cluster # 2748

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Oryza sativa
cluster # 2748 cluster # 2748 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2748#0 length = 402 sequences # 1

consensus_2748#1 length = 323 sequences # 1

consensusID : consensus_2748#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 402
fasta sequence

                              [CAGCGCACACAGGGCAAGCAGCAGGAGGCAGGCAGCAGGTGGCAGGTGGCACAGATTCATTGCACAGTAGTGTAGGGAGGATGGTTGTGTCCCATGACAGGGTGGGGCACACAGGTCAGGTGTGGGTATTGAGCATGCATCACATTTCACAACACCATGGCCACAACAATGTCAAGTAGAGAGAGAGCTCTTGAAAAAGTTTTCTTCAGAAAAAGAAATGGAAAGGAGAATAATTAGAACTTGTGAATGAATTGTGATTCTTTTTTTTACACCTTTTTGGGTTCCATTCCAGCTTCTGTCGGGGGCATGACATCACATACACGTCGTTGTTGATTAATCTTAAAAAAAAAAATTATATCATTATGTTGGGGTAAAAAAAAAAGATTTTTACTAAAAAAAAAA]

[+] EMBL BI802316             [CAGCGCACACAGGGCAAGCAGCAGGAGGCAGGCAGCAGGTGGCAGGTGGCACAGATTCATTGCACAGTAGTGTAGGGAGGATGGTTGTGTCCCATGACAGGGTGGGGCACACAGGTCAGGTGTGGGTATTGAGCATGCATCACATTTCACAACACCATGGCCACAACAATGTCAAGTAGAGAGAGAGCTCTTGAAAAAGTTTTCTTCAGAAAAAGAAATGGAAAGGAGAATAATTAGAACTTGTGAATGAATTGTGATTCTTTTTTTTACACCTTTTTGGGTTCCATTCCAGCTTCTGTCGGGGGCATGACATCACATACACGTCGTTGTTGATTAATCTTAAAAAAAAAAATTATATCATTATGTTGGGGTAAAAAAAAAAGATTTTTACTAAAAAAAAAA]




>consensus_2748#0
CAGCGCACACAGGGCAAGCAGCAGGAGGCAGGCAGCAGGTGGCAGGTGGCACAGATTCAT
TGCACAGTAGTGTAGGGAGGATGGTTGTGTCCCATGACAGGGTGGGGCACACAGGTCAGG
TGTGGGTATTGAGCATGCATCACATTTCACAACACCATGGCCACAACAATGTCAAGTAGA
GAGAGAGCTCTTGAAAAAGTTTTCTTCAGAAAAAGAAATGGAAAGGAGAATAATTAGAAC
TTGTGAATGAATTGTGATTCTTTTTTTTACACCTTTTTGGGTTCCATTCCAGCTTCTGTC
GGGGGCATGACATCACATACACGTCGTTGTTGATTAATCTTAAAAAAAAAAATTATATCA
TTATGTTGGGGTAAAAAAAAAAGATTTTTACTAAAAAAAAAA

consensusID : consensus_2748#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [CTCCTCCTGCCGCCGCCCCATCGTCCTCGACGACCCCTCGCCGCCCAAGCGCTGCCGCAAGTGCGAGGCCATAGTCCTCGAGGCCGTCGTCGCCGCCTCCTCCTCCTCCTCCTCCTCCGCCGCCACCGCCACCGGCAGCGGCGGAGGCGGCGGCGGTGGCGGTGGCCGATTCTTGCCGTAGTGTAGGGAGGATGGTTGTGTCCCTGACGGGTGGGGCCCAGGTCGGTGTGGGTAGTTGAGCTGCTCCTTTCCACCCATGGCCCACATGTCAGTAGAGAGAGAGCTCTTGAAAAAGTTTTCTTCAGAAAAAGAAATGGAAAGGA]

