cluster # 2691

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Oryza sativa
cluster # 2691 cluster # 2691 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2691#0 length = 818 sequences # 1

consensus_2691#1 length = 668 sequences # 1

consensusID : consensus_2691#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 818
fasta sequence

                              [GTCGGCCTCGCTGAAGTGAACCCGAACGGCTGTACGCCCTGTACCCCAATCCAAACCATTCTGCTGTTCTCTTCCCGTCGCCATGGCCATCTCCGCCGCCGCGGCAGCGGCAGCGGCGCTCTCGTTCCCCAGAGCGCTCCCCTCTCACTCCAACCTCGCCGCCACCGCCACCGCCGGCGCAGCGCGGAGCCACCCGCCTGCGCGCACTCCGAGCGCGGGGTCACCTTCGACCCGGGCTCCGCATTCTACCGCAGCGACAGCGCCGCGGGCCGCGACCTCGCCGTCCTCGCGGCCACCCTCCACCGCCGCGCCGCCGGCCCCTCCGCCCCGTTCCTCTGCCTCGACGCCATGTGCGGCTGCGGCGTCCGCGCGCTCCGCTACCTGGCGCAGGTCGGCGCCGACTTCGTCTGGGCCAACGACGCCTCCGAGGCGCTCCGCCCCGTCATCGTCGGCAACCTCTCCCGCTTCGAGCGGGCGCCGGACAGGAGGTGGGCGGTGTCGCACCTCGACGCCACCCGGCTGCTCTCGGAGCGCTACCTCCGCCGCGAGTACTTCGACGTCATCGACGTGGACTCGTTCGGCGGCGACGCCGCGTACATCAGGGCGGCGTTGCTGGCGCTCAGAATTGGGGGCCTACTGTATCTGACATCTACGGATTGGCGGTCCGCGAGAGGGTATGGCTCAAGAAGGTGAGTCCGTGGTCCATTTCGGCATGACACATCTCGGGTAGTATCATCCAATTTGTAATGCCTTCGCCTTAGCTTCTTAAAGCTTGTGCTAATTCATCAAGCATTTCTATCTTTTGTCAATTATTAGAA]

[+] EMBL AK108151             [GTCGGCCTCGCTGAAGTGAACCCGAACGGCTGTACGCCCTGTACCCCAATCCAAACCATTCTGCTGTTCTCTTCCCGTCGCCATGGCCATCTCCGCCGCCGCGGCAGCGGCAGCGGCGCTCTCGTTCCCCAGAGCGCTCCCCTCTCACTCCAACCTCGCCGCCACCGCCACCGCCGGCGCAGCGCGGAGCCACCCGCCTGCGCGCACTCCGAGCGCGGGGTCACCTTCGACCCGGGCTCCGCATTCTACCGCAGCGACAGCGCCGCGGGCCGCGACCTCGCCGTCCTCGCGGCCACCCTCCACCGCCGCGCCGCCGGCCCCTCCGCCCCGTTCCTCTGCCTCGACGCCATGTGCGGCTGCGGCGTCCGCGCGCTCCGCTACCTGGCGCAGGTCGGCGCCGACTTCGTCTGGGCCAACGACGCCTCCGAGGCGCTCCGCCCCGTCATCGTCGGCAACCTCTCCCGCTTCGAGCGGGCGCCGGACAGGAGGTGGGCGGTGTCGCACCTCGACGCCACCCGGCTGCTCTCGGAGCGCTACCTCCGCCGCGAGTACTTCGACGTCATCGACGTGGACTCGTTCGGCGGCGACGCCGCGTACATCAGGGCGGCGTTGCTGGCGCTCAGAATTGGGGGCCTACTGTATCTGACATCTACGGATTGGCGGTCCGCGAGAGGGTATGGCTCAAGAAGGTGAGTCCGTGGTCCATTTCGGCATGACACATCTCGGGTAGTATCATCCAATTTGTAATGCCTTCGCCTTAGCTTCTTAAAGCTTGTGCTAATTCATCAAGCATTTCTATCTTTTGTCAATTATTAGAA]




