cluster # 2850

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Oryza sativa
cluster # 2850 cluster # 2850 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2850#0 length = 779 sequences # 1

consensus_2850#1 length = 678 sequences # 1

consensusID : consensus_2850#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 779
fasta sequence

                              [TTAGTGGTAGGAATGGATCTAGTGTTGGGACTGAGATGGATGAACTTTCTGCCATTTGCTGTTGTTGGTCTTCTGCAGATCAATTTCGTGCTCCTGATCAGCCGCCAGGGCAAGGTGAGGCTTACCAAGTGGTACTCGCCTTACACCCAGAAGGAGAGGACTAAGGTTATCCGTGAGCTCAGTGGGCTCATTCTAACACGCGGGCCAAAACTCTGCAACTTTGTTGAGTGGAAGGGTTACAAGGTTGTGTACAGAAGGTATGCGAGCCTGTATTTCTGCATGTGCATTGATGCTGAGGACAATGAGCTCGAGGTCCTTGAAATTATCCATCACTTCGTTGAAGTACTGGACCGATATTTTGGCAGCGTATGCGAGCTGGATTTGATATTCAATTTCCACAAGGCCTACTACATACTTGATGAAATTCTCATCGCTGGTGAGCTTCAAGAATCTAGCAAGAAAAATGTTGCAAGACTAATTGCTGCACAGGATTCATTGGTAGAGGCAGCTAAAGAGGAAGCTAGCTCTATAAGCAACATCATTGCCCAGGCTACAAAATAAAATTCTACTCCAGTCTGATGTTTGCTCTCTTTTGTTGTGTTATATTGGTAAATGCAATGTACTAGTCCATTTGGTCTGTTCAGTTTTCTAAGATACGTCTTTCAAGGTGCCAGGATTAAGAATGAACATGATGTAACTACACTGTATCCGCTATTTTGAACCGAAGTCCGATTTTCCTTATTGATAAAAATGTGCATGAGAAGTTGATCGTGGGAAAA]

[+] EMBL AF443602             [TTAGTGGTAGGAATGGATCTAGTGTTGGGACTGAGATGGATGAACTTTCTGCCATTTGCTGTTGTTGGTCTTCTGCAGATCAATTTCGTGCTCCTGATCAGCCGCCAGGGCAAGGTGAGGCTTACCAAGTGGTACTCGCCTTACACCCAGAAGGAGAGGACTAAGGTTATCCGTGAGCTCAGTGGGCTCATTCTAACACGCGGGCCAAAACTCTGCAACTTTGTTGAGTGGAAGGGTTACAAGGTTGTGTACAGAAGGTATGCGAGCCTGTATTTCTGCATGTGCATTGATGCTGAGGACAATGAGCTCGAGGTCCTTGAAATTATCCATCACTTCGTTGAAGTACTGGACCGATATTTTGGCAGCGTATGCGAGCTGGATTTGATATTCAATTTCCACAAGGCCTACTACATACTTGATGAAATTCTCATCGCTGGTGAGCTTCAAGAATCTAGCAAGAAAAATGTTGCAAGACTAATTGCTGCACAGGATTCATTGGTAGAGGCAGCTAAAGAGGAAGCTAGCTCTATAAGCAACATCATTGCCCAGGCTACAAAATAAAATTCTACTCCAGTCTGATGTTTGCTCTCTTTTGTTGTGTTATATTGGTAAATGCAATGTACTAGTCCATTTGGTCTGTTCAGTTTTCTAAGATACGTCTTTCAAGGTGCCAGGATTAAGAATGAACATGATGTAACTACACTGTATCCGCTATTTTGAACCGAAGTCCGATTTTCCTTATTGATAAAAATGTGCATGAGAAGTTGATCGTGGGAAAA]




>consensus_2850#0
TTAGTGGTAGGAATGGATCTAGTGTTGGGACTGAGATGGATGAACTTTCTGCCATTTGCT
GTTGTTGGTCTTCTGCAGATCAATTTCGTGCTCCTGATCAGCCGCCAGGGCAAGGTGAGG
CTTACCAAGTGGTACTCGCCTTACACCCAGAAGGAGAGGACTAAGGTTATCCGTGAGCTC
AGTGGGCTCATTCTAACACGCGGGCCAAAACTCTGCAACTTTGTTGAGTGGAAGGGTTAC
AAGGTTGTGTACAGAAGGTATGCGAGCCTGTATTTCTGCATGTGCATTGATGCTGAGGAC
AATGAGCTCGAGGTCCTTGAAATTATCCATCACTTCGTTGAAGTACTGGACCGATATTTT
GGCAGCGTATGCGAGCTGGATTTGATATTCAATTTCCACAAGGCCTACTACATACTTGAT
GAAATTCTCATCGCTGGTGAGCTTCAAGAATCTAGCAAGAAAAATGTTGCAAGACTAATT
GCTGCACAGGATTCATTGGTAGAGGCAGCTAAAGAGGAAGCTAGCTCTATAAGCAACATC
ATTGCCCAGGCTACAAAATAAAATTCTACTCCAGTCTGATGTTTGCTCTCTTTTGTTGTG
TTATATTGGTAAATGCAATGTACTAGTCCATTTGGTCTGTTCAGTTTTCTAAGATACGTC
TTTCAAGGTGCCAGGATTAAGAATGAACATGATGTAACTACACTGTATCCGCTATTTTGA
ACCGAAGTCCGATTTTCCTTATTGATAAAAATGTGCATGAGAAGTTGATCGTGGGAAAA

consensusID : consensus_2850#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 678
fasta sequence

