cluster # 2825

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2825 cluster # 2825 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2825#0 length = 670 sequences # 1

consensus_2825#1 length = 498 sequences # 1

consensusID : consensus_2825#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 670
fasta sequence

                              [GGGGACCGGCGGATCGGAGGCGGGCGGCGGGAAGGGTGGCGGGGACGTGATCCGGCTCGAAGGGGAGGAGGCGCCCACCGAGGAGACGCCTCTGGTGGACGAGGTGTTCGAGGCCGTCCGATCCCGCGGCGCCGGCGTCCATGTGGTCCCTACCTTCGCCGGATGGTTTTCATGTAAGGAAATCCACCCAATTGAGAAGCAAATGTTGCCTTCTTTTTTCAATGGCAAATCTGACAAGCGGACACCTGAGATATATTTAGGGATCAGAAATTTCATCATGTTGAAATTTCATGCTAATCCTCAGTTGCAGCTGGAGTCCAAAGATTTGGCTGAGCTATCGATTGGGGAGGCTGATGCTCATCAGGAAGTGTTGAAGTTCCTGGACCACTGGGGCTTGATCAATTTCCACCCTTTTCTACCAGCCGGACAAGAGGAGAGTAAGCCAGAGGAGGCCCATGGCAAGTCTCACAGTGAGGAGAAAGCTTCAGTGCTTGAACAGCTGTTTAAATTTGAATCAGTTCAATCATATATGATCCCTTTACCAAAGAAAGGGGAAGTGGAAACTCCAGCTCCTCTGCCTAGTTTGCTTCCTGATCCTGCACTAATTGAAGATGTAGTTTCAGCAGCCGAGCCCTCTGTTGAGTACCATTGCAATTCCTGCTCTGTTGAT]

[+] EMBL CB965545             [GGGGACCGGCGGATCGGAGGCGGGCGGCGGGAAGGGTGGCGGGGACGTGATCCGGCTCGAAGGGGAGGAGGCGCCCACCGAGGAGACGCCTCTGGTGGACGAGGTGTTCGAGGCCGTCCGATCCCGCGGCGCCGGCGTCCATGTGGTCCCTACCTTCGCCGGATGGTTTTCATGTAAGGAAATCCACCCAATTGAGAAGCAAATGTTGCCTTCTTTTTTCAATGGCAAATCTGACAAGCGGACACCTGAGATATATTTAGGGATCAGAAATTTCATCATGTTGAAATTTCATGCTAATCCTCAGTTGCAGCTGGAGTCCAAAGATTTGGCTGAGCTATCGATTGGGGAGGCTGATGCTCATCAGGAAGTGTTGAAGTTCCTGGACCACTGGGGCTTGATCAATTTCCACCCTTTTCTACCAGCCGGACAAGAGGAGAGTAAGCCAGAGGAGGCCCATGGCAAGTCTCACAGTGAGGAGAAAGCTTCAGTGCTTGAACAGCTGTTTAAATTTGAATCAGTTCAATCATATATGATCCCTTTACCAAAGAAAGGGGAAGTGGAAACTCCAGCTCCTCTGCCTAGTTTGCTTCCTGATCCTGCACTAATTGAAGATGTAGTTTCAGCAGCCGAGCCCTCTGTTGAGTACCATTGCAATTCCTGCTCTGTTGAT]




>consensus_2825#0
GGGGACCGGCGGATCGGAGGCGGGCGGCGGGAAGGGTGGCGGGGACGTGATCCGGCTCGA
AGGGGAGGAGGCGCCCACCGAGGAGACGCCTCTGGTGGACGAGGTGTTCGAGGCCGTCCG
ATCCCGCGGCGCCGGCGTCCATGTGGTCCCTACCTTCGCCGGATGGTTTTCATGTAAGGA
AATCCACCCAATTGAGAAGCAAATGTTGCCTTCTTTTTTCAATGGCAAATCTGACAAGCG
GACACCTGAGATATATTTAGGGATCAGAAATTTCATCATGTTGAAATTTCATGCTAATCC
TCAGTTGCAGCTGGAGTCCAAAGATTTGGCTGAGCTATCGATTGGGGAGGCTGATGCTCA
TCAGGAAGTGTTGAAGTTCCTGGACCACTGGGGCTTGATCAATTTCCACCCTTTTCTACC
AGCCGGACAAGAGGAGAGTAAGCCAGAGGAGGCCCATGGCAAGTCTCACAGTGAGGAGAA
AGCTTCAGTGCTTGAACAGCTGTTTAAATTTGAATCAGTTCAATCATATATGATCCCTTT
ACCAAAGAAAGGGGAAGTGGAAACTCCAGCTCCTCTGCCTAGTTTGCTTCCTGATCCTGC
ACTAATTGAAGATGTAGTTTCAGCAGCCGAGCCCTCTGTTGAGTACCATTGCAATTCCTG
CTCTGTTGAT