>consensus_2691#0
GTCGGCCTCGCTGAAGTGAACCCGAACGGCTGTACGCCCTGTACCCCAATCCAAACCATT
CTGCTGTTCTCTTCCCGTCGCCATGGCCATCTCCGCCGCCGCGGCAGCGGCAGCGGCGCT
CTCGTTCCCCAGAGCGCTCCCCTCTCACTCCAACCTCGCCGCCACCGCCACCGCCGGCGC
AGCGCGGAGCCACCCGCCTGCGCGCACTCCGAGCGCGGGGTCACCTTCGACCCGGGCTCC
GCATTCTACCGCAGCGACAGCGCCGCGGGCCGCGACCTCGCCGTCCTCGCGGCCACCCTC
CACCGCCGCGCCGCCGGCCCCTCCGCCCCGTTCCTCTGCCTCGACGCCATGTGCGGCTGC
GGCGTCCGCGCGCTCCGCTACCTGGCGCAGGTCGGCGCCGACTTCGTCTGGGCCAACGAC
GCCTCCGAGGCGCTCCGCCCCGTCATCGTCGGCAACCTCTCCCGCTTCGAGCGGGCGCCG
GACAGGAGGTGGGCGGTGTCGCACCTCGACGCCACCCGGCTGCTCTCGGAGCGCTACCTC
CGCCGCGAGTACTTCGACGTCATCGACGTGGACTCGTTCGGCGGCGACGCCGCGTACATC
AGGGCGGCGTTGCTGGCGCTCAGAATTGGGGGCCTACTGTATCTGACATCTACGGATTGG
CGGTCCGCGAGAGGGTATGGCTCAAGAAGGTGAGTCCGTGGTCCATTTCGGCATGACACA
TCTCGGGTAGTATCATCCAATTTGTAATGCCTTCGCCTTAGCTTCTTAAAGCTTGTGCTA
ATTCATCAAGCATTTCTATCTTTTGTCAATTATTAGAA

consensusID : consensus_2691#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 668
fasta sequence

                              [GCCATCTCCGCCGCCGCGGCAGCGGCAGCGGCGCTCTCGTTCCCCAGAGCGCTCCCCTCTCCACTCCAACCTCGCCGCCACCGCCACCGCCGGCGCAGCGCGGAGCCACCCGCCTGCGCGCACTCCGAGCGCGGGGTCACCTTCGACCCGGGCTCCGCATTCTACCGCAGCGACAGCGCCGCGGGCCGCGACCTCGCCGTCCTCGCGGCCACCCTCCACCGCCGCGCCGCCGGCCCCTCCGCCCCGTTCCTCTGCCTCGACGCCATGTGCGGCTGCGGCGTCCGCGCGCTCCGCTACCTGGCGCAGGTCGGCGCCGACTTCGTCTGGGCCAACGACGCCTCCGAGGCGCTCCGCCCCGTCATCGTCGGCAACCTCTCCCGCTTCGAGCGGGCGCCGGACAGGAGGTGGGCGGTGTCGCACCTCGACGCCACCCGGCTGCTCTCGGAGCGCTACCTCCGCCGCGAGTACTTCGACGTCATCGACGTGGACTCGTTCGGCGGCGACGCCGCGTACATCAGGGCGGCGTTGCTGGCGCTCAGAATTGGGGGCCTACTGTATCTGACATCTACGGATTGGCGGTCCGCGAGAGGGTATGGCTCAAGAAGGTGGTGCTGCACGGGAAGCTGCTATTCTGGGATTTCACATTACTCCATTGTTCTCATACTATG]

