|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2742#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1744 fasta sequence
[TAGATCATCTAAACAAGATAACGAATTATCATTAATCCCTGATTTACAGATGTTGTGGGCTTCCGATTGTCCAAAGTTGAAATTCCTGCCTTATCCACCAAGGAGCTTGACATGGTTCATAGAGAATAGCAATCACGTGTTGCCAGAACATGGGTTTGGGAACCTTACATCTGCTACTTATCCACTTCATCTTTCCATCGAGCGTGCACCCAATTCTCGCGAAATGTGGCGTAGGGCTCAGCACCTTTCTTCAATCGAGTCTCTTACTCTCATGTCTATAGCTGGCCTTAGAGCCCTGCCAGAGGCTATTCAGTGCTTCACGTCCCTCTGGAGACTCAGTATATTGGGATGTGGTGAGTTGGAGACGCTGCCGGAATGGCTAGGAGATTATTTCACTTGTCTGGAAGAGATTTCGATCGACACTTGCCCAATGCTGTCTTCACTGCCGGAAAGCATACGACGCCTCACTAAGCTGAAGAAGTTACGGATCACCAACTGCCCTGTATTGTCAGAGAAGTGCCAAGGAGAGGACAGGCACAAGATTGCTCATATTCTAGAGCCCATATTCCTGTAAAAGAAGCTCCCACCTAGATCAGCAGGCATACAGGCCGAGATGTAGCATGCATGGTTGGCTGATACTGTTAGCAGGGTAAGTTTACAAAACTTTTAAGGTAATATGAAAAACTATTTGATCTTTCACCAGCGGATCTATATTTGAACTAGAGGGCTGGGACCTCATACGTGCAGGCAATTGGACCGTAAAGCGAAAGCGGCTGCTTATGTACATATATTCCTCGACTACATATGCTGCTTGTGCCACTACCAGACTTCATACTTCAGAGCTATCCTGAGGGTGGTTATTTTTCCGTGATTTGTTGGTCACTTTTTGGCTATTGAAATACTTGGGCTGGTATAAGCATCATAAATTTCGCTTTTGCATCCAAAGAAGTTGTGCATTAACAGTAGCACCCGTTAATTTTCAGGAAATTAAGTGAGGTTACCTTGCCCAGGCTCTGCTAGTAGCAAAGAATCTTGAGACTTATTGATTAAAGGTTCTTGTAACAGCAAACTGGAGATCTAAACCACTGGATTTCCGTTGGCACTTGTCTCTCTTGAAGAAACGAAAGGGTTGGCTCAGTTGTCGTTCATCACTCTCAGTGGCTGCTTACCAGGCTGGATTAAATCTCGATATCTGTTTGTCAGTAAGACAAGTTAGCAGATGGTACATCTGCTTGTGTGTAATCACATCATTAATGTCAGCAATGAATATCTGATACCCAAGAGGCACCTGTATGAAAAAAGAATATACATATCTTGTCGACTGCAATGTTGCAAACACATCCATGAAAAGATGCTCTGAGTGATCCTGAACTGGATGTAACATAACGGTGCTTTCTCAGAAAGAAAATGAGAGAGAGGAAGATCCTGAGCCTGGCAAGAACAGCTATGCAACTGTGCAAGTACAAGCCTTGAAATCTTGAAAGGTACATCCTGTCGATTTCACTCCTTTTTGCCCTGTATTCATGAGCCGTGAAGAGGAGACATCTCATTGCAATCCTGAATTTTGGGAGTGTGTGTGGCAGGTGCTCAATTTGTTTGGTCTTTGTCCTATGAGGTTTAGGTTAGGTTCCTGGCTCTTCAACTTTGACCTGTCTGTATGAGGGCAGGTCAGCTGGAATTTCTTGGAATTTTTGCAAGTTGTGTACTTCACTTGTACTACCGAATCAGCCAAATTTTAAGCAGT]
[+] EMBL AK105844 [TAGATCATCTAAACAAGATAACGAATTATCATTAATCCCTGATTTACAGATGTTGTGGGCTTCCGATTGTCCAAAGTTGAAATTCCTGCCTTATCCACCAAGGAGCTTGACATGGTTCATAGAGAATAGCAATCACGTGTTGCCAGAACATGGGTTTGGGAACCTTACATCTGCTACTTATCCACTTCATCTTTCCATCGAGCGTGCACCCAATTCTCGCGAAATGTGGCGTAGGGCTCAGCACCTTTCTTCAATCGAGTCTCTTACTCTCATGTCTATAGCTGGCCTTAGAGCCCTGCCAGAGGCTATTCAGTGCTTCACGTCCCTCTGGAGACTCAGTATATTGGGATGTGGTGAGTTGGAGACGCTGCCGGAATGGCTAGGAGATTATTTCACTTGTCTGGAAGAGATTTCGATCGACACTTGCCCAATGCTGTCTTCACTGCCGGAAAGCATACGACGCCTCACTAAGCTGAAGAAGTTACGGATCACCAACTGCCCTGTATTGTCAGAGAAGTGCCAAGGAGAGGACAGGCACAAGATTGCTCATATTCTAGAGCCCATATTCCTGTAAAAGAAGCTCCCACCTAGATCAGCAGGCATACAGGCCGAGATGTAGCATGCATGGTTGGCTGATACTGTTAGCAGGGTAAGTTTACAAAACTTTTAAGGTAATATGAAAAACTATTTGATCTTTCACCAGCGGATCTATATTTGAACTAGAGGGCTGGGACCTCATACGTGCAGGCAATTGGACCGTAAAGCGAAAGCGGCTGCTTATGTACATATATTCCTCGACTACATATGCTGCTTGTGCCACTACCAGACTTCATACTTCAGAGCTATCCTGAGGGTGGTTATTTTTCCGTGATTTGTTGGTCACTTTTTGGCTATTGAAATACTTGGGCTGGTATAAGCATCATAAATTTCGCTTTTGCATCCAAAGAAGTTGTGCATTAACAGTAGCACCCGTTAATTTTCAGGAAATTAAGTGAGGTTACCTTGCCCAGGCTCTGCTAGTAGCAAAGAATCTTGAGACTTATTGATTAAAGGTTCTTGTAACAGCAAACTGGAGATCTAAACCACTGGATTTCCGTTGGCACTTGTCTCTCTTGAAGAAACGAAAGGGTTGGCTCAGTTGTCGTTCATCACTCTCAGTGGCTGCTTACCAGGCTGGATTAAATCTCGATATCTGTTTGTCAGTAAGACAAGTTAGCAGATGGTACATCTGCTTGTGTGTAATCACATCATTAATGTCAGCAATGAATATCTGATACCCAAGAGGCACCTGTATGAAAAAAGAATATACATATCTTGTCGACTGCAATGTTGCAAACACATCCATGAAAAGATGCTCTGAGTGATCCTGAACTGGATGTAACATAACGGTGCTTTCTCAGAAAGAAAATGAGAGAGAGGAAGATCCTGAGCCTGGCAAGAACAGCTATGCAACTGTGCAAGTACAAGCCTTGAAATCTTGAAAGGTACATCCTGTCGATTTCACTCCTTTTTGCCCTGTATTCATGAGCCGTGAAGAGGAGACATCTCATTGCAATCCTGAATTTTGGGAGTGTGTGTGGCAGGTGCTCAATTTGTTTGGTCTTTGTCCTATGAGGTTTAGGTTAGGTTCCTGGCTCTTCAACTTTGACCTGTCTGTATGAGGGCAGGTCAGCTGGAATTTCTTGGAATTTTTGCAAGTTGTGTACTTCACTTGTACTACCGAATCAGCCAAATTTTAAGCAGT]
consensusID : consensus_2742#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[AAGCGAAAGCGGCTGCTTATGTACATATATTCCTCGACTACATATGCTGCTTGTGCCACTACCAGACTTCATACTTTAGAGCTATCCTGAGGGTGGTTATTTTTCCGTGATTTGTTGGTCACTTTTTGGCTATTGAAATACTTGGGCTGGTATAAGCATCATAAATTTCGCTTTTGCATCCAAAGAAGTTGTGCATTAACAGTAGCACCCGTTAATTTTCAGGAAATTAAGTGAGGTTACCTTGCCCAGGCTTTGCTAGTAGCAAAGAATCTTGAGACTTATTGATTAAAGGTTCTTGTAACAGCAAACTGGAGATCTAAACCACTGGATTTCCGTTGGCACTTGTCTCTCTTGAAGAAACGAAAGGGTTGGCTCAGTTGTCGTTCATCACTCTCAGTGGCTGCTTACCAGGTTGGATTAAATCTCGATATCTGTTTGTCAGTAAGACAAGTTAGCAGATGGGTAAGCATGATGCCCATTTCCTTTTTATTTTCACGCAGATATGCTTCTTGAGTTGTTGCTGTGTTGTGTTCTTAGTATGTTGTATCTGCCCAAGTATATGATGATGGTGTGAATAGTAATGAACAAAGTGCATATACCTTGTAAACAGAGATTTTCTGGCCCATTGTAATGGTTGTGATAATCATTTATGCATTTGTTCGTTGGCAACTGAACAGTAAAAAAAAAAAAAAA]
[-] EMBL CA763558 [AAGCGAAAGCGGCTGCTTATGTACATATATTCCTCGACTACATATGCTGCTTGTGCCACTACCAGACTTCATACTTTAGAGCTATCCTGAGGGTGGTTATTTTTCCGTGATTTGTTGGTCACTTTTTGGCTATTGAAATACTTGGGCTGGTATAAGCATCATAAATTTCGCTTTTGCATCCAAAGAAGTTGTGCATTAACAGTAGCACCCGTTAATTTTCAGGAAATTAAGTGAGGTTACCTTGCCCAGGCTTTGCTAGTAGCAAAGAATCTTGAGACTTATTGATTAAAGGTTCTTGTAACAGCAAACTGGAGATCTAAACCACTGGATTTCCGTTGGCACTTGTCTCTCTTGAAGAAACGAAAGGGTTGGCTCAGTTGTCGTTCATCACTCTCAGTGGCTGCTTACCAGGTTGGATTAAATCTCGATATCTGTTTGTCAGTAAGACAAGTTAGCAGATGGGTAAGCATGATGCCCATTTCCTTTTTATTTTCACGCAGATATGCTTCTTGAGTTGTTGCTGTGTTGTGTTCTTAGTATGTTGTATCTGCCCAAGTATATGATGATGGTGTGAATAGTAATGAACAAAGTGCATATACCTTGTAAACAGAGATTTTCTGGCCCATTGTAATGGTTGTGATAATCATTTATGCATTTGTTCGTTGGCAACTGAACAGTAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2742#0 TAGATCATCTAAACAAGATAACGAATTATCATTAATCCCTGATTTACAGATGTTGTGGGC 60
consensus_2742#1 ------------------------------------------------------------