                              [CCACGCACGTGCTCGTGTCTCGCTGTCCCGTCCGCCGCCTCTTCTCCACTCCCCCACGCTTCCGCTCCAGATCTGCCTCTCCGCCCGCCCGGATCTAGCCACCGGTTCGCCGGCGCCGCCGCTCGGGAGCTGAACCGTGTGGCCGAGTGGCGACCTCTCCTACCGCGTAGCCATGATCAATTTCGTGCTCCTGATCAGCCGCCAGGGCAAGGTGAGGCTTACCAAGTGGTACTCGCCTTACACCCAGAAGGAGAGGACTAAGGTTATCCGTGAGCTCAGTGGGCTCATTCTAACACGCGGGCCGAAACTCTGCAACTTTGTTGAGTGGAAGGGTTACAAGGTTGTGTACAGAAGGTATGCGAGCCTGTATTTCTGCATGTGCATTGATGCTGAGGACAATGAGCTCGAGGTCCTTGAAATTATCCATCACTTCGTTGAAGTACTGGACCGATATTTTGGCAGCGTATGCGAGCTGGATTTGATATTCAATTTCCACAAGGCCTACTACATACTTGATGAAATTCTCATCGCTGGTGAGCTTCAAGAATCTAGCAAGAAAAATGTTGGAAGACTAATTGGTGGACAGGATTCATTGGTAGAGGGAGTAAAGAGAAGCTAGCTCTATAGCAACATATTGGCCAGGTACAAAATTAAATTTTAATCCAGAGTGAGGTTGGC]

[-] EMBL BI795756             [CCACGCACGTGCTCGTGTCTCGCTGTCCCGTCCGCCGCCTCTTCTCCACTCCCCCACGCTTCCGCTCCAGATCTGCCTCTCCGCCCGCCCGGATCTAGCCACCGGTTCGCCGGCGCCGCCGCTCGGGAGCTGAACCGTGTGGCCGAGTGGCGACCTCTCCTACCGCGTAGCCATGATCAATTTCGTGCTCCTGATCAGCCGCCAGGGCAAGGTGAGGCTTACCAAGTGGTACTCGCCTTACACCCAGAAGGAGAGGACTAAGGTTATCCGTGAGCTCAGTGGGCTCATTCTAACACGCGGGCCGAAACTCTGCAACTTTGTTGAGTGGAAGGGTTACAAGGTTGTGTACAGAAGGTATGCGAGCCTGTATTTCTGCATGTGCATTGATGCTGAGGACAATGAGCTCGAGGTCCTTGAAATTATCCATCACTTCGTTGAAGTACTGGACCGATATTTTGGCAGCGTATGCGAGCTGGATTTGATATTCAATTTCCACAAGGCCTACTACATACTTGATGAAATTCTCATCGCTGGTGAGCTTCAAGAATCTAGCAAGAAAAATGTTGGAAGACTAATTGGTGGACAGGATTCATTGGTAGAGGGAGTAAAGAGAAGCTAGCTCTATAGCAACATATTGGCCAGGTACAAAATTAAATTTTAATCCAGAGTGAGGTTGGC]




>consensus_2850#1
CCACGCACGTGCTCGTGTCTCGCTGTCCCGTCCGCCGCCTCTTCTCCACTCCCCCACGCT
TCCGCTCCAGATCTGCCTCTCCGCCCGCCCGGATCTAGCCACCGGTTCGCCGGCGCCGCC
GCTCGGGAGCTGAACCGTGTGGCCGAGTGGCGACCTCTCCTACCGCGTAGCCATGATCAA
TTTCGTGCTCCTGATCAGCCGCCAGGGCAAGGTGAGGCTTACCAAGTGGTACTCGCCTTA
CACCCAGAAGGAGAGGACTAAGGTTATCCGTGAGCTCAGTGGGCTCATTCTAACACGCGG
GCCGAAACTCTGCAACTTTGTTGAGTGGAAGGGTTACAAGGTTGTGTACAGAAGGTATGC
GAGCCTGTATTTCTGCATGTGCATTGATGCTGAGGACAATGAGCTCGAGGTCCTTGAAAT
TATCCATCACTTCGTTGAAGTACTGGACCGATATTTTGGCAGCGTATGCGAGCTGGATTT
GATATTCAATTTCCACAAGGCCTACTACATACTTGATGAAATTCTCATCGCTGGTGAGCT
TCAAGAATCTAGCAAGAAAAATGTTGGAAGACTAATTGGTGGACAGGATTCATTGGTAGA
GGGAGTAAAGAGAAGCTAGCTCTATAGCAACATATTGGCCAGGTACAAAATTAAATTTTA
ATCCAGAGTGAGGTTGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2850#0      ------------------------------------------------------------
consensus_2850#1      CCACGCACGTGCTCGTGTCTCGCTGTCCCGTCCGCCGCCTCTTCTCCACTCCCCCACGCT 60
                                                                                  

