cluster # 2747

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Oryza sativa
cluster # 2747 cluster # 2747 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2747#0 length = 540 sequences # 1

consensus_2747#1 length = 514 sequences # 1

consensusID : consensus_2747#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence

                              [CATCATAGTAATTGATTATACTTCATTACTCGCAATTGCAGGAACACCACTTTTTACACATGGTATGACATGGAATTGAGGGGAGTTTTGCTCCATGGAAAGCTGCCTTAAAACATGTAGCTTCATCAGAGCTCCCACGCAATTCAGAATTAGCCTAAAATAATCAAGAAGCAGTAGCACTAGTACATTGATTAAGTATATACTACATATATATATGTAGATAATAGTTATGAATTGAATGATTATATGATTATTATTGTACCGTGGCCAATTCTTGGTCACGTACTGATATATCAGTCAGTAATTGAATTTGCGCTTAATGGTGATCACTGGAGAGTGTGGAGGCTTCGATCGATCGATCACCTCCATGGATTTGGTCTCCATCGATCTCCGGTTCGATCGATCAGTTGAGGGAGGAGAAGCTCCAGAGGCTGATCTCACCTTCGTCCTCCCACTCGGCGGCGAGGGACTCCGGCGCCGGCGAGAAGAACGTGCTGCATGGGTCCATCATGGAGTAGTCCATGCACTTGGGCGACTGGA]

[+] EMBL CB684402             [CATCATAGTAATTGATTATACTTCATTACTCGCAATTGCAGGAACACCACTTTTTACACATGGTATGACATGGAATTGAGGGGAGTTTTGCTCCATGGAAAGCTGCCTTAAAACATGTAGCTTCATCAGAGCTCCCACGCAATTCAGAATTAGCCTAAAATAATCAAGAAGCAGTAGCACTAGTACATTGATTAAGTATATACTACATATATATATGTAGATAATAGTTATGAATTGAATGATTATATGATTATTATTGTACCGTGGCCAATTCTTGGTCACGTACTGATATATCAGTCAGTAATTGAATTTGCGCTTAATGGTGATCACTGGAGAGTGTGGAGGCTTCGATCGATCGATCACCTCCATGGATTTGGTCTCCATCGATCTCCGGTTCGATCGATCAGTTGAGGGAGGAGAAGCTCCAGAGGCTGATCTCACCTTCGTCCTCCCACTCGGCGGCGAGGGACTCCGGCGCCGGCGAGAAGAACGTGCTGCATGGGTCCATCATGGAGTAGTCCATGCACTTGGGCGACTGGA]




>consensus_2747#0
CATCATAGTAATTGATTATACTTCATTACTCGCAATTGCAGGAACACCACTTTTTACACA
TGGTATGACATGGAATTGAGGGGAGTTTTGCTCCATGGAAAGCTGCCTTAAAACATGTAG
CTTCATCAGAGCTCCCACGCAATTCAGAATTAGCCTAAAATAATCAAGAAGCAGTAGCAC
TAGTACATTGATTAAGTATATACTACATATATATATGTAGATAATAGTTATGAATTGAAT
GATTATATGATTATTATTGTACCGTGGCCAATTCTTGGTCACGTACTGATATATCAGTCA
GTAATTGAATTTGCGCTTAATGGTGATCACTGGAGAGTGTGGAGGCTTCGATCGATCGAT
CACCTCCATGGATTTGGTCTCCATCGATCTCCGGTTCGATCGATCAGTTGAGGGAGGAGA
AGCTCCAGAGGCTGATCTCACCTTCGTCCTCCCACTCGGCGGCGAGGGACTCCGGCGCCG
GCGAGAAGAACGTGCTGCATGGGTCCATCATGGAGTAGTCCATGCACTTGGGCGACTGGA

consensusID : consensus_2747#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence

                              [ACTACTCTCAGTTGTTGCAGCCGTCTTCTTTGCAGTTTGGTCCGAACCATCGCCATCTCCATCTCCATCGAACGATCACACGTCGGAGTATCAGAGGTGAGCGGCGGCGGCGTCGGAGGAGGAGGAGGAGCAATGGTGAAGAGTGGGCAGGAGGCGGCGCCGGGGATCAGTATATACTACATATATATATGTAGATAATAGTTATGAATTGAATGATTATATGATTATTATTGTACCGGGGCCAATTCTTGGTCACGTACTGATATATCAGTCAGTAATTGAATTTGCGCTTAATGGTGATCACTGGAGAGTGTGGAGGCTTCGATCGATCGATCACCTCCATGGATTTGGTCTCCATCGATCTCCGGTTCGATCGATCAGTTGAGGGAGGAGAAGCTCCAGAGGCTGATCTCACCTTCGTCCTCCCACTCGGCGGCGAGGGACTCCGGCGCCGGCGAGAAGAACGTGCTGCATGGGTCCATCATGGAGTAGTCCATGCACTTGGGCGACTGGA]

