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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2646#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1481 fasta sequence
[CCCAAACAAGGCCCAAAAGGTTTCTGCTTTCAGCCTTCTTCATGCCAAAACCCCAATCCGGCCGGCGACTCTCCGACATCCCGGCCGGCGACCATGGCGGCGGCGGCGGCGGAGGTAGCAGCAGCGGGAGGAGGAGGAGAGATGGTGGTCGTCCGCCTGCCTCCCCTTTCCCAGGACGACCCCCTCTTCCAAGACAAGAAGAGGATATTGGACAGTAGAAACTTATCCTGTCTATTTCAAGTTCCAAACTCATGTTCTGCTGCTGATGCCTTCAAAGTACTGGATAGGATAATCCAAGCTGCTAGGATAGCTCATATGGATGAGCTTGAGCTTTATTTTACTGGAGACGATGATTTCGGGCCATTATCTACAAGGAATGAACTTGAATCTCTAAATTTGTTGCTCAAAATTTTGAACACGTTGCTTCTGACTGCCAATGTTGGTGCCATGGGAGTTTTGCAAGTCCTACGTGATGAAATACTTATTAGGCTCAGATCTCTTGAGTTGGAAGACAATGACCAAATGGTAGTTCAAATACGAAACCAGAACATGGAAGATTCTCTTCTGAAATGGGGGGAGCAACATGGTGTTAAAACTAAATTGCAAATAGCATTTTTTGAAGGAGCTGGGAGAGGAATGGTAGCTTCTGAAAACATAGATGTGGGGGATATTGCACTTGAAATTCCAGAGTCTTCTATCATATCTGAGGAACTTCTCTGCCAGTCTGGCATGTTTCTTGCATTAAAAGATTTAGATAGCATCACCACTGAGACTATGCTATTGTTGTGGAGCATCAGAGAGCGGTACAATCCATCTTCAAAGTTTAAGATATACTTCGAGGCACTCCCAGCAAATTTCAATACAGGGCTGAGTTTTGGAATTGATGCACTTGCTGCATTGGAAGGAACCCTTCTTTTTGATGAGTTAATGCAAGCTAGGCAGCATTTGCGCCAGCAGTATGATGAGTTATTTCCAATGCTGTGCATAAAGTTTCCTGATATATTCAAACAAGACGTGTATACCTGGGACAATTTTCTATGGGCATGTGAATTATGGTATTCTAACAGTATGATGGTTGTATTAAGTAGTGGGAAATTAACAACTTGCTTGATTCCTATTGCCGGACTTCTGAACCACTCGGTTTCTCCTCACATTCTTAACTATGGTCGGGTAGATAAAGTTACGAAATCTTTGAAATTTCCTCTGTCTAGACCATGCAAAGCAGGGGAGCAATGTTTTCTCAGTTATGGGAAGCATCCAGGATCTCATCTTATCACTTTCTATGGTTTTCTACCAAGAGACAACCCTTATGATGTTATACCTTTAGATCTTGATACATCTGTGGATGAAGAAGACAGTTCATCTCCGTCCGTAACTACAAGCCAAACCAGTCATATGGTACGTGGGACATGGCTGTCCAGATTAAGAGGACCTCCGACGTATGGGCTGCCTCATCGCTTGGTATCCCATCTCCATGCCAT]
[+] EMBL AK103017 [CCCAAACAAGGCCCAAAAGGTTTCTGCTTTCAGCCTTCTTCATGCCAAAACCCCAATCCGGCCGGCGACTCTCCGACATCCCGGCCGGCGACCATGGCGGCGGCGGCGGCGGAGGTAGCAGCAGCGGGAGGAGGAGGAGAGATGGTGGTCGTCCGCCTGCCTCCCCTTTCCCAGGACGACCCCCTCTTCCAAGACAAGAAGAGGATATTGGACAGTAGAAACTTATCCTGTCTATTTCAAGTTCCAAACTCATGTTCTGCTGCTGATGCCTTCAAAGTACTGGATAGGATAATCCAAGCTGCTAGGATAGCTCATATGGATGAGCTTGAGCTTTATTTTACTGGAGACGATGATTTCGGGCCATTATCTACAAGGAATGAACTTGAATCTCTAAATTTGTTGCTCAAAATTTTGAACACGTTGCTTCTGACTGCCAATGTTGGTGCCATGGGAGTTTTGCAAGTCCTACGTGATGAAATACTTATTAGGCTCAGATCTCTTGAGTTGGAAGACAATGACCAAATGGTAGTTCAAATACGAAACCAGAACATGGAAGATTCTCTTCTGAAATGGGGGGAGCAACATGGTGTTAAAACTAAATTGCAAATAGCATTTTTTGAAGGAGCTGGGAGAGGAATGGTAGCTTCTGAAAACATAGATGTGGGGGATATTGCACTTGAAATTCCAGAGTCTTCTATCATATCTGAGGAACTTCTCTGCCAGTCTGGCATGTTTCTTGCATTAAAAGATTTAGATAGCATCACCACTGAGACTATGCTATTGTTGTGGAGCATCAGAGAGCGGTACAATCCATCTTCAAAGTTTAAGATATACTTCGAGGCACTCCCAGCAAATTTCAATACAGGGCTGAGTTTTGGAATTGATGCACTTGCTGCATTGGAAGGAACCCTTCTTTTTGATGAGTTAATGCAAGCTAGGCAGCATTTGCGCCAGCAGTATGATGAGTTATTTCCAATGCTGTGCATAAAGTTTCCTGATATATTCAAACAAGACGTGTATACCTGGGACAATTTTCTATGGGCATGTGAATTATGGTATTCTAACAGTATGATGGTTGTATTAAGTAGTGGGAAATTAACAACTTGCTTGATTCCTATTGCCGGACTTCTGAACCACTCGGTTTCTCCTCACATTCTTAACTATGGTCGGGTAGATAAAGTTACGAAATCTTTGAAATTTCCTCTGTCTAGACCATGCAAAGCAGGGGAGCAATGTTTTCTCAGTTATGGGAAGCATCCAGGATCTCATCTTATCACTTTCTATGGTTTTCTACCAAGAGACAACCCTTATGATGTTATACCTTTAGATCTTGATACATCTGTGGATGAAGAAGACAGTTCATCTCCGTCCGTAACTACAAGCCAAACCAGTCATATGGTACGTGGGACATGGCTGTCCAGATTAAGAGGACCTCCGACGTATGGGCTGCCTCATCGCTTGGTATCCCATCTCCATGCCAT]
consensusID : consensus_2646#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1270 fasta sequence
[TACTTTTTTTTCTGTAGGTTTCTCCTCACATTCTTAACTATGGTCGGGTAGATAAAGTTACGAAATCTTTGAAATTTCCTCTGTCTAGACCATGCAAAGCAGGGGAGCAATGTTTTCTCAGTTATGGGAAGCATCCAGGATCTCATCTTATCACTTTCTATGGTTTTCTACCAAGAGACAACCCTTATGATGTTATACCTTTAGATCTTGATACATCTGTGGATGAAGAAGACAGTTCATCTCCGTCCGTAACTACAAGCCAAACCAGTCATATGGTACGTGGGACATGGCTGTCCAGATTAAGAGGACCTCCGACGTATGGGCTGCCTCATCGCTTGGTATCCCATCTCCATGCCATTCTAGGTTGTAATCAGAACGAATCCGCTCCAGAGGCTGATAACAAGGAAAATGACAGGATGGTGCTCGAAACACTCCTCTCCATATTTACTCCCATGCTTGAAGGATTAGGCGAACCAGATGACTTCGACCGGGAGAACGCATGTTGGGACGTCAATCTCGCACTGGACTACAAAGATCTACAAAGAAGGATAGTTTTGTCCATTGTTACTTCGTGTACCTCAGGCTTGGCCATGCTTGATTCCTAGTCCGAACTCTTTAGTGCTTCATCATTGGATGTGCAAGACCACAATTGGAGTTTGTTGGGAGTGACTCAAGCTGACATGTGGATGGTGGAGCTGTTGCACATGGGTTACCTGCAACTGACTGCAAATCTGTTCTTTCCTGGATAGGGATCCAAGGACCAGTATGGCATTTGACCACCAGTCCCAAGTGAAGATGCTCAGCTCACAGCATCAGGTGTCTGATCCGATGATTACGCGAAATCCAGTCATCGATCTGTGCCCTCTGTGGCTTGAGATTTAAGTAAGTTGCCCCTGGTTGTTACTGCAAACCTGCTGCTTTTGGTGGAAGAAAGCTACTTCTGAACTAATTTATTGGGGATGGAGTAATGTCTCTTCGACCCATAACGCCGACATTTCAGCTTATTATTTATAAGATCATATTGCTGATCATGGAACTGCACATGGAATTTCTGCTAAATTAGTTTTCTCCCATGTGGTCCATATGCTAGAATAACTGAACACTGCATAAAAGGATGCTCCTTGAGTTGTGTGCTGAACCTGCTAGTTTTTTTCCCTTTTCTTTTCCTTGAGTTGTGTACTGAACCTGCTAGTTTTTTATTTTTCTTTTTTTTCCTTGAGTTATGAACTGTGCCTGTTACTTCCTCTATTTCATATTATAAGTCACTTTG]
