cluster # 2679

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Oryza sativa
cluster # 2679 cluster # 2679 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2679#0 length = 635 sequences # 1

consensus_2679#1 length = 489 sequences # 1

consensusID : consensus_2679#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 635
fasta sequence

                              [CTCGAGTTTGTTTTTCCCTTTTTGGATGTGACATTTTATCAGGCAGATTATATGGGACCTGTTAGATAATTACAGGCTATAGCTAGCTTTGCATTTACAGATAAAAGCGCGACTAGTGAAAGAAGAAAACTATCGAGCTATGTATGACGTTTTCATGAGCTATATTTCCCATATTCGTGGGTCCTTAAGCTTAGAAGACATCTGGGGAGGGTCGAGAGAGTCGTTCATCTTCCAGTAGCTCATATGGATCAATGTATGGTGGAGGCGATACTGGTGTCTTGCTTGCATCGTGTACAAAACTTGGTCCAAAATACACATAAAGAACAGCAAACAGAGAAACTGTAACAAGAATCAAAGGGGCAAATCCAAGAAAAAATGTACTGCCAAGTGACAATAGCAACTTTGCCCGTGGAACAAGACCCTCGAGGCCCTCACTGTTGAGAGCCATGGACTTCGCCCGCTGCCCATCCGCCCCGGCGGCCGCCCGCTCGAACTCCGCCGCCGCCACCCGCTTCCTCCCGCCCTCCTCCGCCCCCACCTCCTTCTCCCCGGCGCCCGCCGCCGCCGCCCCCGACGCCATCCCCCTCCGCGTCAGCTCCTTCGCGAACAGCGACTCCGGCGCCTCCTCCCCCTCC]

[+] EMBL CB680708             [CTCGAGTTTGTTTTTCCCTTTTTGGATGTGACATTTTATCAGGCAGATTATATGGGACCTGTTAGATAATTACAGGCTATAGCTAGCTTTGCATTTACAGATAAAAGCGCGACTAGTGAAAGAAGAAAACTATCGAGCTATGTATGACGTTTTCATGAGCTATATTTCCCATATTCGTGGGTCCTTAAGCTTAGAAGACATCTGGGGAGGGTCGAGAGAGTCGTTCATCTTCCAGTAGCTCATATGGATCAATGTATGGTGGAGGCGATACTGGTGTCTTGCTTGCATCGTGTACAAAACTTGGTCCAAAATACACATAAAGAACAGCAAACAGAGAAACTGTAACAAGAATCAAAGGGGCAAATCCAAGAAAAAATGTACTGCCAAGTGACAATAGCAACTTTGCCCGTGGAACAAGACCCTCGAGGCCCTCACTGTTGAGAGCCATGGACTTCGCCCGCTGCCCATCCGCCCCGGCGGCCGCCCGCTCGAACTCCGCCGCCGCCACCCGCTTCCTCCCGCCCTCCTCCGCCCCCACCTCCTTCTCCCCGGCGCCCGCCGCCGCCGCCCCCGACGCCATCCCCCTCCGCGTCAGCTCCTTCGCGAACAGCGACTCCGGCGCCTCCTCCCCCTCC]




>consensus_2679#0
CTCGAGTTTGTTTTTCCCTTTTTGGATGTGACATTTTATCAGGCAGATTATATGGGACCT
GTTAGATAATTACAGGCTATAGCTAGCTTTGCATTTACAGATAAAAGCGCGACTAGTGAA
AGAAGAAAACTATCGAGCTATGTATGACGTTTTCATGAGCTATATTTCCCATATTCGTGG
GTCCTTAAGCTTAGAAGACATCTGGGGAGGGTCGAGAGAGTCGTTCATCTTCCAGTAGCT
CATATGGATCAATGTATGGTGGAGGCGATACTGGTGTCTTGCTTGCATCGTGTACAAAAC
TTGGTCCAAAATACACATAAAGAACAGCAAACAGAGAAACTGTAACAAGAATCAAAGGGG
CAAATCCAAGAAAAAATGTACTGCCAAGTGACAATAGCAACTTTGCCCGTGGAACAAGAC
CCTCGAGGCCCTCACTGTTGAGAGCCATGGACTTCGCCCGCTGCCCATCCGCCCCGGCGG
CCGCCCGCTCGAACTCCGCCGCCGCCACCCGCTTCCTCCCGCCCTCCTCCGCCCCCACCT
CCTTCTCCCCGGCGCCCGCCGCCGCCGCCCCCGACGCCATCCCCCTCCGCGTCAGCTCCT
TCGCGAACAGCGACTCCGGCGCCTCCTCCCCCTCC