[+] EMBL CB681308             [GCCATCTCCGCCGCCGCGGCAGCGGCAGCGGCGCTCTCGTTCCCCAGAGCGCTCCCCTCTCCACTCCAACCTCGCCGCCACCGCCACCGCCGGCGCAGCGCGGAGCCACCCGCCTGCGCGCACTCCGAGCGCGGGGTCACCTTCGACCCGGGCTCCGCATTCTACCGCAGCGACAGCGCCGCGGGCCGCGACCTCGCCGTCCTCGCGGCCACCCTCCACCGCCGCGCCGCCGGCCCCTCCGCCCCGTTCCTCTGCCTCGACGCCATGTGCGGCTGCGGCGTCCGCGCGCTCCGCTACCTGGCGCAGGTCGGCGCCGACTTCGTCTGGGCCAACGACGCCTCCGAGGCGCTCCGCCCCGTCATCGTCGGCAACCTCTCCCGCTTCGAGCGGGCGCCGGACAGGAGGTGGGCGGTGTCGCACCTCGACGCCACCCGGCTGCTCTCGGAGCGCTACCTCCGCCGCGAGTACTTCGACGTCATCGACGTGGACTCGTTCGGCGGCGACGCCGCGTACATCAGGGCGGCGTTGCTGGCGCTCAGAATTGGGGGCCTACTGTATCTGACATCTACGGATTGGCGGTCCGCGAGAGGGTATGGCTCAAGAAGGTGGTGCTGCACGGGAAGCTGCTATTCTGGGATTTCACATTACTCCATTGTTCTCATACTATG]




>consensus_2691#1
GCCATCTCCGCCGCCGCGGCAGCGGCAGCGGCGCTCTCGTTCCCCAGAGCGCTCCCCTCT
CCACTCCAACCTCGCCGCCACCGCCACCGCCGGCGCAGCGCGGAGCCACCCGCCTGCGCG
CACTCCGAGCGCGGGGTCACCTTCGACCCGGGCTCCGCATTCTACCGCAGCGACAGCGCC
GCGGGCCGCGACCTCGCCGTCCTCGCGGCCACCCTCCACCGCCGCGCCGCCGGCCCCTCC
GCCCCGTTCCTCTGCCTCGACGCCATGTGCGGCTGCGGCGTCCGCGCGCTCCGCTACCTG
GCGCAGGTCGGCGCCGACTTCGTCTGGGCCAACGACGCCTCCGAGGCGCTCCGCCCCGTC
ATCGTCGGCAACCTCTCCCGCTTCGAGCGGGCGCCGGACAGGAGGTGGGCGGTGTCGCAC
CTCGACGCCACCCGGCTGCTCTCGGAGCGCTACCTCCGCCGCGAGTACTTCGACGTCATC
GACGTGGACTCGTTCGGCGGCGACGCCGCGTACATCAGGGCGGCGTTGCTGGCGCTCAGA
ATTGGGGGCCTACTGTATCTGACATCTACGGATTGGCGGTCCGCGAGAGGGTATGGCTCA
AGAAGGTGGTGCTGCACGGGAAGCTGCTATTCTGGGATTTCACATTACTCCATTGTTCTC
ATACTATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2691#0      GTCGGCCTCGCTGAAGTGAACCCGAACGGCTGTACGCCCTGTACCCCAATCCAAACCATT 60
consensus_2691#1      ------------------------------------------------------------
                                                                                  

consensus_2691#0      CTGCTGTTCTCTTCCCGTCGCCATGGCCATCTCCGCCGCCGCGGCAGCGGCAGCGGCGCT 120
consensus_2691#1      -------------------------GCCATCTCCGCCGCCGCGGCAGCGGCAGCGGCGCT 35
                                               ***********************************

consensus_2691#0      CTCGTTCCCCAGAGCGCTCCCCTCTC-ACTCCAACCTCGCCGCCACCGCCACCGCCGGCG 179
consensus_2691#1      CTCGTTCCCCAGAGCGCTCCCCTCTCCACTCCAACCTCGCCGCCACCGCCACCGCCGGCG 95
                      ************************** *********************************

