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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2787#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1039 fasta sequence
[TTCCAATCGCAGCTGCCTCCCATGGCGACCACCGCCTCCCTCCTCCCTCCTCTCCTCCCGGCCCCTTCCTCCTCCCCCCGCCACCTCCACCCCTCCCCTCGCCACCTCCGCCCCTTGCCACCGATCCGCCTCCTCCGCGCCGCCCGCCGCCGCCACCCCGACGCCGTCGTCGTCGTCCCGGACGCCCGCCCCTGGGTCGGCGACCTCTCGGGCGCCGCCGCGTCCTACCGGGACGGCAGGGAAGAGGACGACGACGACGCGGGGGAGGAGGATGACGAAAACGACGACGACGACGAGGACCGCAGCCTGGACCTCCTGGTCCGCTTCCTGCACTCGGTGTTCAGGAAGGTCTCCCGCCGCGCGCGCCGCGCCGCCAGGTGAAGTTCTCGGTCAACGGCGTGCTTGTTCTCACGTTTCTATGGGTCCTAAAGGGGCTACTTGAGGTGGTGTGCACATTTGGAAGTATGGTGTTCGTGACCATCCTTCTTGTTCGTGGAATATGGTCTGGAGTGACTTACATAAGAGAAAACCGATATAGCTATATTCGCCAGATTGATAATGATGACAACCGATGGAGCAGAGTACAGACTGCTGGCTAATCATTTGATTTCCTTGACTACATACATACACTTTGCACCAAAGGGATCATCAGTAAACCTTTCCTCACTGTTAAGACAGCATGCTACCAGTTCAGCACCAACTGCCAACAGCTGTTGCTATACAGCAGAGTTGAACAAGAACAAAAGGAATCCCATGTATTCGTCGAATAAGTGGAATTTTCTTCCTCTGCACAAATGCAGGAGGGATGGTTGAGCTGAACAAGATTAATACGCGTGTAAAACAATCCAGCACACTGATGAATGAGAGCTGCTGCTGTGATGCATTTTCTGCTACTCTTTTCTTGAAGAGATGTATCGGTCCTTATTAGTGTATGTATTGTTCCATGCTGTTACAACTAGCCGGTGTAGAAAAACTCATGTTTGTTGTATTGAAAGGTGGTGCACGATACCTTTTTGGTTAAAAAGTGAATATCATTTCG]
[+] EMBL AK105780 [TTCCAATCGCAGCTGCCTCCCATGGCGACCACCGCCTCCCTCCTCCCTCCTCTCCTCCCGGCCCCTTCCTCCTCCCCCCGCCACCTCCACCCCTCCCCTCGCCACCTCCGCCCCTTGCCACCGATCCGCCTCCTCCGCGCCGCCCGCCGCCGCCACCCCGACGCCGTCGTCGTCGTCCCGGACGCCCGCCCCTGGGTCGGCGACCTCTCGGGCGCCGCCGCGTCCTACCGGGACGGCAGGGAAGAGGACGACGACGACGCGGGGGAGGAGGATGACGAAAACGACGACGACGACGAGGACCGCAGCCTGGACCTCCTGGTCCGCTTCCTGCACTCGGTGTTCAGGAAGGTCTCCCGCCGCGCGCGCCGCGCCGCCAGGTGAAGTTCTCGGTCAACGGCGTGCTTGTTCTCACGTTTCTATGGGTCCTAAAGGGGCTACTTGAGGTGGTGTGCACATTTGGAAGTATGGTGTTCGTGACCATCCTTCTTGTTCGTGGAATATGGTCTGGAGTGACTTACATAAGAGAAAACCGATATAGCTATATTCGCCAGATTGATAATGATGACAACCGATGGAGCAGAGTACAGACTGCTGGCTAATCATTTGATTTCCTTGACTACATACATACACTTTGCACCAAAGGGATCATCAGTAAACCTTTCCTCACTGTTAAGACAGCATGCTACCAGTTCAGCACCAACTGCCAACAGCTGTTGCTATACAGCAGAGTTGAACAAGAACAAAAGGAATCCCATGTATTCGTCGAATAAGTGGAATTTTCTTCCTCTGCACAAATGCAGGAGGGATGGTTGAGCTGAACAAGATTAATACGCGTGTAAAACAATCCAGCACACTGATGAATGAGAGCTGCTGCTGTGATGCATTTTCTGCTACTCTTTTCTTGAAGAGATGTATCGGTCCTTATTAGTGTATGTATTGTTCCATGCTGTTACAACTAGCCGGTGTAGAAAAACTCATGTTTGTTGTATTGAAAGGTGGTGCACGATACCTTTTTGGTTAAAAAGTGAATATCATTTCG]
consensusID : consensus_2787#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence
[TGACGACAACGACGACGACGACGAGGACCGCAGCCTGGACCTCCTGGTCCGCTTCCTGCACTCGGTGTTCAGGAAGGTCTCCCGCCGCGCGCGCCGCGCCGCCAGGTCCGTGCTGCCGCCTTCCGTCCCCGCTGAGCTGGTGAAGTTCTCGGTCAACGGCGTGCTTGTTCTCACGTTTCTATGGGTCCTAAAGGGGCTACTTGAGGTGGCGTGCACATTTGGAAGTATGGTGTTCGTGACCATCCTTCTTGTTCGTGGAATATGGTCTGGAGTGACTTACATAAGAGAAAACCGATATAGCTATATTCGCCAGATTGATAATGATGACAACCGATGGAGCAGAGTACAGACTGCTGGCTAATCATTTGATTTCCTTGACTACATACATACACTTTGCACCAAAGGGATCATCAGTAAACCTTTCCTCACTGTTAAGACAGCATGCTACCAGTTCAGCACCAACTGCCAACAGCTGTTGCTATACAGCAGAGTTGAACAAGAACAAAAGGAATCCCATGTATTCGTCGAATAAGTGGAATTTTCTTCCTCTGCACAAATGCAGGAGGGATGGTTGAGCTGAACAAGATTAATACGCGTGTAAAACAATCCAGCACACTGATGAATGAGAGCTGCTGCTGTGATGCATTTTCTGCTACTCTTTTCTTGAAAGATGGGGCCGGTCCTTANTAGGGGATGNATTGGTCC]
[+] EMBL CA763896 [TGACGACAACGACGACGACGACGAGGACCGCAGCCTGGACCTCCTGGTCCGCTTCCTGCACTCGGTGTTCAGGAAGGTCTCCCGCCGCGCGCGCCGCGCCGCCAGGTCCGTGCTGCCGCCTTCCGTCCCCGCTGAGCTGGTGAAGTTCTCGGTCAACGGCGTGCTTGTTCTCACGTTTCTATGGGTCCTAAAGGGGCTACTTGAGGTGGCGTGCACATTTGGAAGTATGGTGTTCGTGACCATCCTTCTTGTTCGTGGAATATGGTCTGGAGTGACTTACATAAGAGAAAACCGATATAGCTATATTCGCCAGATTGATAATGATGACAACCGATGGAGCAGAGTACAGACTGCTGGCTAATCATTTGATTTCCTTGACTACATACATACACTTTGCACCAAAGGGATCATCAGTAAACCTTTCCTCACTGTTAAGACAGCATGCTACCAGTTCAGCACCAACTGCCAACAGCTGTTGCTATACAGCAGAGTTGAACAAGAACAAAAGGAATCCCATGTATTCGTCGAATAAGTGGAATTTTCTTCCTCTGCACAAATGCAGGAGGGATGGTTGAGCTGAACAAGATTAATACGCGTGTAAAACAATCCAGCACACTGATGAATGAGAGCTGCTGCTGTGATGCATTTTCTGCTACTCTTTTCTTGAAAGATGGGGCCGGTCCTTANTAGGGGATGNATTGGTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2787#0 TTCCAATCGCAGCTGCCTCCCATGGCGACCACCGCCTCCCTCCTCCCTCCTCTCCTCCCG 60
consensus_2787#1 ------------------------------------------------------------
consensus_2787#0 GCCCCTTCCTCCTCCCCCCGCCACCTCCACCCCTCCCCTCGCCACCTCCGCCCCTTGCCA 120
consensus_2787#1 ------------------------------------------------------------
consensus_2787#0 CCGATCCGCCTCCTCCGCGCCGCCCGCCGCCGCCACCCCGACGCCGTCGTCGTCGTCCCG 180
consensus_2787#1 ------------------------------------------------------------
consensus_2787#0 GACGCCCGCCCCTGGGTCGGCGACCTCTCGGGCGCCGCCGCGTCCTACCGGGACGGCAGG 240
consensus_2787#1 ------------------------------------------------------------
consensus_2787#0 GAAGAGGACGACGACGACGCGGGGGAGGAGGATGACGAAAACGACGACGACGACGAGGAC 300
consensus_2787#1 --------------------------------TGACGACAACGACGACGACGACGAGGAC 28
****** *********************
consensus_2787#0 CGCAGCCTGGACCTCCTGGTCCGCTTCCTGCACTCGGTGTTCAGGAAGGTCTCCCGCCGC 360
consensus_2787#1 CGCAGCCTGGACCTCCTGGTCCGCTTCCTGCACTCGGTGTTCAGGAAGGTCTCCCGCCGC 88
************************************************************
consensus_2787#0 GCGCGCCGCGCCGCCAGGT----------------------------------GAAGTTC 386
