cluster # 2669

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Oryza sativa
cluster # 2669 cluster # 2669 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2669#0 length = 1113 sequences # 1

consensus_2669#1 length = 778 sequences # 1

consensusID : consensus_2669#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1113
fasta sequence

                              [ATATGTGAGCAACGCTAAGAAAATTTTAGTTCATCAGTTGGCTCCTTCCCATAGTACGTGATTGTTGGAAAGCAAATACTAGTAATCTAGGTCGATCAAATTAAACATAATCGAATCAAAGAACCTGTTTACAGGAAAAAGGTAAGCTTTGCTCCCCTGAACTTTAGCTATGGGAATTTTTGTAACATAGGTTCTGATCCCATCTATCATCCCATAAATTTTCAACTTAGAACACAGCTTGTACGACAGGAAGCAAAAATGGCAGTTGTTTTTAGGGATTAAAACAAGCTATCACTTCTTTTGGTGAAATAGTTCCGCTGTAGAAAAATGGACTGATTAACTTAGTTATGCGACATGAGCATCTGCATGTATAGTTTCTCGTTTTCTGGAGAAATCTCCAGTTCAATTGAACCTATGAAAACTCGATTTCTCTATGTTCACGAAGAAATTATTAAAGGTAGGGATAGGCATGATCTCTTTCTCACCAAATTTCTAAGACCAAACTCAACTTCGTTTGGAAAGTTAAAATAAGACAAATTTTGCATGAAACTTCCCTATCACTATCCGTGCAAAGTTTGTATTTCTTGTATCTTGCAAGCAAATTTGAATTTGGTCTTGAAATTTTGTGGAGATATAGACCATGCCTATACCTACCACTAATATTTATGGATGAGAGTCATCTCGCTGGGATGTACTAGAAAGTAGGGGTGGTCTATTTTGTTTATTTTGAATGAATGGGTTTATTGTTGGCTTATTGTAAATTGCATTTCAACTTATTCCATTTTTATTCTCCCGTGTTGCATTTTGAGCATATTATGTCGTTATGGTTGCTCTATTGTTTTTTCTAAATTGGGTCATTTCCCTTCTATTTTCTCCGTCCCATAATATCACAAAATTTGTTGGACATGAGACTTGTTCAGATTCGCCAATCCTAGGTTGCTATGGGACAGGGAGAGTATAAAATATTGAACTTTACATCATCACAATCAGAAGCATAAAATCGCATCAGGGAGAGAGGTGAAGGGGAGTAAGAGGCTGACGAGTGGGTCCCACACCTTTTCCACCCGAGTTTGCCATGAGGGCAAAAGTGGCAAATAGTTAAGACCATCTCTT]