[+] EMBL AK072666 [TACTTTTTTTTCTGTAGGTTTCTCCTCACATTCTTAACTATGGTCGGGTAGATAAAGTTACGAAATCTTTGAAATTTCCTCTGTCTAGACCATGCAAAGCAGGGGAGCAATGTTTTCTCAGTTATGGGAAGCATCCAGGATCTCATCTTATCACTTTCTATGGTTTTCTACCAAGAGACAACCCTTATGATGTTATACCTTTAGATCTTGATACATCTGTGGATGAAGAAGACAGTTCATCTCCGTCCGTAACTACAAGCCAAACCAGTCATATGGTACGTGGGACATGGCTGTCCAGATTAAGAGGACCTCCGACGTATGGGCTGCCTCATCGCTTGGTATCCCATCTCCATGCCATTCTAGGTTGTAATCAGAACGAATCCGCTCCAGAGGCTGATAACAAGGAAAATGACAGGATGGTGCTCGAAACACTCCTCTCCATATTTACTCCCATGCTTGAAGGATTAGGCGAACCAGATGACTTCGACCGGGAGAACGCATGTTGGGACGTCAATCTCGCACTGGACTACAAAGATCTACAAAGAAGGATAGTTTTGTCCATTGTTACTTCGTGTACCTCAGGCTTGGCCATGCTTGATTCCTAGTCCGAACTCTTTAGTGCTTCATCATTGGATGTGCAAGACCACAATTGGAGTTTGTTGGGAGTGACTCAAGCTGACATGTGGATGGTGGAGCTGTTGCACATGGGTTACCTGCAACTGACTGCAAATCTGTTCTTTCCTGGATAGGGATCCAAGGACCAGTATGGCATTTGACCACCAGTCCCAAGTGAAGATGCTCAGCTCACAGCATCAGGTGTCTGATCCGATGATTACGCGAAATCCAGTCATCGATCTGTGCCCTCTGTGGCTTGAGATTTAAGTAAGTTGCCCCTGGTTGTTACTGCAAACCTGCTGCTTTTGGTGGAAGAAAGCTACTTCTGAACTAATTTATTGGGGATGGAGTAATGTCTCTTCGACCCATAACGCCGACATTTCAGCTTATTATTTATAAGATCATATTGCTGATCATGGAACTGCACATGGAATTTCTGCTAAATTAGTTTTCTCCCATGTGGTCCATATGCTAGAATAACTGAACACTGCATAAAAGGATGCTCCTTGAGTTGTGTGCTGAACCTGCTAGTTTTTTTCCCTTTTCTTTTCCTTGAGTTGTGTACTGAACCTGCTAGTTTTTTATTTTTCTTTTTTTTCCTTGAGTTATGAACTGTGCCTGTTACTTCCTCTATTTCATATTATAAGTCACTTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2646#0 CCCAAACAAGGCCCAAAAGGTTTCTGCTTTCAGCCTTCTTCATGCCAAAACCCCAATCCG 60
consensus_2646#1 ------------------------------------------------------------
consensus_2646#0 GCCGGCGACTCTCCGACATCCCGGCCGGCGACCATGGCGGCGGCGGCGGCGGAGGTAGCA 120
consensus_2646#1 ------TACTTTTTTTTCTGTAGGTTTCTCCTCACATTCTTAACTATGGTCG-GGTAGAT 53
*** * * ** ** * ** * *****
consensus_2646#0 GCAGCGGGAGGAGGAGGAGAGATGGTGGTCGTCCGCCTGCCTCCCCTTTCCCAGGACGAC 180
consensus_2646#1 AAAGTTACGAAATCTTTGAAATT-----TCCTCTGTCTAGACCATGCAAAGCAGGGGAGC 108
** * * * ** ** * ** * **** *
consensus_2646#0 CCCCTCTTCCAAGACAAGAAGAGGATATTGGACAGTAGAAACTTATCCTGTCTATTTCAA 240