consensus_2787#1 GCGCGCCGCGCCGCCAGGTCCGTGCTGCCGCCTTCCGTCCCCGCTGAGCTGGTGAAGTTC 148
******************* *******
consensus_2787#0 TCGGTCAACGGCGTGCTTGTTCTCACGTTTCTATGGGTCCTAAAGGGGCTACTTGAGGTG 446
consensus_2787#1 TCGGTCAACGGCGTGCTTGTTCTCACGTTTCTATGGGTCCTAAAGGGGCTACTTGAGGTG 208
************************************************************
consensus_2787#0 GTGTGCACATTTGGAAGTATGGTGTTCGTGACCATCCTTCTTGTTCGTGGAATATGGTCT 506
consensus_2787#1 GCGTGCACATTTGGAAGTATGGTGTTCGTGACCATCCTTCTTGTTCGTGGAATATGGTCT 268
* **********************************************************
consensus_2787#0 GGAGTGACTTACATAAGAGAAAACCGATATAGCTATATTCGCCAGATTGATAATGATGAC 566
consensus_2787#1 GGAGTGACTTACATAAGAGAAAACCGATATAGCTATATTCGCCAGATTGATAATGATGAC 328
************************************************************
consensus_2787#0 AACCGATGGAGCAGAGTACAGACTGCTGGCTAATCATTTGATTTCCTTGACTACATACAT 626
consensus_2787#1 AACCGATGGAGCAGAGTACAGACTGCTGGCTAATCATTTGATTTCCTTGACTACATACAT 388
************************************************************
consensus_2787#0 ACACTTTGCACCAAAGGGATCATCAGTAAACCTTTCCTCACTGTTAAGACAGCATGCTAC 686
consensus_2787#1 ACACTTTGCACCAAAGGGATCATCAGTAAACCTTTCCTCACTGTTAAGACAGCATGCTAC 448
************************************************************
consensus_2787#0 CAGTTCAGCACCAACTGCCAACAGCTGTTGCTATACAGCAGAGTTGAACAAGAACAAAAG 746
consensus_2787#1 CAGTTCAGCACCAACTGCCAACAGCTGTTGCTATACAGCAGAGTTGAACAAGAACAAAAG 508
************************************************************
consensus_2787#0 GAATCCCATGTATTCGTCGAATAAGTGGAATTTTCTTCCTCTGCACAAATGCAGGAGGGA 806
consensus_2787#1 GAATCCCATGTATTCGTCGAATAAGTGGAATTTTCTTCCTCTGCACAAATGCAGGAGGGA 568
************************************************************
consensus_2787#0 TGGTTGAGCTGAACAAGATTAATACGCGTGTAAAACAATCCAGCACACTGATGAATGAGA 866
consensus_2787#1 TGGTTGAGCTGAACAAGATTAATACGCGTGTAAAACAATCCAGCACACTGATGAATGAGA 628
************************************************************
consensus_2787#0 GCTGCTGCTGTGATGCATTTTCTGCTACTCTTTTCTTGAAGAGATGTATCGGTCCTTATT 926
consensus_2787#1 GCTGCTGCTGTGATGCATTTTCTGCTACTCTTTTCTTGAAAGATGGGGCCGGTCCTTANT 688
**************************************** * ********* *
consensus_2787#0 AGTGTATGTATTGTTCCATGCTGTTACAACTAGCCGGTGTAGAAAAACTCATGTTTGTTG 986
consensus_2787#1 AGGGGATGNATTGGTCC------------------------------------------- 705
** * *** **** ***
consensus_2787#0 TATTGAAAGGTGGTGCACGATACCTTTTTGGTTAAAAAGTGAATATCATTTCG 1039
consensus_2787#1 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||