consensusID : consensus_2825#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 498
fasta sequence

                              [TACTTCCGGATTTCTTAAGGAAATCCACCAATTGAGAAGCAATGTTGCCTTCTTCAATGGCAATCTGACGCGGACCCTGAGATATTTAGGGATCAGAAATTCCATGTGAAATCATGCTAATCCTCAGTTGCGCTGGAGTCCAAAGATTTGGCTGAGCTATCGATTGGGGAGGCTGATGCTCATCAGGAAGTGTTGAAGTTCCTGGACCACTGGGGCGATATTTCCACCCTTTTCTACCAGCCGGACAAGAGGAGAGTAAGCCAGAGGAGGCCCATGGCAAGTCTCACAGTGAGGAGAAAGCTTCAGTGCTTGAACAGCTGTTTAAATTTGAATCAGTTCAATCATATATGATCCCTTTACCAAAGAAAGGGGAAGGGAACTCCAGCTCCTCGCCTATTGCTTCCTGATCCTGCACTATGAAGAGTAGTTCAGCAGCGACCCTCTGTGAGTACATGCAATTCTGCTCGTGATGCCAAGAACGTACATGCCGACCAGCGA]

[+] EMBL CB966129             [TACTTCCGGATTTCTTAAGGAAATCCACCAATTGAGAAGCAATGTTGCCTTCTTCAATGGCAATCTGACGCGGACCCTGAGATATTTAGGGATCAGAAATTCCATGTGAAATCATGCTAATCCTCAGTTGCGCTGGAGTCCAAAGATTTGGCTGAGCTATCGATTGGGGAGGCTGATGCTCATCAGGAAGTGTTGAAGTTCCTGGACCACTGGGGCGATATTTCCACCCTTTTCTACCAGCCGGACAAGAGGAGAGTAAGCCAGAGGAGGCCCATGGCAAGTCTCACAGTGAGGAGAAAGCTTCAGTGCTTGAACAGCTGTTTAAATTTGAATCAGTTCAATCATATATGATCCCTTTACCAAAGAAAGGGGAAGGGAACTCCAGCTCCTCGCCTATTGCTTCCTGATCCTGCACTATGAAGAGTAGTTCAGCAGCGACCCTCTGTGAGTACATGCAATTCTGCTCGTGATGCCAAGAACGTACATGCCGACCAGCGA]




>consensus_2825#1
TACTTCCGGATTTCTTAAGGAAATCCACCAATTGAGAAGCAATGTTGCCTTCTTCAATGG
CAATCTGACGCGGACCCTGAGATATTTAGGGATCAGAAATTCCATGTGAAATCATGCTAA
TCCTCAGTTGCGCTGGAGTCCAAAGATTTGGCTGAGCTATCGATTGGGGAGGCTGATGCT
CATCAGGAAGTGTTGAAGTTCCTGGACCACTGGGGCGATATTTCCACCCTTTTCTACCAG
CCGGACAAGAGGAGAGTAAGCCAGAGGAGGCCCATGGCAAGTCTCACAGTGAGGAGAAAG
CTTCAGTGCTTGAACAGCTGTTTAAATTTGAATCAGTTCAATCATATATGATCCCTTTAC
CAAAGAAAGGGGAAGGGAACTCCAGCTCCTCGCCTATTGCTTCCTGATCCTGCACTATGA
AGAGTAGTTCAGCAGCGACCCTCTGTGAGTACATGCAATTCTGCTCGTGATGCCAAGAAC
GTACATGCCGACCAGCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2825#0      GGGGACCGGCGGATCGGAGGCGGGCGGCGGGAAGGGTGGCGGGGACGTGATCCGGCTCGA 60
consensus_2825#1      ------------------------------------------------------------
                                                                                  