consensus_2691#0      CAGCGCGGAGCCACCCGCCTGCGCGCACTCCGAGCGCGGGGTCACCTTCGACCCGGGCTC 239
consensus_2691#1      CAGCGCGGAGCCACCCGCCTGCGCGCACTCCGAGCGCGGGGTCACCTTCGACCCGGGCTC 155
                      ************************************************************

consensus_2691#0      CGCATTCTACCGCAGCGACAGCGCCGCGGGCCGCGACCTCGCCGTCCTCGCGGCCACCCT 299
consensus_2691#1      CGCATTCTACCGCAGCGACAGCGCCGCGGGCCGCGACCTCGCCGTCCTCGCGGCCACCCT 215
                      ************************************************************

consensus_2691#0      CCACCGCCGCGCCGCCGGCCCCTCCGCCCCGTTCCTCTGCCTCGACGCCATGTGCGGCTG 359
consensus_2691#1      CCACCGCCGCGCCGCCGGCCCCTCCGCCCCGTTCCTCTGCCTCGACGCCATGTGCGGCTG 275
                      ************************************************************

consensus_2691#0      CGGCGTCCGCGCGCTCCGCTACCTGGCGCAGGTCGGCGCCGACTTCGTCTGGGCCAACGA 419
consensus_2691#1      CGGCGTCCGCGCGCTCCGCTACCTGGCGCAGGTCGGCGCCGACTTCGTCTGGGCCAACGA 335
                      ************************************************************

consensus_2691#0      CGCCTCCGAGGCGCTCCGCCCCGTCATCGTCGGCAACCTCTCCCGCTTCGAGCGGGCGCC 479
consensus_2691#1      CGCCTCCGAGGCGCTCCGCCCCGTCATCGTCGGCAACCTCTCCCGCTTCGAGCGGGCGCC 395
                      ************************************************************

consensus_2691#0      GGACAGGAGGTGGGCGGTGTCGCACCTCGACGCCACCCGGCTGCTCTCGGAGCGCTACCT 539
consensus_2691#1      GGACAGGAGGTGGGCGGTGTCGCACCTCGACGCCACCCGGCTGCTCTCGGAGCGCTACCT 455
                      ************************************************************

consensus_2691#0      CCGCCGCGAGTACTTCGACGTCATCGACGTGGACTCGTTCGGCGGCGACGCCGCGTACAT 599
consensus_2691#1      CCGCCGCGAGTACTTCGACGTCATCGACGTGGACTCGTTCGGCGGCGACGCCGCGTACAT 515
                      ************************************************************

consensus_2691#0      CAGGGCGGCGTTGCTGGCGCTCAGAATTGGGGGCCTACTGTATCTGACATCTACGGATTG 659
consensus_2691#1      CAGGGCGGCGTTGCTGGCGCTCAGAATTGGGGGCCTACTGTATCTGACATCTACGGATTG 575
                      ************************************************************

consensus_2691#0      GCGGTCCGCGAGAGGGTATGGCTCAAGAAGGTGAGTCCGTGGTCCATTTCGGCATGACAC 719
consensus_2691#1      GCGGTCCGCGAGAGGGTATGGCTCAAGAAGGTG-----GTGCTGCA---CGGGAAGCTGC 627
                      *********************************     *** * **   *** * *   *

consensus_2691#0      ATCTCGGGTAGTATCATCCAATTTGTAATGCCTTCGCCTTAGCTTCTTAAAGCTTGTGCT 779
consensus_2691#1      TATTCTGG-GATTTCACATTACTC-CATTGTTCTCATACTATG----------------- 668
                         ** **   * ***    * *   * **   **    **                   

consensus_2691#0      AATTCATCAAGCATTTCTATCTTTTGTCAATTATTAGAA 818
consensus_2691#1      ---------------------------------------