|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2641#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1721 fasta sequence
[CCAAACAAAAAAACCAAATCGCCGAGCAGCTTCGCGGCGACGCACCACGTCGGCCGGCCGCCACCGCCGGAGAGGGAGGGCCTCCCCGACCCTCCCCGCCAAGAAGGATCCTATGGCGGCGGGGGCGCACGCGTCGCGCGCTTCGGCTCCGATCATTGCAGGTCTCACAGGTGCTCTTCGAGCAGCATATAAAGGATTTTCTCCTCAGTTATGCAACTTCCATGCGTCAGTAAATAATGGACTTCTCCACAGAAGGAAAATACAACTCCATTTTATATGCTCTTTTCGCTCCATACAAGCAAGATATAACCATTCGTCAGCTGTTGCACCTAAGGACTATTGCGAAACTTACATCCAGTTTCTAAGAGATAAACAGATAGTTCCTGATTCAGATCCTCCAAGTGCTAAGGATGTGGACCTACTTTACCGGTTTATTGATCAGAGTAAAAAACTCATGGTGTTAACTGGAGCAGGAATGAGCACTGAATCAGGAATTCCTGATTATAGGAGCCCTAATGGTGCTTACAGTTCTGGTTTTAAACCACTTACTCATCAGGAGTTTGTTCGTTCTATTCGAGCCCGAAGGCGGTACTGGGCTAGGAGCTATGCTGGATGGAGAAGGTTCAGGAGAGCACAACCAAACTCAGCCCATTATGCTCTTGCATCACTGGAGAGAATTGGCCGGGTACACTCAATGGTTACTCAAAACGTGGATAGGTTGCATCATCGTGCTGGGAGTAAGCCAGTTGAATTGCATGGAAGTGTGTATGAGGTAGCATGTTTAGACTGTGGTACATCCATTGACCGAGAATCATTCCAGGAGCAGGTCAAGGACCTCAACACAAAGTGGGCTCTAGCTATTGACAGTTTGGAAGTAGGACAACCGGGCTCAGACAAAAGTTTCGGAATGCAGCAGCGACCTGATGGTGATATTGAGATTGATGAGAAGTTCTGGGAGCAAGATTTTGATATTCCTAGTTGCAACCAATGTGGTGGAGTGCTGAAACCTGATGTTGTGATGTTTGGTGATAATGTTCCTGAAGAGAGAGCTGAAAGCACTAAGGAGGCTGCAAGAAATTGTGATGCTCTTCTAGTGGTTGGTTCAGCACTAATGACAATGTCTGCTTTTAGGCTCGCAAGGCTTGCACATGAAGCGAATGCTCCAATTGCGGCGATCACCATTGGTGAGACCAGGGCTGATAGTATTTTATCCTTGAAAATTAATGCAAGATGTGGGGAGATACTGCCCAGAATACTTCAGATGGGAAGTCTAGCTGTACCAAACGTAAGTTAAGCTGGTGCTGCGCAGTCATCTTTGTCGGAAACCATGTTTCCATGTAAGAACAATTCTTTGGAGAACAAACAAGTCACAAGGGAAGACGAAACAATGAAAGAAACTTTTAGCAACTAATTAAGTTCAGTTCAACTGGGCAGAATATCATCTCCATCCTGTTTGCATGAGATGAGGGAGTTAACCTTGTTAACCCTGTTGTTGTAAGTGTGTAAACCTTAACCTTGTTAACCCTGTTGTTGTAAGTGTGTAAACCTTTTTCAGTGACAATTCATTCAAATGTTTCCAAAGATATGGATATCCCGAACTGATCAGCACATTGAAGAAGTACAATATGCTTTGATAGTTCCTTGTAATGTGTCATTAAGCAGAAGTTGAAAAACGTTCTAGCTGGTCCGGATATTTGGATTCATGTAGTCTATTGTGCTCT]
[+] EMBL AK067069 [CCAAACAAAAAAACCAAATCGCCGAGCAGCTTCGCGGCGACGCACCACGTCGGCCGGCCGCCACCGCCGGAGAGGGAGGGCCTCCCCGACCCTCCCCGCCAAGAAGGATCCTATGGCGGCGGGGGCGCACGCGTCGCGCGCTTCGGCTCCGATCATTGCAGGTCTCACAGGTGCTCTTCGAGCAGCATATAAAGGATTTTCTCCTCAGTTATGCAACTTCCATGCGTCAGTAAATAATGGACTTCTCCACAGAAGGAAAATACAACTCCATTTTATATGCTCTTTTCGCTCCATACAAGCAAGATATAACCATTCGTCAGCTGTTGCACCTAAGGACTATTGCGAAACTTACATCCAGTTTCTAAGAGATAAACAGATAGTTCCTGATTCAGATCCTCCAAGTGCTAAGGATGTGGACCTACTTTACCGGTTTATTGATCAGAGTAAAAAACTCATGGTGTTAACTGGAGCAGGAATGAGCACTGAATCAGGAATTCCTGATTATAGGAGCCCTAATGGTGCTTACAGTTCTGGTTTTAAACCACTTACTCATCAGGAGTTTGTTCGTTCTATTCGAGCCCGAAGGCGGTACTGGGCTAGGAGCTATGCTGGATGGAGAAGGTTCAGGAGAGCACAACCAAACTCAGCCCATTATGCTCTTGCATCACTGGAGAGAATTGGCCGGGTACACTCAATGGTTACTCAAAACGTGGATAGGTTGCATCATCGTGCTGGGAGTAAGCCAGTTGAATTGCATGGAAGTGTGTATGAGGTAGCATGTTTAGACTGTGGTACATCCATTGACCGAGAATCATTCCAGGAGCAGGTCAAGGACCTCAACACAAAGTGGGCTCTAGCTATTGACAGTTTGGAAGTAGGACAACCGGGCTCAGACAAAAGTTTCGGAATGCAGCAGCGACCTGATGGTGATATTGAGATTGATGAGAAGTTCTGGGAGCAAGATTTTGATATTCCTAGTTGCAACCAATGTGGTGGAGTGCTGAAACCTGATGTTGTGATGTTTGGTGATAATGTTCCTGAAGAGAGAGCTGAAAGCACTAAGGAGGCTGCAAGAAATTGTGATGCTCTTCTAGTGGTTGGTTCAGCACTAATGACAATGTCTGCTTTTAGGCTCGCAAGGCTTGCACATGAAGCGAATGCTCCAATTGCGGCGATCACCATTGGTGAGACCAGGGCTGATAGTATTTTATCCTTGAAAATTAATGCAAGATGTGGGGAGATACTGCCCAGAATACTTCAGATGGGAAGTCTAGCTGTACCAAACGTAAGTTAAGCTGGTGCTGCGCAGTCATCTTTGTCGGAAACCATGTTTCCATGTAAGAACAATTCTTTGGAGAACAAACAAGTCACAAGGGAAGACGAAACAATGAAAGAAACTTTTAGCAACTAATTAAGTTCAGTTCAACTGGGCAGAATATCATCTCCATCCTGTTTGCATGAGATGAGGGAGTTAACCTTGTTAACCCTGTTGTTGTAAGTGTGTAAACCTTAACCTTGTTAACCCTGTTGTTGTAAGTGTGTAAACCTTTTTCAGTGACAATTCATTCAAATGTTTCCAAAGATATGGATATCCCGAACTGATCAGCACATTGAAGAAGTACAATATGCTTTGATAGTTCCTTGTAATGTGTCATTAAGCAGAAGTTGAAAAACGTTCTAGCTGGTCCGGATATTTGGATTCATGTAGTCTATTGTGCTCT]
consensusID : consensus_2641#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence
[GAACCCTGATGTTGTGATGTTGGGTGATATGTTCNTAAAGAGAGAGCTAAAGCACTAAGGAGGCTGCAAGAAATTGGATGGCTCTTCTAGTGGTTGGTTCAGCACTAATGACAATGTGTGCTTTAGGCTCGCAAGGCTTGCACATGAAGCGAATGCTCCAATTGCAGCGATCACCATTGGTGAGACCAGGGCTGATAGTATTTTGTCCTTGAAAATTAATGCAAGATGTGGGGAGATACTGCCCAGAATACTTCAGATGGGAAGTCTATCTGTACCAAATGTGAGTTAAGCATGGTGCTGCGCAGTCATCTTTGTTGGAAACCATGTTCTCATGTAAGAACAATCTTTGGAGAACAAGTCCCTAGGGAAGATGAAACAATGAAAGAAACTTTTAGCTAGACTAATTTTGTTCAGTTCAACTGGACAGAATATCATTGCCATCCTGTTTGCATGAGATGAGGGCGTTAACCTTGTTAACCCTGTGTGTTGTAAGTGTGTAAACCTTTTTCAGATTTTCAGTGACAATTCGTTCGAATGTACCCAAAGATATGGATATCCCGAGCTGATCAGCCCATTGAAGAAGTACAATATGCTTTGGTAGTTCCTTGTAATGTATCATTAAGCAGAAGTTGAAAAACGTTCTAGCTGGTTCGGATAAAATAAAAAAAAAAAAAAAA]
[-] EMBL CA763235 [GAACCCTGATGTTGTGATGTTGGGTGATATGTTCNTAAAGAGAGAGCTAAAGCACTAAGGAGGCTGCAAGAAATTGGATGGCTCTTCTAGTGGTTGGTTCAGCACTAATGACAATGTGTGCTTTAGGCTCGCAAGGCTTGCACATGAAGCGAATGCTCCAATTGCAGCGATCACCATTGGTGAGACCAGGGCTGATAGTATTTTGTCCTTGAAAATTAATGCAAGATGTGGGGAGATACTGCCCAGAATACTTCAGATGGGAAGTCTATCTGTACCAAATGTGAGTTAAGCATGGTGCTGCGCAGTCATCTTTGTTGGAAACCATGTTCTCATGTAAGAACAATCTTTGGAGAACAAGTCCCTAGGGAAGATGAAACAATGAAAGAAACTTTTAGCTAGACTAATTTTGTTCAGTTCAACTGGACAGAATATCATTGCCATCCTGTTTGCATGAGATGAGGGCGTTAACCTTGTTAACCCTGTGTGTTGTAAGTGTGTAAACCTTTTTCAGATTTTCAGTGACAATTCGTTCGAATGTACCCAAAGATATGGATATCCCGAGCTGATCAGCCCATTGAAGAAGTACAATATGCTTTGGTAGTTCCTTGTAATGTATCATTAAGCAGAAGTTGAAAAACGTTCTAGCTGGTTCGGATAAAATAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2641#0 CCAAACAAAAAAACCAAATCGCCGAGCAGCTTCGCGGCGACGCACCACGTCGGCCGGCCG 60
consensus_2641#1 ------------------------------------------------------------