[+] EMBL CB684401             [ACTACTCTCAGTTGTTGCAGCCGTCTTCTTTGCAGTTTGGTCCGAACCATCGCCATCTCCATCTCCATCGAACGATCACACGTCGGAGTATCAGAGGTGAGCGGCGGCGGCGTCGGAGGAGGAGGAGGAGCAATGGTGAAGAGTGGGCAGGAGGCGGCGCCGGGGATCAGTATATACTACATATATATATGTAGATAATAGTTATGAATTGAATGATTATATGATTATTATTGTACCGGGGCCAATTCTTGGTCACGTACTGATATATCAGTCAGTAATTGAATTTGCGCTTAATGGTGATCACTGGAGAGTGTGGAGGCTTCGATCGATCGATCACCTCCATGGATTTGGTCTCCATCGATCTCCGGTTCGATCGATCAGTTGAGGGAGGAGAAGCTCCAGAGGCTGATCTCACCTTCGTCCTCCCACTCGGCGGCGAGGGACTCCGGCGCCGGCGAGAAGAACGTGCTGCATGGGTCCATCATGGAGTAGTCCATGCACTTGGGCGACTGGA]




>consensus_2747#1
ACTACTCTCAGTTGTTGCAGCCGTCTTCTTTGCAGTTTGGTCCGAACCATCGCCATCTCC
ATCTCCATCGAACGATCACACGTCGGAGTATCAGAGGTGAGCGGCGGCGGCGTCGGAGGA
GGAGGAGGAGCAATGGTGAAGAGTGGGCAGGAGGCGGCGCCGGGGATCAGTATATACTAC
ATATATATATGTAGATAATAGTTATGAATTGAATGATTATATGATTATTATTGTACCGGG
GCCAATTCTTGGTCACGTACTGATATATCAGTCAGTAATTGAATTTGCGCTTAATGGTGA
TCACTGGAGAGTGTGGAGGCTTCGATCGATCGATCACCTCCATGGATTTGGTCTCCATCG
ATCTCCGGTTCGATCGATCAGTTGAGGGAGGAGAAGCTCCAGAGGCTGATCTCACCTTCG
TCCTCCCACTCGGCGGCGAGGGACTCCGGCGCCGGCGAGAAGAACGTGCTGCATGGGTCC
ATCATGGAGTAGTCCATGCACTTGGGCGACTGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2747#0      CATCATAGTAATTGATTATACTTCATTACTCGCAATTGCAGGAACACCACTTTTTACACA 60
consensus_2747#1      ------------------------ACTACTCTCAGTTGTTGCAGCCGTCTTCTTTGCA-- 34
                                              * ***** ** ***  * * *     * *** **  

consensus_2747#0      TGGTATGACATGGAATTGAGGGGAGTTTTGCTCCATGGAAAGCT---GCCTTAAAACATG 117
consensus_2747#1      --GTTTGGTCCGAACCATCGCCATCTCCATCTCCATCGAACGATCACACGTCGGAGTATC 92
                        ** **    * *     *     *    ****** *** * *    * *   *  ** 

consensus_2747#0      TAGCTTCATCAGAGCTCCCACGCAATTCAGAATTAGCCTAAAATAATCAAGAAGCAGTAG 177
consensus_2747#1      AGAGGTGAGCGGCGGCGGCGTCGGAGGAGGAGGAGG--AGCAATGGTGAAGAGTGGGCAG 150
                           * * * * *    *     *    **    *     ***  * ****    * **

consensus_2747#0      CAC-TAGTACATTGATTAAGTATATACTACATATATATATGTAGATAATAGTTATGAATT 236
consensus_2747#1      GAGGCGGCGCCGGGGATCAGTATATACTACATATATATATGTAGATAATAGTTATGAATT 210
                       *    *  *   *  * ******************************************

consensus_2747#0      GAATGATTATATGATTATTATTGTACCGTGGCCAATTCTTGGTCACGTACTGATATATCA 296
consensus_2747#1      GAATGATTATATGATTATTATTGTACCGGGGCCAATTCTTGGTCACGTACTGATATATCA 270
                      **************************** *******************************

consensus_2747#0      GTCAGTAATTGAATTTGCGCTTAATGGTGATCACTGGAGAGTGTGGAGGCTTCGATCGAT 356
consensus_2747#1      GTCAGTAATTGAATTTGCGCTTAATGGTGATCACTGGAGAGTGTGGAGGCTTCGATCGAT 330
                      ************************************************************

consensus_2747#0      CGATCACCTCCATGGATTTGGTCTCCATCGATCTCCGGTTCGATCGATCAGTTGAGGGAG 416
consensus_2747#1      CGATCACCTCCATGGATTTGGTCTCCATCGATCTCCGGTTCGATCGATCAGTTGAGGGAG 390
                      ************************************************************

consensus_2747#0      GAGAAGCTCCAGAGGCTGATCTCACCTTCGTCCTCCCACTCGGCGGCGAGGGACTCCGGC 476
consensus_2747#1      GAGAAGCTCCAGAGGCTGATCTCACCTTCGTCCTCCCACTCGGCGGCGAGGGACTCCGGC 450
                      ************************************************************

consensus_2747#0      GCCGGCGAGAAGAACGTGCTGCATGGGTCCATCATGGAGTAGTCCATGCACTTGGGCGAC 536
consensus_2747#1      GCCGGCGAGAAGAACGTGCTGCATGGGTCCATCATGGAGTAGTCCATGCACTTGGGCGAC 510
                      ************************************************************

consensus_2747#0      TGGA 540
consensus_2747#1      TGGA 514
                      ****