consensus_2742#0 TTCCGATTGTCCAAAGTTGAAATTCCTGCCTTATCCACCAAGGAGCTTGACATGGTTCAT 120
consensus_2742#1 ------------------------------------------------------------
consensus_2742#0 AGAGAATAGCAATCACGTGTTGCCAGAACATGGGTTTGGGAACCTTACATCTGCTACTTA 180
consensus_2742#1 ------------------------------------------------------------
consensus_2742#0 TCCACTTCATCTTTCCATCGAGCGTGCACCCAATTCTCGCGAAATGTGGCGTAGGGCTCA 240
consensus_2742#1 ------------------------------------------------------------
consensus_2742#0 GCACCTTTCTTCAATCGAGTCTCTTACTCTCATGTCTATAGCTGGCCTTAGAGCCCTGCC 300
consensus_2742#1 ------------------------------------------------------------
consensus_2742#0 AGAGGCTATTCAGTGCTTCACGTCCCTCTGGAGACTCAGTATATTGGGATGTGGTGAGTT 360
consensus_2742#1 ------------------------------------------------------------
consensus_2742#0 GGAGACGCTGCCGGAATGGCTAGGAGATTATTTCACTTGTCTGGAAGAGATTTCGATCGA 420
consensus_2742#1 ------------------------------------------------------------
consensus_2742#0 CACTTGCCCAATGCTGTCTTCACTGCCGGAAAGCATACGACGCCTCACTAAGCTGAAGAA 480
consensus_2742#1 ------------------------------------------------------------
consensus_2742#0 GTTACGGATCACCAACTGCCCTGTATTGTCAGAGAAGTGCCAAGGAGAGGACAGGCACAA 540
consensus_2742#1 ------------------------------------------------------------
consensus_2742#0 GATTGCTCATATTCTAGAGCCCATATTCCTGTAAAAGAAGCTCCCACCTAGATCAGCAGG 600
consensus_2742#1 ------------------------------------------------------------
consensus_2742#0 CATACAGGCCGAGATGTAGCATGCATGGTTGGCTGATACTGTTAGCAGGGTAAGTTTACA 660
consensus_2742#1 ------------------------------------------------------------
consensus_2742#0 AAACTTTTAAGGTAATATGAAAAACTATTTGATCTTTCACCAGCGGATCTATATTTGAAC 720
consensus_2742#1 ------------------------------------------------------------
consensus_2742#0 TAGAGGGCTGGGACCTCATACGTGCAGGCAATTGGACCGTAAAGCGAAAGCGGCTGCTTA 780
consensus_2742#1 -----------------------------------------AAGCGAAAGCGGCTGCTTA 19
*******************
consensus_2742#0 TGTACATATATTCCTCGACTACATATGCTGCTTGTGCCACTACCAGACTTCATACTTCAG 840
consensus_2742#1 TGTACATATATTCCTCGACTACATATGCTGCTTGTGCCACTACCAGACTTCATACTTTAG 79
********************************************************* **
consensus_2742#0 AGCTATCCTGAGGGTGGTTATTTTTCCGTGATTTGTTGGTCACTTTTTGGCTATTGAAAT 900
consensus_2742#1 AGCTATCCTGAGGGTGGTTATTTTTCCGTGATTTGTTGGTCACTTTTTGGCTATTGAAAT 139
************************************************************
consensus_2742#0 ACTTGGGCTGGTATAAGCATCATAAATTTCGCTTTTGCATCCAAAGAAGTTGTGCATTAA 960
consensus_2742#1 ACTTGGGCTGGTATAAGCATCATAAATTTCGCTTTTGCATCCAAAGAAGTTGTGCATTAA 199
************************************************************
consensus_2742#0 CAGTAGCACCCGTTAATTTTCAGGAAATTAAGTGAGGTTACCTTGCCCAGGCTCTGCTAG 1020