consensusID : consensus_2679#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 489
fasta sequence

                              [CCTCCTCCTTTACCACCACCAATGGCGACCATGGCCGTGATCCGCCTCGCGCTCCCGGCGATCCCGGCGGCCGCGTCGTCGTCGGCGTCGTCGGGGTGCAGCGTAAGGACGCGCACGCGGGGGCGTGTGGTGCGGATGCGGGTGAGGTGCCGCGCTGTGGGGAGAGAGGGTGGGGAAGGGGAGGGGGATGGTATGGATCAATGTATGGTGGAGGCGATACTGGTGTCTTGCTTGCATCGTGTACAAAACTTGGTCCAAAATACACATAAAGAACAGCAAACAGAGAAACTGTAACAAGAATCAAAGGGGCAAATCCAAGAAAAAATGTACTGCCAAGTGACAATAGCAACTTTGCCCGTGGAACAAGACCCTCGAGGCCCTCACTGTTGAGAGCCATGGACTTCGCCCGCTGCCCATCCGCCCCGGCGGCCGCCCGCTCGAACTCCGCCGCCGCCACCCGCTTCCTCCCGCCCTCCTCCGGCCCCACCT]

[+] EMBL CB680707             [CCTCCTCCTTTACCACCACCAATGGCGACCATGGCCGTGATCCGCCTCGCGCTCCCGGCGATCCCGGCGGCCGCGTCGTCGTCGGCGTCGTCGGGGTGCAGCGTAAGGACGCGCACGCGGGGGCGTGTGGTGCGGATGCGGGTGAGGTGCCGCGCTGTGGGGAGAGAGGGTGGGGAAGGGGAGGGGGATGGTATGGATCAATGTATGGTGGAGGCGATACTGGTGTCTTGCTTGCATCGTGTACAAAACTTGGTCCAAAATACACATAAAGAACAGCAAACAGAGAAACTGTAACAAGAATCAAAGGGGCAAATCCAAGAAAAAATGTACTGCCAAGTGACAATAGCAACTTTGCCCGTGGAACAAGACCCTCGAGGCCCTCACTGTTGAGAGCCATGGACTTCGCCCGCTGCCCATCCGCCCCGGCGGCCGCCCGCTCGAACTCCGCCGCCGCCACCCGCTTCCTCCCGCCCTCCTCCGGCCCCACCT]




>consensus_2679#1
CCTCCTCCTTTACCACCACCAATGGCGACCATGGCCGTGATCCGCCTCGCGCTCCCGGCG
ATCCCGGCGGCCGCGTCGTCGTCGGCGTCGTCGGGGTGCAGCGTAAGGACGCGCACGCGG
GGGCGTGTGGTGCGGATGCGGGTGAGGTGCCGCGCTGTGGGGAGAGAGGGTGGGGAAGGG
GAGGGGGATGGTATGGATCAATGTATGGTGGAGGCGATACTGGTGTCTTGCTTGCATCGT
GTACAAAACTTGGTCCAAAATACACATAAAGAACAGCAAACAGAGAAACTGTAACAAGAA
TCAAAGGGGCAAATCCAAGAAAAAATGTACTGCCAAGTGACAATAGCAACTTTGCCCGTG
GAACAAGACCCTCGAGGCCCTCACTGTTGAGAGCCATGGACTTCGCCCGCTGCCCATCCG
CCCCGGCGGCCGCCCGCTCGAACTCCGCCGCCGCCACCCGCTTCCTCCCGCCCTCCTCCG
GCCCCACCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2679#0      CTCGAGTTTGTTTTTCCCTTTTTGGATGTGACATTTTATCAGGCAGATTATATGGGACCT 60
consensus_2679#1      ------------------------------------------CCTCCTCCTTTACCACCA 18
                                                                 *   *  * *   *** 

