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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2427#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 938 fasta sequence
[GCCGTGCGAGGGGACTGTTGCGCAGCGGCAGCGACCACGACACGTCGTTGTTCCCTCTGCTCCCGCTGTCGGTGTCGACGAGAGCGAGCTGCCCAGCGGCCGTGAGCCCGTGACGGGAGCACCTCCTCCACACCGATCCTTCCCCTGTCATTGAGGGTGATCTGAACCTCACCCTCACCCGTCGCCTCAAGTGCATCGACACCCACCGTCCTGAGTACGACGACGCCCGTCATTAAGGTAGTGTTTGGTTGGAGGGATATTCCGGGATAGGATGGAATGATCCCCAAAACCAAGTGTTTGGTTGAGAGATTAGGAGGGATAGGATGGTTCCAAAAAGAGAATATTCCTCCAATATTCGGGACAATCTCATCCGCGAAAATCTAGCGGACGGCGCCATCCCACTTCGCACGCGCGCGGTAACCCTCTGGCTACCTTTTTTTTTTTCACCGCACCCCTTTCCTTTCTCCTTCGCTCACCGGCGGCGGGAGCACGCGAGCAAGGCAAGCCAGCAGCGGGAGGGCGCAAGCAATAGTGAGGGCGAGCCGACGACGGGAGCGTGCGAGCATGGGCGAGCCGACGACGTGAGGGCGCGAGCAAGGGCGAGACCAAGCTAGTGGCAGGGAGCACGCGAGCACGCGAGCATGGGCGAGCCGGCGGTGGGAGCACGCGTGCAGGGGTGAGCCAGCGGCGGCCACGGCGGTGTCCAACCAGCCTCGATCCGCCATCGGCCTCCAACGTCAGCAGCACGCGCGATCTTCCTTCTCCAATCCTCCCAGAATCCCGACGACAACATTGGATGGGGATTTTGTTTCAGATCTGTACATGTTCTTTCAGTAGACATTTTTTTTTATGTGAGCAAGAATTAGTTTGTGATGTGTGCAAGTAATTTGTGGTGAGATGATTAATTAGTGCTTGAGCATGATATGGCAACATATTCA]
[+] EMBL AK108667 [GCCGTGCGAGGGGACTGTTGCGCAGCGGCAGCGACCACGACACGTCGTTGTTCCCTCTGCTCCCGCTGTCGGTGTCGACGAGAGCGAGCTGCCCAGCGGCCGTGAGCCCGTGACGGGAGCACCTCCTCCACACCGATCCTTCCCCTGTCATTGAGGGTGATCTGAACCTCACCCTCACCCGTCGCCTCAAGTGCATCGACACCCACCGTCCTGAGTACGACGACGCCCGTCATTAAGGTAGTGTTTGGTTGGAGGGATATTCCGGGATAGGATGGAATGATCCCCAAAACCAAGTGTTTGGTTGAGAGATTAGGAGGGATAGGATGGTTCCAAAAAGAGAATATTCCTCCAATATTCGGGACAATCTCATCCGCGAAAATCTAGCGGACGGCGCCATCCCACTTCGCACGCGCGCGGTAACCCTCTGGCTACCTTTTTTTTTTTCACCGCACCCCTTTCCTTTCTCCTTCGCTCACCGGCGGCGGGAGCACGCGAGCAAGGCAAGCCAGCAGCGGGAGGGCGCAAGCAATAGTGAGGGCGAGCCGACGACGGGAGCGTGCGAGCATGGGCGAGCCGACGACGTGAGGGCGCGAGCAAGGGCGAGACCAAGCTAGTGGCAGGGAGCACGCGAGCACGCGAGCATGGGCGAGCCGGCGGTGGGAGCACGCGTGCAGGGGTGAGCCAGCGGCGGCCACGGCGGTGTCCAACCAGCCTCGATCCGCCATCGGCCTCCAACGTCAGCAGCACGCGCGATCTTCCTTCTCCAATCCTCCCAGAATCCCGACGACAACATTGGATGGGGATTTTGTTTCAGATCTGTACATGTTCTTTCAGTAGACATTTTTTTTTATGTGAGCAAGAATTAGTTTGTGATGTGTGCAAGTAATTTGTGGTGAGATGATTAATTAGTGCTTGAGCATGATATGGCAACATATTCA]
consensusID : consensus_2427#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence
[TCATTTGACAGGAGCACGCGAGCAGGGGTGAGCCGGCGGCGGCCACGGCGGTGTCCAACCAGCCTCCATCCGCCGTCGGCCTCCAATGTCAGCAGCATGCGTGATGTTCCTTCTCCAATCCTCCTAGAATCCCAACGACAGCATTGGATGGGGATTTCGTTTCAGATCTGTACATGTTCTTTCAGTAGATATTTTTTTCATGTGAGCAAGAATTAGTTTGTGATGTGTGCAAGTAATTTGTGATGAGATGATTAATTAGTGCTTGAGCATGATATGGCAACATATTTATCTTTTTGTTAAAAAAAAAA]
[+] EMBL BI802473 [TCATTTGACAGGAGCACGCGAGCAGGGGTGAGCCGGCGGCGGCCACGGCGGTGTCCAACCAGCCTCCATCCGCCGTCGGCCTCCAATGTCAGCAGCATGCGTGATGTTCCTTCTCCAATCCTCCTAGAATCCCAACGACAGCATTGGATGGGGATTTCGTTTCAGATCTGTACATGTTCTTTCAGTAGATATTTTTTTCATGTGAGCAAGAATTAGTTTGTGATGTGTGCAAGTAATTTGTGATGAGATGATTAATTAGTGCTTGAGCATGATATGGCAACATATTTATCTTTTTGTTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2427#0 GCCGTGCGAGGGGACTGTTGCGCAGCGGCAGCGACCACGACACGTCGTTGTTCCCTCTGC 60