consensus_2742#1 CAGTAGCACCCGTTAATTTTCAGGAAATTAAGTGAGGTTACCTTGCCCAGGCTTTGCTAG 259
***************************************************** ******
consensus_2742#0 TAGCAAAGAATCTTGAGACTTATTGATTAAAGGTTCTTGTAACAGCAAACTGGAGATCTA 1080
consensus_2742#1 TAGCAAAGAATCTTGAGACTTATTGATTAAAGGTTCTTGTAACAGCAAACTGGAGATCTA 319
************************************************************
consensus_2742#0 AACCACTGGATTTCCGTTGGCACTTGTCTCTCTTGAAGAAACGAAAGGGTTGGCTCAGTT 1140
consensus_2742#1 AACCACTGGATTTCCGTTGGCACTTGTCTCTCTTGAAGAAACGAAAGGGTTGGCTCAGTT 379
************************************************************
consensus_2742#0 GTCGTTCATCACTCTCAGTGGCTGCTTACCAGGCTGGATTAAATCTCGATATCTGTTTGT 1200
consensus_2742#1 GTCGTTCATCACTCTCAGTGGCTGCTTACCAGGTTGGATTAAATCTCGATATCTGTTTGT 439
********************************* **************************
consensus_2742#0 CAGTAAGACAAGTTAGCAGATGGTACATCTGCTTGTGTGTAATCACATCATTAATGTCAG 1260
consensus_2742#1 CAGTAAGACAAGTTAGCAGATGG---GTAAGCATGATGCCCATTTCCTTTTTATTTTCA- 495
*********************** * ** ** ** * * *** * ***
consensus_2742#0 CAATGAATATCTGATACCCAAGAGGCACCTGTATGAAAAAAGAATATACATATCTTGTCG 1320
consensus_2742#1 ---CGCAGATATGCTTCTTGAGTTGTTGCTGTGT------------TGTGTTCTTAGTAT 540
* * ** ** * * ** * **** * * * * **
consensus_2742#0 ACTGCAATGTTGCAAACACATCCATGAAAAGATGCTCTGAGTGATCCTGAACTGGATGTA 1380
consensus_2742#1 GTTGTATCTGCCCAAGTATAT------GATGATGGTGTGAATAGTAATGAACAAAGTG-- 592
** * *** * ** * **** * *** * * ***** **
consensus_2742#0 ACATAACGGTGCTTTCTCAGAAAGAAAATGAGAGAGAGGAAGATCCTGAGCCTGGCAAGA 1440
consensus_2742#1 -CATA----TACCTTGT--AAACAGAGATTTTCTGGCCCATTGTAATGGTTGTGATAA-- 643
**** * * ** * ** * ** * * * ** ** **
consensus_2742#0 ACAGCTATGCAACTGTGCAAGTACAAGCCTTGAAATCTTGAAAGGTACATCCTGTCGATT 1500
consensus_2742#1 TCATTTATGCATTTGTTCGTTGGCAA---CTGAACAGTAAAAAAAAAAAAAAA------- 693
** ****** *** * *** **** * *** * *
consensus_2742#0 TCACTCCTTTTTGCCCTGTATTCATGAGCCGTGAAGAGGAGACATCTCATTGCAATCCTG 1560
consensus_2742#1 ------------------------------------------------------------
consensus_2742#0 AATTTTGGGAGTGTGTGTGGCAGGTGCTCAATTTGTTTGGTCTTTGTCCTATGAGGTTTA 1620
consensus_2742#1 ------------------------------------------------------------
consensus_2742#0 GGTTAGGTTCCTGGCTCTTCAACTTTGACCTGTCTGTATGAGGGCAGGTCAGCTGGAATT 1680
consensus_2742#1 ------------------------------------------------------------
consensus_2742#0 TCTTGGAATTTTTGCAAGTTGTGTACTTCACTTGTACTACCGAATCAGCCAAATTTTAAG 1740
consensus_2742#1 ------------------------------------------------------------
consensus_2742#0 CAGT 1744
consensus_2742#1 ----
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||