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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2845#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1213 fasta sequence
[ATCGCCTCGCCGCAACCGCGACCGCGCCGGCGAGCTGCACCGCCCCCGTCGAAGTTTCCCGCGGAGCTCGTCGTTCTCGAGCCTCTTCCGATGCTTTCTGCACGGCGAGCCGGCGCCGGCGGCGCCGCCGGGAAGACGTCGCATGCTCGCCCCTGCAACCCTGGTTACCCGCGGCGCTCGTCGGTCCCGATGACCGGCGGCGACGCGACTAGACCAGCCGTGGCGAGGGCGCTTCGCCTTCCGGGTAGTGGGGGAGGGGCGGGTTTCCAGCGGCGGGAGCCCCACCGATGGCTCCGTCCCTGCTCCTCCTCCCGGAGTGGAGATGGCGCCGCCGCCGTTCTCGCCTCGCGATCCGGGAGCAGCGACATGGGCCTCGGGGTTTCTTCTTTCTCGCCGTGCTCGCTTCCCCGCCGCGTCGACGCTCCTCGCCGGCGGCCAGTGTGGTGTTCGCCGGCTGCTCCTCCTCCTCCTCCTCCTCCTCGTGTGGAGGTGCAGAGCGTCCGGAAGAGGCGAATGAGCGAGGAATGGGAGGCGTTGAAGGCAGCCATCGCCGACATGTTCCGGCCCTTGCTGCGAAACCTAGCTGACATTTGCTCTCTCCGCAGCGCCTACGACTTCGAGGACTATCAAATCGGCATGCTCTTTGGTGCGTTTCTCGGATATGTCGGGTGCTACCAGCTGTGGAAGGCGGCTCCTTCCGTCTTCGTTGATGCTGCCCTTGCCTTTGTGTTTTACAAGCTCAGCGTTGTGTCCTCAGAGCTGCACCGGCAGCGCAAGACAAACAGCTTGATCACGCGGCTTAAATTCGGGACCATACTTATCATGGTTATGAAAGACATCAAGAAGAACTATGTACTCCTGGACATTATTAGAATGCCGGTTTTCTTCCTCTACATTTGTGCGTTCGTATTCGATGTTGCTGGTATGAAGAAGTATGCCAGGCGCTCACTTATTTCATTGTTTAATCTGCTGAAATCTAGAGGTGGCATACAAGAAATATATAGGATTATGTGGTATCCTGGTTATATATCTCCATATGATGATTCTGCTGACTGGTGATGCATTTGTGTGAGTGGTTCCCACTTAGGAGCTTGTTCTAGGAAGGATGGAGCTTGTTCTAGGAAGGATGCCCTCCCCTTCACAAAGTTTTGTAAAGTATAATAACGAATAAATAGCTATGAACGTATGGTGAGTCTCTACAAAAGAAACATTC]
[+] EMBL AK102989 [ATCGCCTCGCCGCAACCGCGACCGCGCCGGCGAGCTGCACCGCCCCCGTCGAAGTTTCCCGCGGAGCTCGTCGTTCTCGAGCCTCTTCCGATGCTTTCTGCACGGCGAGCCGGCGCCGGCGGCGCCGCCGGGAAGACGTCGCATGCTCGCCCCTGCAACCCTGGTTACCCGCGGCGCTCGTCGGTCCCGATGACCGGCGGCGACGCGACTAGACCAGCCGTGGCGAGGGCGCTTCGCCTTCCGGGTAGTGGGGGAGGGGCGGGTTTCCAGCGGCGGGAGCCCCACCGATGGCTCCGTCCCTGCTCCTCCTCCCGGAGTGGAGATGGCGCCGCCGCCGTTCTCGCCTCGCGATCCGGGAGCAGCGACATGGGCCTCGGGGTTTCTTCTTTCTCGCCGTGCTCGCTTCCCCGCCGCGTCGACGCTCCTCGCCGGCGGCCAGTGTGGTGTTCGCCGGCTGCTCCTCCTCCTCCTCCTCCTCCTCGTGTGGAGGTGCAGAGCGTCCGGAAGAGGCGAATGAGCGAGGAATGGGAGGCGTTGAAGGCAGCCATCGCCGACATGTTCCGGCCCTTGCTGCGAAACCTAGCTGACATTTGCTCTCTCCGCAGCGCCTACGACTTCGAGGACTATCAAATCGGCATGCTCTTTGGTGCGTTTCTCGGATATGTCGGGTGCTACCAGCTGTGGAAGGCGGCTCCTTCCGTCTTCGTTGATGCTGCCCTTGCCTTTGTGTTTTACAAGCTCAGCGTTGTGTCCTCAGAGCTGCACCGGCAGCGCAAGACAAACAGCTTGATCACGCGGCTTAAATTCGGGACCATACTTATCATGGTTATGAAAGACATCAAGAAGAACTATGTACTCCTGGACATTATTAGAATGCCGGTTTTCTTCCTCTACATTTGTGCGTTCGTATTCGATGTTGCTGGTATGAAGAAGTATGCCAGGCGCTCACTTATTTCATTGTTTAATCTGCTGAAATCTAGAGGTGGCATACAAGAAATATATAGGATTATGTGGTATCCTGGTTATATATCTCCATATGATGATTCTGCTGACTGGTGATGCATTTGTGTGAGTGGTTCCCACTTAGGAGCTTGTTCTAGGAAGGATGGAGCTTGTTCTAGGAAGGATGCCCTCCCCTTCACAAAGTTTTGTAAAGTATAATAACGAATAAATAGCTATGAACGTATGGTGAGTCTCTACAAAAGAAACATTC]
consensusID : consensus_2845#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 978 fasta sequence
[CAATTGTATAGTTTTGAGAAAATCCATGAAATGCCATCGACAAGCACTCTAATCCTAGAAATGCCATCGACAAAAGCAACTTCCCAGAAATACCATTGTACAAGCCTCTTTCTCCCAAAAATACCATCATAGTCAACTCTACACCGTTACAACCGTTATTTTTTTTGATAATGACCATTTTACCCTCAGTGCAGGATATACCAGTTTTCACGGTAAAAGAAAAAGAAAGATGAAACGGTGAAAATTTCTAACGCTAACCCTAAACCGAACCCAATCCAGGCGGCTCTCCCGGCGGCGGCGCGGCGGTCCACGGCGGCGGTGGTGCGGGGCTCGGCAACGGCGGCGAGGAGGTTGCAGGCGACGGCGAGGCGGCGGTCCACGGCGGCGGTGCGGCGGTCCACAGCGGTGGCGAGGGAGAGGCGGGTTTCCAGCGGGGTGCGGGGGCTCGGCGACGGCGGCGTGGCAGCGGTCCACAGCGGCGACGAGGAGGTTGCAGGCGGCGGCGAGGCTGTCCACAGCGGCGGTGGCGCGGGGCTCGGCGGCAGTCCACGGTGGCGGCGCGGCGGTCCACAGCGGAGGCGAGGGAGAGACGGGTTTCCAGCGGTGGGTTTCCAGCCTTCCTGGTAGTGGGGGAGAGGCGGGTTTCCAGCGGCGGAAGCCCCACCGATGGCTCCATCCCTGCTCCTCCTCCCAAAGAATAGCTACCGGACCTCGGAGTGGAGATGGCGCTGTCGCCGTTCTTGCCTCGCGACCCGGGAGCAGTGGACATTGGCCTCGGGGTTTTTTCTTTCTCGCTGTGCTCACTTCCCCACCGCATCGACGCTCCTCGCCGACGACCAGTGGTAGGTGAAGTTTCTTTTGGATTTCTCTTACGATGCAGAAATGCTGAGTTGCTGCATGTGCAGTGAGTCCGGAAGCGGCGAATGTGTGAAATTTTTTTTGAATCTGATTTCTGTGAATTTAATTCTGAAATGATTT]
[+] EMBL AK111256 [CAATTGTATAGTTTTGAGAAAATCCATGAAATGCCATCGACAAGCACTCTAATCCTAGAAATGCCATCGACAAAAGCAACTTCCCAGAAATACCATTGTACAAGCCTCTTTCTCCCAAAAATACCATCATAGTCAACTCTACACCGTTACAACCGTTATTTTTTTTGATAATGACCATTTTACCCTCAGTGCAGGATATACCAGTTTTCACGGTAAAAGAAAAAGAAAGATGAAACGGTGAAAATTTCTAACGCTAACCCTAAACCGAACCCAATCCAGGCGGCTCTCCCGGCGGCGGCGCGGCGGTCCACGGCGGCGGTGGTGCGGGGCTCGGCAACGGCGGCGAGGAGGTTGCAGGCGACGGCGAGGCGGCGGTCCACGGCGGCGGTGCGGCGGTCCACAGCGGTGGCGAGGGAGAGGCGGGTTTCCAGCGGGGTGCGGGGGCTCGGCGACGGCGGCGTGGCAGCGGTCCACAGCGGCGACGAGGAGGTTGCAGGCGGCGGCGAGGCTGTCCACAGCGGCGGTGGCGCGGGGCTCGGCGGCAGTCCACGGTGGCGGCGCGGCGGTCCACAGCGGAGGCGAGGGAGAGACGGGTTTCCAGCGGTGGGTTTCCAGCCTTCCTGGTAGTGGGGGAGAGGCGGGTTTCCAGCGGCGGAAGCCCCACCGATGGCTCCATCCCTGCTCCTCCTCCCAAAGAATAGCTACCGGACCTCGGAGTGGAGATGGCGCTGTCGCCGTTCTTGCCTCGCGACCCGGGAGCAGTGGACATTGGCCTCGGGGTTTTTTCTTTCTCGCTGTGCTCACTTCCCCACCGCATCGACGCTCCTCGCCGACGACCAGTGGTAGGTGAAGTTTCTTTTGGATTTCTCTTACGATGCAGAAATGCTGAGTTGCTGCATGTGCAGTGAGTCCGGAAGCGGCGAATGTGTGAAATTTTTTTTGAATCTGATTTCTGTGAATTTAATTCTGAAATGATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2845#0 ATCGCCTCGCCGCAACCGCGACCGCGCCGGCGAGCTGCACCGCCCCCGTCGAAGTTTCCC 60
consensus_2845#1 -------------------------------CAATTGTATAGTTTTGA--GAAAATCCAT 27
* ** * * *** * *
consensus_2845#0 GCGGAGC--TCGTC--GTTCTCGAGCCTCTTCCGATGCTTTCTGCACGGCGAGCCGGCGC 116
consensus_2845#1 GAAATGCCATCGACAAGCACTCTAATC-CTAGAAATGCCATCGACAAAAGCAACT--TCC 84
* ** *** * * *** * * ** **** ** ** * * *
consensus_2845#0 CGGCGGCGCCGCCGGGAAGACGTCGCATGCTCGCCCCTGCAACCCTGGTTACCCGCGGCG 176
consensus_2845#1 CAGAAATACCATTGTACAAGCCTCTTTCTCCCAAAAATACCATCATAGTCAACTCTACAC 144
* * ** * * * ** * * * * * * * ** * *
consensus_2845#0 CTCGTCGGTCCCGATGACCGGCGGCGACGCGACTAGACCAGCCGTGGCG-AGGGCGCTTC 235
consensus_2845#1 CGTTACAACCGTTATTTTTTTTGATAATG--ACCATTTTACCCTCAGTGCAGGATATACC 202
* * * ** * * * ** * * ** * * *** *
consensus_2845#0 GCCTTCCGGGTAGTGGGGGAGGGGCGGGTTTCCAGCGGCGGGAGCCCCACCGATGGCTCC 295
consensus_2845#1 AGTTTTCA--CGGTAAAAGAAAAAGAAAGATGAAACGGTGAAAATTTC-----TAACGCT 255
** * ** ** * * *** * * * * * *
consensus_2845#0 GTCCCTGCTCCTCCTCCCGGAGTGGAGATGGCGCCGCCGCCGTTCTCGCCTCGCGATCCG 355
consensus_2845#1 AACCCTAAACCGAACCC---AATCCAGGCGGCTCTCCCGGCGGCGGCGCGGCGGTCCACG 312
**** ** ** * * ** *** * *** ** *** ** **
consensus_2845#0 GGAGCAGCGACATGGGCCTCGGGGTTTCTTCTTTCTCGCCGTGCTCGCTTCCC-CGCCGC 414
consensus_2845#1 GCGGCGGTGGTGCGGGGCTCGG-----CAACGGCGGCGAGGAGGTTGCAGGCGACGGCGA 367
* ** * * *** ***** * * ** * * * ** * ** **
consensus_2845#0 GTCGACGCTCCTCGCCGGCGGCCAGTGTGGTGTTCGCCGGCTGCTCCTCCTCCTCCTCCT 474
consensus_2845#1 GGCGGCGGTCCACGGCGGCGG----TGCGGCGGTCCACAGCGGTGGCGAGGGAGAGGCGG 423
* ** ** *** ** ****** ** ** * ** * ** * * *
consensus_2845#0 CCTCCTCGTGTGGAGGTGCAGAGCGTCCGGAAGAGGCGAATGAGCGAGGAATGGGAGGCG 534
consensus_2845#1 GTTTCCAGCG---GGGTGCGGGG-GCTCGGCGACGGCG----------GCGTGGCAGCGG 469
* * * * ***** * * * *** **** * *** ** *
consensus_2845#0 TTGAAGGCAGCCATCGCCGACATGTTCCGGCCCTTGCTGCGAAACCTAGCTGACATTTGC 594