consensus_2427#1 ------------------------------------------------------------
consensus_2427#0 TCCCGCTGTCGGTGTCGACGAGAGCGAGCTGCCCAGCGGCCGTGAGCCCGTGACGGGAGC 120
consensus_2427#1 ------------------------------------------------------------
consensus_2427#0 ACCTCCTCCACACCGATCCTTCCCCTGTCATTGAGGGTGATCTGAACCTCACCCTCACCC 180
consensus_2427#1 ------------------------------------------------------------
consensus_2427#0 GTCGCCTCAAGTGCATCGACACCCACCGTCCTGAGTACGACGACGCCCGTCATTAAGGTA 240
consensus_2427#1 ------------------------------------------------------------
consensus_2427#0 GTGTTTGGTTGGAGGGATATTCCGGGATAGGATGGAATGATCCCCAAAACCAAGTGTTTG 300
consensus_2427#1 ------------------------------------------------------------
consensus_2427#0 GTTGAGAGATTAGGAGGGATAGGATGGTTCCAAAAAGAGAATATTCCTCCAATATTCGGG 360
consensus_2427#1 ------------------------------------------------------------
consensus_2427#0 ACAATCTCATCCGCGAAAATCTAGCGGACGGCGCCATCCCACTTCGCACGCGCGCGGTAA 420
consensus_2427#1 ------------------------------------------------------------
consensus_2427#0 CCCTCTGGCTACCTTTTTTTTTTTCACCGCACCCCTTTCCTTTCTCCTTCGCTCACCGGC 480
consensus_2427#1 ------------------------------------------------------------
consensus_2427#0 GGCGGGAGCACGCGAGCAAGGCAAGCCAGCAGCGGGAGGGCGCAAGCAATAGTGAGGGCG 540
consensus_2427#1 ------------------------------------------------------------
consensus_2427#0 AGCCGACGACGGGAGCGTGCGAGCATGGGCGAGCCGACGACGTGAGGGCGCGAGCAAGGG 600
consensus_2427#1 ------------------------------------------------------------
consensus_2427#0 CGAGACCAAGCTAGTGGCAGGGAGCACGCGAGCACGCGAGCATGGGCGAGCCGGCGGTGG 660
consensus_2427#1 -------------------------------------------------TCATTTGACAG 11
* * *
consensus_2427#0 GAGCACGCGTGCAGGGGTGAGCCAGCGGCGGCCACGGCGGTGTCCAACCAGCCTCGATCC 720
consensus_2427#1 GAGCACGCGAGCAGGGGTGAGCCGGCGGCGGCCACGGCGGTGTCCAACCAGCCTCCATCC 71
********* ************* ******************************* ****
consensus_2427#0 GCCATCGGCCTCCAACGTCAGCAGCACGCGCGATCTTCCTTCTCCAATCCTCCCAGAATC 780
consensus_2427#1 GCCGTCGGCCTCCAATGTCAGCAGCATGCGTGATGTTCCTTCTCCAATCCTCCTAGAATC 131
*** *********** ********** *** *** ****************** ******
consensus_2427#0 CCGACGACAACATTGGATGGGGATTTTGTTTCAGATCTGTACATGTTCTTTCAGTAGACA 840
consensus_2427#1 CCAACGACAGCATTGGATGGGGATTTCGTTTCAGATCTGTACATGTTCTTTCAGTAGATA 191
** ****** **************** ******************************* *
consensus_2427#0 TTTTTTTTTATGTGAGCAAGAATTAGTTTGTGATGTGTGCAAGTAATTTGTGGTGAGATG 900
consensus_2427#1 TTTTTTTC-ATGTGAGCAAGAATTAGTTTGTGATGTGTGCAAGTAATTTGTGATGAGATG 250
******* ******************************************* *******
consensus_2427#0 ATTAATTAGTGCTTGAGCATGATATGGCAACATATTCA-------------------- 938
consensus_2427#1 ATTAATTAGTGCTTGAGCATGATATGGCAACATATTTATCTTTTTGTTAAAAAAAAAA 308
************************************ *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||