consensus_2646#1 AATGTTTTCTCAGTTATGGGAAGCATCC--------AGGATCTCATCTTATCACTTTC-- 158
* *** ** * * ** ** ** * ** *** * ** ****
consensus_2646#0 GTTCCAAACTCATGTTCTGCTGCTGATGCCTTCAAAGTACTGGATAGGATAATCCAAGCT 300
consensus_2646#1 ----------TATGGTTTTCTACCAAGAG--ACAACCCTTATGATGTTATACCTTTAGAT 206
*** * * ** * * *** *** *** ** *
consensus_2646#0 GCTAGGATAGCT-CATATGGATGAGCTTGAGCTTTATTTTACTGGAGACGATGATTTCGG 359
consensus_2646#1 CTTGATACATCTGTGGATGAAGAAGAC--AGTTCATCTCCGTCCGTAACTACAAGCCAAA 264
* * * ** *** * ** ** * * * ** * *
consensus_2646#0 GCCATTATCTACAAGGAATGAACTTGAATCTCTAAATTTGTTGCTCAAAATTTTGAACAC 419
consensus_2646#1 CCAGTCATATGGTACGTG-GGACATGGCTGTCCAGATTAAGAGGACCTC-CGACGTATGG 322
* * ** * * * * ** ** * ** * *** * * * *
consensus_2646#0 GTTGCTTC-TGACTGCCAATGTTGGTGCCATGGGAGTTTTGCAAGTCCTACGTGATGAAA 478
consensus_2646#1 GCTGCCTCATCGCTTGGTATCCCATCTCCATGCCA---TTCTAGGTT----GTAATCAGA 375
* *** ** * ** ** ***** * ** * ** ** ** * *
consensus_2646#0 TACTTATTAGGCTCAGATCTCTTGAGTTGGAAGACAATGACCAAATGGTAGTTCAAATAC 538
consensus_2646#1 -ACGAATCCGCTCCAGAGG--CTGATAACAAGGAAAATGACAGGATGGTGCTCGAAACAC 432
** ** * **** *** * ** ****** ***** * *** **
consensus_2646#0 GAAACCAGAACATGGAAGATTCTCTTCTGAAATGGGGGGAGCAACATGGTGTTAAAACTA 598
consensus_2646#1 T---CCTCTCCATATTTACTCCCATGCTTGAAGGATTAGGCGAACCAGATG---ACTTCG 486
** *** * * * ** ** * * *** * ** *
consensus_2646#0 AATTGCAAATAGCATTTTTTGAAG--GAGCTGGGAGAGGAATGGTAGCTTCTGAAAACAT 656
consensus_2646#1 ACCGGGAGAACGCATGTTGGGACGTCAATCTCGCACTGGACTACAAAGATCTACAAAGAA 546
* * * * **** ** ** * * ** * * *** * * *** *** *
consensus_2646#0 AGATGTGGGGGATATTGCACTTGAAATTCCAGAGTCTTCTATCATATCTGAGGAACTTCT 716
consensus_2646#1 GGATA-----GTTTTGTCCATTGTTACTTCGTGTACCTCAGGCTTGGCCATG---CTTGA 598
*** * * * * *** * * * * ** * * * * ***
consensus_2646#0 CTGCCAGTCTGGCATGTTTCTTGCATTAAAAGATTTAGATA-GCATCACCACTGAGACTA 775
consensus_2646#1 TTCCTAGTCCGAACTCTTTAGTGCTTCATCA---TTGGATGTGCAAGACCAC---AATTG 652
* * **** * * *** *** * * * ** *** *** ***** * *
consensus_2646#0 TGCTATTGTTGTGGAGCATCAGAGAGCGGTACAATCCATCTTCAAA--GTTTAAGATATA 833
consensus_2646#1 GAGT-TTGTTG-GGAGTGACTCAAGCTGACATG-TGGATGGTGGAGCTGTTGCACATGGG 709
* ****** **** * * * * * ** * * *** * **