consensus_2845#1 TCCACAGCGGCGA---CGAGGAGGTTGCAGGC--GGCGGCGAGGCT--GTCCACAGCGGC 522
* * ** ** * * * *** * * * ** **** * * *** **
consensus_2845#0 TCTCTCCGCAGCGCCTACGACTTCGAGGACTATCAAATCGGCATGCTCTTTGGTGCGTTT 654
consensus_2845#1 GGTGGCGCGGGGCTCGGCGGCAGTCCACGGTGGCGGCGCGGC--GGTCCACAGCGGAGGC 580
* * * * ** * * * **** * ** * *
consensus_2845#0 CTCGGATATGTCGGGTGCTACCAGCTGTGGAAGGCGGCTCCTTCCGTCTTCGTTGATGCT 714
consensus_2845#1 GAGGGAGA-GACGGGT--TTCCAGCGGTGGGTTTCCAGCCTTCCTGGTAGTGGGGGAGAG 637
*** * * ***** * ***** **** * * * * * * * *
consensus_2845#0 GCCCTTGCCTTTGTGTTTTACAAGCTCAGCGTTGTGTCCTCAGAGCTGCACCGGCAGCGC 774
consensus_2845#1 GC---GGGTTTCCAGCGGCGGAAGCCCCAC-CGATGGCTCCATCCCTGCTCCTCCTCCCA 693
** * ** * **** * * ** * ** **** ** * *
consensus_2845#0 AAGACAAACAGCTTGATCACGCGGCTTAAATTCGGGACCATACTTATCATGGTTATGAAA 834
consensus_2845#1 AAGAATAGCTACCGGACCTCGGAGTGGAGAT--GGCGCTGTCGCCGTTCTTGCCTCGCGA 751
**** * * * ** * ** * * ** ** * * * * * * *
consensus_2845#0 GACATCAAGAA-GAACTATGTACTCCTGGACATTATTAGAATGCCGGTTTTCTTCCTCTA 893
consensus_2845#1 CCCGGGAGCAGTGGACATTGGCCTCGGGGTTTTTTCTTTCTCGCTGTGCTCACTTCCCCA 811
* * * * ** ** *** ** ** * ** * * * * * *
consensus_2845#0 CATTTGTGCGTTCGTATTCGATGTTGCTGGTATGAAGAAGTATGCCAGGCGCTCACTTAT 953
consensus_2845#1 C-----CGCATCGACGCTCC---TCGCCGACGACCAGTGGTAGGTGAAGTTTCTTTTGGA 863
* ** * ** * ** * ** *** * * * *
consensus_2845#0 TTCATTGTTTAATCTGCTGAAATCTAGAGGTGGCATACAAGAAATATATAGGATTATGTG 1013
consensus_2845#1 TTTCTCTTACGAT--GCAGAAATGCTGAGTTGCTGCATGTGCAGTGAGTCCGG--AAGCG 919
** * * ** ** ***** *** ** * * * * * * * * *
consensus_2845#0 GTATCCTGGTTATATATCTCCATATGATGATTCTGCTGACTGGTGATGCATTTGTGTGAG 1073
consensus_2845#1 GCGAATGTGTGAAATTTTTTT------TGAATCTGATTTCTGTGAATTTAATTCTG-AAA 972
* ** * ** * * *** **** * *** ** * ** ** *
consensus_2845#0 TGGTTCCCACTTAGGAGCTTGTTCTAGGAAGGATGGAGCTTGTTCTAGGAAGGATGCCCT 1133
consensus_2845#1 TGATTT------------------------------------------------------ 978
** **
consensus_2845#0 CCCCTTCACAAAGTTTTGTAAAGTATAATAACGAATAAATAGCTATGAACGTATGGTGAG 1193
consensus_2845#1 ------------------------------------------------------------
consensus_2845#0 TCTCTACAAAAGAAACATTC 1213
consensus_2845#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||