consensus_2679#0      GTTA-GATAATTACAGGCTATAGCTAGCTTTGCATTTACAGATAAAAGCGCGACTAGTGA 119
consensus_2679#1      CCAATGGCGACCAT-GGCCGTGATCCGCCTCGCGCTCCCGGCGATCCCGGCGGCCGCGTC 77
                         * *   *  *  ***  *     ** * **  *  * *  *     *** *      

consensus_2679#0      AAGAAGAAAACTATCGAGCTATGTATGACGTTTTCATGAGCTATATTTCCCATATTCGTG 179
consensus_2679#1      GTCGTCGGCGTCGTCGGG----GTGCAGCGTAAGGACGCGCA------CGCGGGGGCGTG 127
                                   *** *    **    ***    * * **       * *     ****

consensus_2679#0      -GGTCCTTAAGCTTAGAAGACATC-TGGGGAGGGTCGAGAGAGTCGTTCATCTTCCAGTA 237
consensus_2679#1      TGGTGCGGATGCGGGTGAGGTGCCGCGCTGTGGGGAGAGAGGGTGGGGAAGGGGA-GGGG 186
                       *** *  * **     **    *  *  * ***  ***** ** *   *       *  

consensus_2679#0      GCTCATATGGATCAATGTATGGTGGAGGCGATACTGGTGTCTTGCTTGCATCGTGTACAA 297
consensus_2679#1      GATGGTATGGATCAATGTATGGTGGAGGCGATACTGGTGTCTTGCTTGCATCGTGTACAA 246
                      * *  *******************************************************

consensus_2679#0      AACTTGGTCCAAAATACACATAAAGAACAGCAAACAGAGAAACTGTAACAAGAATCAAAG 357
consensus_2679#1      AACTTGGTCCAAAATACACATAAAGAACAGCAAACAGAGAAACTGTAACAAGAATCAAAG 306
                      ************************************************************

consensus_2679#0      GGGCAAATCCAAGAAAAAATGTACTGCCAAGTGACAATAGCAACTTTGCCCGTGGAACAA 417
consensus_2679#1      GGGCAAATCCAAGAAAAAATGTACTGCCAAGTGACAATAGCAACTTTGCCCGTGGAACAA 366
                      ************************************************************

consensus_2679#0      GACCCTCGAGGCCCTCACTGTTGAGAGCCATGGACTTCGCCCGCTGCCCATCCGCCCCGG 477
consensus_2679#1      GACCCTCGAGGCCCTCACTGTTGAGAGCCATGGACTTCGCCCGCTGCCCATCCGCCCCGG 426
                      ************************************************************

consensus_2679#0      CGGCCGCCCGCTCGAACTCCGCCGCCGCCACCCGCTTCCTCCCGCCCTCCTCCGCCCCCA 537
consensus_2679#1      CGGCCGCCCGCTCGAACTCCGCCGCCGCCACCCGCTTCCTCCCGCCCTCCTCCGGCCCCA 486
                      ****************************************************** *****

consensus_2679#0      CCTCCTTCTCCCCGGCGCCCGCCGCCGCCGCCCCCGACGCCATCCCCCTCCGCGTCAGCT 597
consensus_2679#1      CCT--------------------------------------------------------- 489
                      ***                                                         

consensus_2679#0      CCTTCGCGAACAGCGACTCCGGCGCCTCCTCCCCCTCC 635
consensus_2679#1      --------------------------------------