[+] EMBL AK062968             [ATATGTGAGCAACGCTAAGAAAATTTTAGTTCATCAGTTGGCTCCTTCCCATAGTACGTGATTGTTGGAAAGCAAATACTAGTAATCTAGGTCGATCAAATTAAACATAATCGAATCAAAGAACCTGTTTACAGGAAAAAGGTAAGCTTTGCTCCCCTGAACTTTAGCTATGGGAATTTTTGTAACATAGGTTCTGATCCCATCTATCATCCCATAAATTTTCAACTTAGAACACAGCTTGTACGACAGGAAGCAAAAATGGCAGTTGTTTTTAGGGATTAAAACAAGCTATCACTTCTTTTGGTGAAATAGTTCCGCTGTAGAAAAATGGACTGATTAACTTAGTTATGCGACATGAGCATCTGCATGTATAGTTTCTCGTTTTCTGGAGAAATCTCCAGTTCAATTGAACCTATGAAAACTCGATTTCTCTATGTTCACGAAGAAATTATTAAAGGTAGGGATAGGCATGATCTCTTTCTCACCAAATTTCTAAGACCAAACTCAACTTCGTTTGGAAAGTTAAAATAAGACAAATTTTGCATGAAACTTCCCTATCACTATCCGTGCAAAGTTTGTATTTCTTGTATCTTGCAAGCAAATTTGAATTTGGTCTTGAAATTTTGTGGAGATATAGACCATGCCTATACCTACCACTAATATTTATGGATGAGAGTCATCTCGCTGGGATGTACTAGAAAGTAGGGGTGGTCTATTTTGTTTATTTTGAATGAATGGGTTTATTGTTGGCTTATTGTAAATTGCATTTCAACTTATTCCATTTTTATTCTCCCGTGTTGCATTTTGAGCATATTATGTCGTTATGGTTGCTCTATTGTTTTTTCTAAATTGGGTCATTTCCCTTCTATTTTCTCCGTCCCATAATATCACAAAATTTGTTGGACATGAGACTTGTTCAGATTCGCCAATCCTAGGTTGCTATGGGACAGGGAGAGTATAAAATATTGAACTTTACATCATCACAATCAGAAGCATAAAATCGCATCAGGGAGAGAGGTGAAGGGGAGTAAGAGGCTGACGAGTGGGTCCCACACCTTTTCCACCCGAGTTTGCCATGAGGGCAAAAGTGGCAAATAGTTAAGACCATCTCTT]




>consensus_2669#0
ATATGTGAGCAACGCTAAGAAAATTTTAGTTCATCAGTTGGCTCCTTCCCATAGTACGTG
ATTGTTGGAAAGCAAATACTAGTAATCTAGGTCGATCAAATTAAACATAATCGAATCAAA
GAACCTGTTTACAGGAAAAAGGTAAGCTTTGCTCCCCTGAACTTTAGCTATGGGAATTTT
TGTAACATAGGTTCTGATCCCATCTATCATCCCATAAATTTTCAACTTAGAACACAGCTT
GTACGACAGGAAGCAAAAATGGCAGTTGTTTTTAGGGATTAAAACAAGCTATCACTTCTT
TTGGTGAAATAGTTCCGCTGTAGAAAAATGGACTGATTAACTTAGTTATGCGACATGAGC
ATCTGCATGTATAGTTTCTCGTTTTCTGGAGAAATCTCCAGTTCAATTGAACCTATGAAA
ACTCGATTTCTCTATGTTCACGAAGAAATTATTAAAGGTAGGGATAGGCATGATCTCTTT
CTCACCAAATTTCTAAGACCAAACTCAACTTCGTTTGGAAAGTTAAAATAAGACAAATTT
TGCATGAAACTTCCCTATCACTATCCGTGCAAAGTTTGTATTTCTTGTATCTTGCAAGCA
AATTTGAATTTGGTCTTGAAATTTTGTGGAGATATAGACCATGCCTATACCTACCACTAA
TATTTATGGATGAGAGTCATCTCGCTGGGATGTACTAGAAAGTAGGGGTGGTCTATTTTG
TTTATTTTGAATGAATGGGTTTATTGTTGGCTTATTGTAAATTGCATTTCAACTTATTCC
ATTTTTATTCTCCCGTGTTGCATTTTGAGCATATTATGTCGTTATGGTTGCTCTATTGTT
TTTTCTAAATTGGGTCATTTCCCTTCTATTTTCTCCGTCCCATAATATCACAAAATTTGT
TGGACATGAGACTTGTTCAGATTCGCCAATCCTAGGTTGCTATGGGACAGGGAGAGTATA
AAATATTGAACTTTACATCATCACAATCAGAAGCATAAAATCGCATCAGGGAGAGAGGTG
AAGGGGAGTAAGAGGCTGACGAGTGGGTCCCACACCTTTTCCACCCGAGTTTGCCATGAG
GGCAAAAGTGGCAAATAGTTAAGACCATCTCTT

consensusID : consensus_2669#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 778
fasta sequence