consensus_2641#0 CCACCGCCGGAGAGGGAGGGCCTCCCCGACCCTCCCCGCCAAGAAGGATCCTATGGCGGC 120
consensus_2641#1 ------------------------------------------------------------
consensus_2641#0 GGGGGCGCACGCGTCGCGCGCTTCGGCTCCGATCATTGCAGGTCTCACAGGTGCTCTTCG 180
consensus_2641#1 ------------------------------------------------------------
consensus_2641#0 AGCAGCATATAAAGGATTTTCTCCTCAGTTATGCAACTTCCATGCGTCAGTAAATAATGG 240
consensus_2641#1 ------------------------------------------------------------
consensus_2641#0 ACTTCTCCACAGAAGGAAAATACAACTCCATTTTATATGCTCTTTTCGCTCCATACAAGC 300
consensus_2641#1 ------------------------------------------------------------
consensus_2641#0 AAGATATAACCATTCGTCAGCTGTTGCACCTAAGGACTATTGCGAAACTTACATCCAGTT 360
consensus_2641#1 ------------------------------------------------------------
consensus_2641#0 TCTAAGAGATAAACAGATAGTTCCTGATTCAGATCCTCCAAGTGCTAAGGATGTGGACCT 420
consensus_2641#1 ------------------------------------------------------------
consensus_2641#0 ACTTTACCGGTTTATTGATCAGAGTAAAAAACTCATGGTGTTAACTGGAGCAGGAATGAG 480
consensus_2641#1 ------------------------------------------------------------
consensus_2641#0 CACTGAATCAGGAATTCCTGATTATAGGAGCCCTAATGGTGCTTACAGTTCTGGTTTTAA 540
consensus_2641#1 ------------------------------------------------------------
consensus_2641#0 ACCACTTACTCATCAGGAGTTTGTTCGTTCTATTCGAGCCCGAAGGCGGTACTGGGCTAG 600
consensus_2641#1 ------------------------------------------------------------
consensus_2641#0 GAGCTATGCTGGATGGAGAAGGTTCAGGAGAGCACAACCAAACTCAGCCCATTATGCTCT 660
consensus_2641#1 ------------------------------------------------------------
consensus_2641#0 TGCATCACTGGAGAGAATTGGCCGGGTACACTCAATGGTTACTCAAAACGTGGATAGGTT 720
consensus_2641#1 ------------------------------------------------------------
consensus_2641#0 GCATCATCGTGCTGGGAGTAAGCCAGTTGAATTGCATGGAAGTGTGTATGAGGTAGCATG 780
consensus_2641#1 ------------------------------------------------------------
consensus_2641#0 TTTAGACTGTGGTACATCCATTGACCGAGAATCATTCCAGGAGCAGGTCAAGGACCTCAA 840
consensus_2641#1 ------------------------------------------------------------
consensus_2641#0 CACAAAGTGGGCTCTAGCTATTGACAGTTTGGAAGTAGGACAACCGGGCTCAGACAAAAG 900
consensus_2641#1 ------------------------------------------------------------
consensus_2641#0 TTTCGGAATGCAGCAGCGACCTGATGGTGATATTGAGATTGATGAGAAGTTCTGGGAGCA 960
consensus_2641#1 ------------------------------------------------------------
consensus_2641#0 AGATTTTGATATTCCTAGTTGCAACCAATGTGGTGGAGTGCTGAAACCTGATGTTGTGAT 1020
consensus_2641#1 ------------------------------------------GAACCCTGATGTTGTGAT 18
*** **************
consensus_2641#0 GTTTGGTGATAATGTTCCTGAAGAGAGAGCTGAAAGCACTAAGGAGGCTGCAAGAAATTG 1080