consensus_2825#0      AGGGGAGGAGGCGCCCACCGAGGAGACGCCTCTGGTGGACGAGGTGTTCGAGGCCGTCCG 120
consensus_2825#1      ------------------------------------------------------------
                                                                                  

consensus_2825#0      ATCCCGCGGCGCCGGCGTCCATGTGGTCCCTACCTTCGCCGGATGGTTTTCATGTAAGGA 180
consensus_2825#1      ------------------------------TACTTCCG------GATTTCT---TAAGGA 21
                                                    *** * **      * ***     ******

consensus_2825#0      AATCCACCCAATTGAGAAGCAAATGTTGCCTTCTTTTTTCAATGGCAAATCTGACAAGCG 240
consensus_2825#1      AATCCACC-AATTGAGAAGCAA-TGTTGCCTTCTT----CAATGGCAA-TCTGAC--GCG 72
                      ******** ************* ************    ********* ******  ***

consensus_2825#0      GACACCTGAGATATATTTAGGGATCAGAAATTTCATCATGTTGAAATTTCATGCTAATCC 300
consensus_2825#1      GAC-CCTGAGATAT--TTAGGGATCAGAAATTCCATG----TGAAAT--CATGCTAATCC 123
                      *** **********  **************** ***     ******  ***********

consensus_2825#0      TCAGTTGCAGCTGGAGTCCAAAGATTTGGCTGAGCTATCGATTGGGGAGGCTGATGCTCA 360
consensus_2825#1      TCAGTTGC-GCTGGAGTCCAAAGATTTGGCTGAGCTATCGATTGGGGAGGCTGATGCTCA 182
                      ******** ***************************************************

consensus_2825#0      TCAGGAAGTGTTGAAGTTCCTGGACCACTGGGGCTTGATCAATTTCCACCCTTTTCTACC 420
consensus_2825#1      TCAGGAAGTGTTGAAGTTCCTGGACCACTGGGGC--GAT--ATTTCCACCCTTTTCTACC 238
                      **********************************  ***  *******************

consensus_2825#0      AGCCGGACAAGAGGAGAGTAAGCCAGAGGAGGCCCATGGCAAGTCTCACAGTGAGGAGAA 480
consensus_2825#1      AGCCGGACAAGAGGAGAGTAAGCCAGAGGAGGCCCATGGCAAGTCTCACAGTGAGGAGAA 298
                      ************************************************************

consensus_2825#0      AGCTTCAGTGCTTGAACAGCTGTTTAAATTTGAATCAGTTCAATCATATATGATCCCTTT 540
consensus_2825#1      AGCTTCAGTGCTTGAACAGCTGTTTAAATTTGAATCAGTTCAATCATATATGATCCCTTT 358
                      ************************************************************

consensus_2825#0      ACCAAAGAAAGGGGAAGTGGAAACTCCAGCTCCTCTGCCTAGTTTGCTTCCTGATCCTGC 600
consensus_2825#1      ACCAAAGAAAGGGGAAG--GGAACTCCAGCTCCTC-GCCTA--TTGCTTCCTGATCCTGC 413
                      *****************  * ************** *****  *****************

consensus_2825#0      ACTAATTGAAGATGTAGTTTCAGCAGCCGAGCCCTCTGTTGAGTACCATTGCAATTCCTG 660
consensus_2825#1      ACTA--TGAAGA-GTAGTT-CAGCAGC--GACCCTCTGT-GAGTACA--TGCAATTCTGC 464
                      ****  ****** ****** *******    ******** ******   ********   

consensus_2825#0      CTCTGTTGAT------------------------ 670
consensus_2825#1      TCGTGATGCCAAGAACGTACATGCCGACCAGCGA 498
                         ** **