                              [TGGCTCCCCCCGAATCTTGTTCTGCTATATATAAACTAAATTTCAGCTTATTATTTGGTCTTTTCTTTATTTGCGGGATGCATTTGAGAGCATATATTGTCATTGTAGTTCCCGTTAGATCTGGTTACAGGGACGGCTGTTAAGGAGTTACAGGCCAGATGATGATTGTATTTTTTTTGTTTGTTAATATATGAGCAACTCTAATAAAATTTTAGTTCATTAGTTGGATCCTTCCCATAGTACATGATTGTAGGAAAGCAAATACTAGTAATCTAGGTCGATCAAATTAAACATAATCGAATGAAAGAACCTGTTTACAGGAAAAAGGTAAACTTTGCTCCCCTGAACTTTAGCTATGGGAATTTTTGCAACATAGGTTCTGATCCCGTCTATCATCCCATAAACTTTCAACTTAGAACACAGCTTGTACGACAGGAAGCAAAAATGCCAGTTGTTTTTAGGGATTAAAACAAGCTATATCACTTCTTTTAGTGAAATAGTTTCGCAGTAGAAAAATGGACTGATTTTTAACTTAATTATGGGGCATGAGCATCCGCATGTATAGTTTCTCCTTTTCTGGTGGACAGTTGTTATTCTTTTTTCTGGAGAAATCTCCAGTTCAATTAAACCTATGAAAACTCAATTTTTCTATGTTCACGAAGAAATTATTAAAGGTAGGGATAGGCATGGTCTCTTTCTCACCAAATTTCTAAGACCAAACTCAACTTCGTTTGGAAGATTANAAGAAGACAAATTCTGCATGAAACTTTCCTATCAC]

[+] EMBL CB680314             [TGGCTCCCCCCGAATCTTGTTCTGCTATATATAAACTAAATTTCAGCTTATTATTTGGTCTTTTCTTTATTTGCGGGATGCATTTGAGAGCATATATTGTCATTGTAGTTCCCGTTAGATCTGGTTACAGGGACGGCTGTTAAGGAGTTACAGGCCAGATGATGATTGTATTTTTTTTGTTTGTTAATATATGAGCAACTCTAATAAAATTTTAGTTCATTAGTTGGATCCTTCCCATAGTACATGATTGTAGGAAAGCAAATACTAGTAATCTAGGTCGATCAAATTAAACATAATCGAATGAAAGAACCTGTTTACAGGAAAAAGGTAAACTTTGCTCCCCTGAACTTTAGCTATGGGAATTTTTGCAACATAGGTTCTGATCCCGTCTATCATCCCATAAACTTTCAACTTAGAACACAGCTTGTACGACAGGAAGCAAAAATGCCAGTTGTTTTTAGGGATTAAAACAAGCTATATCACTTCTTTTAGTGAAATAGTTTCGCAGTAGAAAAATGGACTGATTTTTAACTTAATTATGGGGCATGAGCATCCGCATGTATAGTTTCTCCTTTTCTGGTGGACAGTTGTTATTCTTTTTTCTGGAGAAATCTCCAGTTCAATTAAACCTATGAAAACTCAATTTTTCTATGTTCACGAAGAAATTATTAAAGGTAGGGATAGGCATGGTCTCTTTCTCACCAAATTTCTAAGACCAAACTCAACTTCGTTTGGAAGATTANAAGAAGACAAATTCTGCATGAAACTTTCCTATCAC]