consensus_2641#1 GTTGGGTGATA-TGTTCNTAAAGAGAGAGCT-AAAGCACTAAGGAGGCTGCAAGAAATTG 76
*** ******* ***** * *********** ****************************
consensus_2641#0 TGATGCTCTTCTAGTGGTTGGTTCAGCACTAATGACAATGTCTGCTTTTAGGCTCGCAAG 1140
consensus_2641#1 GATGGCTCTTCTAGTGGTTGGTTCAGCACTAATGACAATGTGTGCTTT-AGGCTCGCAAG 135
************************************* ****** ***********
consensus_2641#0 GCTTGCACATGAAGCGAATGCTCCAATTGCGGCGATCACCATTGGTGAGACCAGGGCTGA 1200
consensus_2641#1 GCTTGCACATGAAGCGAATGCTCCAATTGCAGCGATCACCATTGGTGAGACCAGGGCTGA 195
****************************** *****************************
consensus_2641#0 TAGTATTTTATCCTTGAAAATTAATGCAAGATGTGGGGAGATACTGCCCAGAATACTTCA 1260
consensus_2641#1 TAGTATTTTGTCCTTGAAAATTAATGCAAGATGTGGGGAGATACTGCCCAGAATACTTCA 255
********* **************************************************
consensus_2641#0 GATGGGAAGTCTAGCTGTACCAAACGTAAGTTAAGC-TGGTGCTGCGCAGTCATCTTTGT 1319
consensus_2641#1 GATGGGAAGTCTATCTGTACCAAATGTGAGTTAAGCATGGTGCTGCGCAGTCATCTTTGT 315
************* ********** ** ******** ***********************
consensus_2641#0 CGGAAACCATGTTTCCATGTAAGAACAATTCTTTGGAGAACAAACAAGTCACAAGGGAAG 1379
consensus_2641#1 TGGAAACCATGTTCTCATGTAAGAACAAT-CTTTGGAGAA----CAAGTCCCTAGGGAAG 370
************ ************** ********** ****** * *******
consensus_2641#0 ACGAAACAATGAAAGAAACTTTTAGC--AACTAATTAAGTTCAGTTCAACTGGGCAGAAT 1437
consensus_2641#1 ATGAAACAATGAAAGAAACTTTTAGCTAGACTAATTTTGTTCAGTTCAACTGGACAGAAT 430
* ************************ ******* *************** ******
consensus_2641#0 ATCATCTCCATCCTGTTTGCATGAGATGAGGGAGTTAACCTTGTTAACCCTGT-TGTTGT 1496
consensus_2641#1 ATCATTGCCATCCTGTTTGCATGAGATGAGGGCGTTAACCTTGTTAACCCTGTGTGTTGT 490
***** ************************* ******************** ******
consensus_2641#0 AAGTGTGTAAACCTTAACCTTGTTAACCCTGTTGTTGTAAGTGTGTAAACCTTTTTCAGT 1556
consensus_2641#1 AAGTGTGTAAACCTT-------------------TTTCAGAT-----------TTTCAGT 520
*************** ** * * *******
consensus_2641#0 GACAATTCATTCAAATGTTTCCAAAGATATGGATATCCCGAACTGATCAGCACATTGAAG 1616
consensus_2641#1 GACAATTCGTTCGAATGTACCCAAAGATATGGATATCCCGAGCTGATCAGCCCATTGAAG 580
******** *** ***** ********************* ********* ********
consensus_2641#0 AAGTACAATATGCTTTGATAGTTCCTTGTAATGTGTCATTAAGCAGAAGTTGAAAAACGT 1676
consensus_2641#1 AAGTACAATATGCTTTGGTAGTTCCTTGTAATGTATCATTAAGCAGAAGTTGAAAAACGT 640
***************** **************** *************************
consensus_2641#0 TCTAGCTGGTCCGGATATTTGGATTCATGTAGTCTATTGTGCTCT 1721
consensus_2641#1 TCTAGCTGGTTCGGATAAAATAAAAAAAAAAAAAAAA-------- 677
********** ****** * * * *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||