consensus_2646#0 CTTCGAGGCACTCCCAGCAAATTTCAATACAGGGCTGAGTTTTGGAATTGATGCACT--T 891
consensus_2646#1 TTACCTGCAACTGACTGCAAATCT--GTTCTTTCCTGGAT--AGGGATCCAAGGACCAGT 765
* * * *** * ****** * * * *** * ** ** * * ** *
consensus_2646#0 GCTGCATTGGA--AGGAACCCTTCTTTTTGATGAGTTAATGCAAGCTAGGCAGCATTTGC 949
consensus_2646#1 ATGGCATTTGACCACCAGTCCCAAGTGAAGATGC-TCAGCTCACAGCATCAGGTGTCTGA 824
***** ** * * ** * **** * * ** * * * **
consensus_2646#0 GCCAGCAGTATGATGAGTTATTTCCAATG--CTGTGCATAAAGTTTCCTGATATATTCAA 1007
consensus_2646#1 TCCGATGATTACGCGAAATCCAGTCATCGATCTGTGCCCTCTGTGGCTTGAGA--TTTAA 882
** * ** * ** * ****** ** * *** * ** **
consensus_2646#0 ACAAGACGTGTATACCTGGGACAATTTTCTATGGGCATGTGAATTATGGTATTCTAACAG 1067
consensus_2646#1 GTAAGTTGCCCCTGGTTG-------TTACTGCAAACCTGCTGCTTTTGGTGGAAGAAAGC 935
*** * * ** ** ** * ** ** **** **
consensus_2646#0 TA-TGATGGTTGTATTAAGTAGTGGGAAATTAACAACTTGCTTGATTCCTATTGCCGGAC 1126
consensus_2646#1 TACTTCTGAACTAATTTATTGGGGATGGAGTAATGTCTC-TTCGACCCATAACGCCGACA 994
** * ** *** * * * * * *** ** * ** * ** ****
consensus_2646#0 TTCTGAACCACTCGGTTTCTCCTCACATTCTTAACTATGGTCGGGTAGATAAAGTTACGA 1186
consensus_2646#1 TTTCAGCTTATTATTTATAAGATCATATTGCTGATCATGGAACTGCACATGGAATTTCTG 1054
** * * * * *** *** * * **** * * ** * ** *
consensus_2646#0 AATCTTTGAAATTTCCTCTGTCTAGACCATGCAAAGCAGGGGAGCAATGTTTTCTCAGTT 1246
consensus_2646#1 C-TAAATTAGTTTTCTCCCATGTGGTCCATATGC--TAGAATAAC--TGAACACTGCATA 1109
* * * **** * * * * **** ** * * ** ** *
consensus_2646#0 ATGGGAAGCATCCAGGATCTCATCTTATCACTTTCTATGGTTTTCTACCAAGAGACAACC 1306
consensus_2646#1 AAAGGATGCTCCTTGAGTTGTGTGCTGA-ACCTGCTA--GTTTTTTTCCCTTTTCTTTTC 1166
* *** ** * * * * * ** * *** ***** * ** *
consensus_2646#0 CTTATGATGTTATACCTTTAGATCTTGATACATCTGTGGATGAAGAAGACAGTTCATCTC 1366
consensus_2646#1 CTTGAGTTGT-GTACT----GAACCTGCTAGTTTTTTATTT-----------TTCTTTTT 1210
*** * *** *** ** * ** ** * * * * *** * *
consensus_2646#0 CGTCCGTAA-CTACAAGCCAAACCAGTCATATGGTACGTGGGACATGGCTGTCCAGATTA 1425
consensus_2646#1 TTTCCTTGAGTTATGAACTGTGCCTGTTACTTCCTCTATTTCATATTATAAGTCACTTTG 1270
*** * * ** * * ** ** * * * * * ** ** **
consensus_2646#0 AGAGGACCTCCGACGTATGGGCTGCCTCATCGCTTGGTATCCCATCTCCATGCCAT 1481
consensus_2646#1 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||