[+] EMBL AK063094             [CTCCTCCTGCCGCCGCCCCATCGTCCTCGACGACCCCTCGCCGCCCAAGCGCTGCCGCAAGTGCGAGGCCATAGTCCTCGAGGCCGTCGTCGCCGCCTCCTCCTCCTCCTCCTCCTCCGCCGCCACCGCCACCGGCAGCGGCGGAGGCGGCGGCGGTGGCGGTGGCCGATTCTTGCCGTAGTGTAGGGAGGATGGTTGTGTCCCTGACGGGTGGGGCCCAGGTCGGTGTGGGTAGTTGAGCTGCTCCTTTCCACCCATGGCCCACATGTCAGTAGAGAGAGAGCTCTTGAAAAAGTTTTCTTCAGAAAAAGAAATGGAAAGGA]




>consensus_2748#1
CTCCTCCTGCCGCCGCCCCATCGTCCTCGACGACCCCTCGCCGCCCAAGCGCTGCCGCAA
GTGCGAGGCCATAGTCCTCGAGGCCGTCGTCGCCGCCTCCTCCTCCTCCTCCTCCTCCGC
CGCCACCGCCACCGGCAGCGGCGGAGGCGGCGGCGGTGGCGGTGGCCGATTCTTGCCGTA
GTGTAGGGAGGATGGTTGTGTCCCTGACGGGTGGGGCCCAGGTCGGTGTGGGTAGTTGAG
CTGCTCCTTTCCACCCATGGCCCACATGTCAGTAGAGAGAGAGCTCTTGAAAAAGTTTTC
TTCAGAAAAAGAAATGGAAAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2748#0      CAGCGCACACAGGGCAAGCAGCAGGAGGCAGGCAGCAGGTGGCAGGTGGCACAGATTCAT 60
consensus_2748#1      ---------------------------------CTCCTCCTGCCGCCGCCCCATCGTCCT 27
                                                         *     ** *  * * **   ** *

consensus_2748#0      TGCACAGTAGTGTAGGGAGGATGGTTGTGTCCCATGACAGGGTGGGGCACACAGGTCAGG 120
consensus_2748#1      CGACGACCCCTCGCCGCCCAAGCGCTGCCGCAAGTGCGAGGCCATAGTCCTCGAGGCCGT 87
                       *   *    *    *    *  * **   *   **  ***     *  * *  * * * 

consensus_2748#0      TGTGGGTAT-TGAGCATGCATCACATTTCACAACACCATGGCCAC-AACAATGTCAAGTA 178
consensus_2748#1      CGTCGCCGCCTCCTCCTCCTCCTCCTCCTCCGCCGCCACCGCCACCGGCAGCGGCGGAGG 147
                       ** *     *   * * *  * * *    *  * ***  *****   **  * *     

consensus_2748#0      GAGAGAGAGCTCTTGAAAAAGTTTTCTTCAGAAAAAGAAATGGAAAGGAGAATAATTAGA 238
consensus_2748#1      CGGCGGCGGTGGCGGTGGCCGATTCTTGCCGTAGT-------GTAGGGAGGATGGTT-GT 199
                        * *   *     *     * **  * * * *         * * **** **  ** * 

consensus_2748#0      ACTTGTGAATGAATTGTGATTCTTTTTTTTACACCTTTTTGGGTTCCATTCCAGCTTCTG 298
consensus_2748#1      GTCCCTGACGGG--TGGGGCCCAGGTCGGTGTGGGTAGTTGAGCTGCTCCTTTCCACCCA 257
                           ***  *   ** *   *   *   *     *  *** * * *       *  *  

consensus_2748#0      TCGGGGGCATGACATCACATACACGTCGTTGTTGATTAATCTTAAAAAAAAAAATTATAT 358
consensus_2748#1      TGGCCCACATGTCAGTAGAGAGAGA--GCTCTTGAAAAAGTTTTCTTCAGAAAAAGAAAT 315
                      * *    **** **  * * * *    * * ****  **  **     * ****  * **

consensus_2748#0      CATTATGTTGGGGTAAAAAAAAAAGATTTTTACTAAAAAAAAAA 402
consensus_2748#1      GGAAAGGA------------------------------------ 323
                          * *