>consensus_2669#1
TGGCTCCCCCCGAATCTTGTTCTGCTATATATAAACTAAATTTCAGCTTATTATTTGGTC
TTTTCTTTATTTGCGGGATGCATTTGAGAGCATATATTGTCATTGTAGTTCCCGTTAGAT
CTGGTTACAGGGACGGCTGTTAAGGAGTTACAGGCCAGATGATGATTGTATTTTTTTTGT
TTGTTAATATATGAGCAACTCTAATAAAATTTTAGTTCATTAGTTGGATCCTTCCCATAG
TACATGATTGTAGGAAAGCAAATACTAGTAATCTAGGTCGATCAAATTAAACATAATCGA
ATGAAAGAACCTGTTTACAGGAAAAAGGTAAACTTTGCTCCCCTGAACTTTAGCTATGGG
AATTTTTGCAACATAGGTTCTGATCCCGTCTATCATCCCATAAACTTTCAACTTAGAACA
CAGCTTGTACGACAGGAAGCAAAAATGCCAGTTGTTTTTAGGGATTAAAACAAGCTATAT
CACTTCTTTTAGTGAAATAGTTTCGCAGTAGAAAAATGGACTGATTTTTAACTTAATTAT
GGGGCATGAGCATCCGCATGTATAGTTTCTCCTTTTCTGGTGGACAGTTGTTATTCTTTT
TTCTGGAGAAATCTCCAGTTCAATTAAACCTATGAAAACTCAATTTTTCTATGTTCACGA
AGAAATTATTAAAGGTAGGGATAGGCATGGTCTCTTTCTCACCAAATTTCTAAGACCAAA
CTCAACTTCGTTTGGAAGATTANAAGAAGACAAATTCTGCATGAAACTTTCCTATCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2669#0      ------------------------------------------------------------
consensus_2669#1      TGGCTCCCCCCGAATCTTGTTCTGCTATATATAAACTAAATTTCAGCTTATTATTTGGTC 60
                                                                                  

consensus_2669#0      ------------------------------------------------------------
consensus_2669#1      TTTTCTTTATTTGCGGGATGCATTTGAGAGCATATATTGTCATTGTAGTTCCCGTTAGAT 120
                                                                                  

consensus_2669#0      ------------------------------------------------------------
consensus_2669#1      CTGGTTACAGGGACGGCTGTTAAGGAGTTACAGGCCAGATGATGATTGTATTTTTTTTGT 180
                                                                                  

consensus_2669#0      ------ATATGTGAGCAACGCTAAGAAAATTTTAGTTCATCAGTTGGCTCCTTCCCATAG 54
consensus_2669#1      TTGTTAATATATGAGCAACTCTAATAAAATTTTAGTTCATTAGTTGGATCCTTCCCATAG 240
                            **** ******** **** *************** ****** ************

consensus_2669#0      TACGTGATTGTTGGAAAGCAAATACTAGTAATCTAGGTCGATCAAATTAAACATAATCGA 114
consensus_2669#1      TACATGATTGTAGGAAAGCAAATACTAGTAATCTAGGTCGATCAAATTAAACATAATCGA 300
                      *** ******* ************************************************

consensus_2669#0      ATCAAAGAACCTGTTTACAGGAAAAAGGTAAGCTTTGCTCCCCTGAACTTTAGCTATGGG 174
consensus_2669#1      ATGAAAGAACCTGTTTACAGGAAAAAGGTAAACTTTGCTCCCCTGAACTTTAGCTATGGG 360
                      ** **************************** ****************************

consensus_2669#0      AATTTTTGTAACATAGGTTCTGATCCCATCTATCATCCCATAAATTTTCAACTTAGAACA 234
consensus_2669#1      AATTTTTGCAACATAGGTTCTGATCCCGTCTATCATCCCATAAACTTTCAACTTAGAACA 420
                      ******** ****************** **************** ***************

consensus_2669#0      CAGCTTGTACGACAGGAAGCAAAAATGGCAGTTGTTTTTAGGGATTAAAACAAGCTAT-- 292
consensus_2669#1      CAGCTTGTACGACAGGAAGCAAAAATGCCAGTTGTTTTTAGGGATTAAAACAAGCTATAT 480
                      *************************** ******************************  

consensus_2669#0      CACTTCTTTTGGTGAAATAGTTCCGCTGTAGAAAAATGGACTGATT---AACTTAGTTAT 349
consensus_2669#1      CACTTCTTTTAGTGAAATAGTTTCGCAGTAGAAAAATGGACTGATTTTTAACTTAATTAT 540
                      ********** *********** *** *******************   ****** ****

consensus_2669#0      GCGACATGAGCATCTGCATGTATAGTTTCTCGTTTTCTGG-------------------- 389
consensus_2669#1      GGGGCATGAGCATCCGCATGTATAGTTTCTCCTTTTCTGGTGGACAGTTGTTATTCTTTT 600
                      * * ********** **************** ********                    

consensus_2669#0      ------AGAAATCTCCAGTTCAATTGAACCTATGAAAACTCGATTTCTCTATGTTCACGA 443
consensus_2669#1      TTCTGGAGAAATCTCCAGTTCAATTAAACCTATGAAAACTCAATTTTTCTATGTTCACGA 660
                            ******************* *************** **** *************

consensus_2669#0      AGAAATTATTAAAGGTAGGGATAGGCATGATCTCTTTCTCACCAAATTTCTAAGACCAAA 503
consensus_2669#1      AGAAATTATTAAAGGTAGGGATAGGCATGGTCTCTTTCTCACCAAATTTCTAAGACCAAA 720
                      ***************************** ******************************

consensus_2669#0      CTCAACTTCGTTTGGAAAGTTAAAATAAGACAAATTTTGCATGAAACTTCCCTATCACTA 563
consensus_2669#1      CTCAACTTCGTTTGGAAGATTANAAGAAGACAAATTCTGCATGAAACTTTCCTATCAC-- 778
                      *****************  *** ** ********** ************ ********  

consensus_2669#0      TCCGTGCAAAGTTTGTATTTCTTGTATCTTGCAAGCAAATTTGAATTTGGTCTTGAAATT 623
consensus_2669#1      ------------------------------------------------------------
                                                                                  

consensus_2669#0      TTGTGGAGATATAGACCATGCCTATACCTACCACTAATATTTATGGATGAGAGTCATCTC 683
consensus_2669#1      ------------------------------------------------------------
                                                                                  

consensus_2669#0      GCTGGGATGTACTAGAAAGTAGGGGTGGTCTATTTTGTTTATTTTGAATGAATGGGTTTA 743
consensus_2669#1      ------------------------------------------------------------
                                                                                  

consensus_2669#0      TTGTTGGCTTATTGTAAATTGCATTTCAACTTATTCCATTTTTATTCTCCCGTGTTGCAT 803
consensus_2669#1      ------------------------------------------------------------
                                                                                  

consensus_2669#0      TTTGAGCATATTATGTCGTTATGGTTGCTCTATTGTTTTTTCTAAATTGGGTCATTTCCC 863
consensus_2669#1      ------------------------------------------------------------
                                                                                  

consensus_2669#0      TTCTATTTTCTCCGTCCCATAATATCACAAAATTTGTTGGACATGAGACTTGTTCAGATT 923
consensus_2669#1      ------------------------------------------------------------
                                                                                  

consensus_2669#0      CGCCAATCCTAGGTTGCTATGGGACAGGGAGAGTATAAAATATTGAACTTTACATCATCA 983
consensus_2669#1      ------------------------------------------------------------
                                                                                  

consensus_2669#0      CAATCAGAAGCATAAAATCGCATCAGGGAGAGAGGTGAAGGGGAGTAAGAGGCTGACGAG 1043
consensus_2669#1      ------------------------------------------------------------
                                                                                  

consensus_2669#0      TGGGTCCCACACCTTTTCCACCCGAGTTTGCCATGAGGGCAAAAGTGGCAAATAGTTAAG 1103
consensus_2669#1      ------------------------------------------------------------
                                                                                  

consensus_2669#0      ACCATCTCTT 1113
consensus_2669#1      ----------