCATGCAT 1242
consensus_2400#1 GATGAAATGTAAATCTTTTGGACACCTGTTGTATCTATGCCACATGCGTACTGCATGCAT 1037
************************************************************
consensus_2400#0 GTATGCTTGAATTAATCTGTGAATGAATTAAAGTTAGTCACTA 1285
consensus_2400#1 GTATGCTTGAATTAATCTGTGAATGAATT-------------- 1066
*****************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||