consensus_2850#0      ----------------------------------TTAGTGGTAGG---AATGGATCTAGT 23
consensus_2850#1      TCCGCTCCAGATCTGCCTCTCCGCCCGCCCGGATCTAGCCACCGGTTCGCCGGCGCCGCC 120
                                                         ***     **      **  *    

consensus_2850#0      GTT--GGGACTGAGATGGATGAACTTTCTGCCATTTGCTGTTGTTGGTCTTCTGCAGATC 81
consensus_2850#1      GCTCGGGAGCTGAACCGTGTGGCCGAGTGGCGACCT-CTCCTACCGCGTAGCCAT-GATC 178
                      * *  **  ****   *  **  *     ** *  * **  *   *     *    ****

consensus_2850#0      AATTTCGTGCTCCTGATCAGCCGCCAGGGCAAGGTGAGGCTTACCAAGTGGTACTCGCCT 141
consensus_2850#1      AATTTCGTGCTCCTGATCAGCCGCCAGGGCAAGGTGAGGCTTACCAAGTGGTACTCGCCT 238
                      ************************************************************

consensus_2850#0      TACACCCAGAAGGAGAGGACTAAGGTTATCCGTGAGCTCAGTGGGCTCATTCTAACACGC 201
consensus_2850#1      TACACCCAGAAGGAGAGGACTAAGGTTATCCGTGAGCTCAGTGGGCTCATTCTAACACGC 298
                      ************************************************************

consensus_2850#0      GGGCCAAAACTCTGCAACTTTGTTGAGTGGAAGGGTTACAAGGTTGTGTACAGAAGGTAT 261
consensus_2850#1      GGGCCGAAACTCTGCAACTTTGTTGAGTGGAAGGGTTACAAGGTTGTGTACAGAAGGTAT 358
                      ***** ******************************************************

consensus_2850#0      GCGAGCCTGTATTTCTGCATGTGCATTGATGCTGAGGACAATGAGCTCGAGGTCCTTGAA 321
consensus_2850#1      GCGAGCCTGTATTTCTGCATGTGCATTGATGCTGAGGACAATGAGCTCGAGGTCCTTGAA 418
                      ************************************************************

consensus_2850#0      ATTATCCATCACTTCGTTGAAGTACTGGACCGATATTTTGGCAGCGTATGCGAGCTGGAT 381
consensus_2850#1      ATTATCCATCACTTCGTTGAAGTACTGGACCGATATTTTGGCAGCGTATGCGAGCTGGAT 478
                      ************************************************************

consensus_2850#0      TTGATATTCAATTTCCACAAGGCCTACTACATACTTGATGAAATTCTCATCGCTGGTGAG 441
consensus_2850#1      TTGATATTCAATTTCCACAAGGCCTACTACATACTTGATGAAATTCTCATCGCTGGTGAG 538
                      ************************************************************

consensus_2850#0      CTTCAAGAATCTAGCAAGAAAAATGTTGCAAGACTAATTGCTGCACAGGATTCATTGGTA 501
consensus_2850#1      CTTCAAGAATCTAGCAAGAAAAATGTTGGAAGACTAATTGGTGGACAGGATTCATTGGTA 598
                      **************************** *********** ** ****************

consensus_2850#0      GAGGCAGCTAAAGAGGAAGCTAGCTCTATAAGCAACATCATTGCCCAGGCTACAAAATAA 561
consensus_2850#1      GAGGGAG-TAAAGAG-AAGCTAGCTCTATA-GCAACAT-ATTGGCCAGG-TACAAAATTA 653
                      **** ** ******* ************** ******* **** ***** ******** *

consensus_2850#0      AATTCTACTCCAGTCTGATGTTTGCTCTCTTTTGTTGTGTTATATTGGTAAATGCAATGT 621
consensus_2850#1      AATTTTAATCCAGAGTGAGGTTGGC----------------------------------- 678
                      **** ** *****  *** *** **                                   

consensus_2850#0      ACTAGTCCATTTGGTCTGTTCAGTTTTCTAAGATACGTCTTTCAAGGTGCCAGGATTAAG 681
consensus_2850#1      ------------------------------------------------------------
                                                                                  

consensus_2850#0      AATGAACATGATGTAACTACACTGTATCCGCTATTTTGAACCGAAGTCCGATTTTCCTTA 741
consensus_2850#1      ------------------------------------------------------------
                                                                                  

consensus_2850#0      TTGATAAAAATGTGCATGAGAAGTTGATCGTGGGAAAA 779
consensus_2850#1      --------------------------------------