cluster # 2888

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Oryza sativa
cluster # 2888 cluster # 2888 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2888#0 length = 1802 sequences # 1

consensus_2888#1 length = 271 sequences # 1

consensusID : consensus_2888#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1802
fasta sequence

                              [TGCCGCCGAGAACGGACAACGCGAGCACGCAAGCAGCGCCCGCGCCTCCCCCGCCATTGCCGCGAGCCGGCAACGGCAGCGGCTGGCTGCCACGGCGGTACACGGAGCGCGCCGCGCCGACGGTGATCAGGGCCTCGGCGGGGGCAGTCCACCCGGAGGAGTCGCCGGCGCGCGCCTCGCCGGAGGAGAAGGCCGCCGACGCGGCCGCTCGGCCGAAGCTGAAGCCGCTGCACTGGGACAAGGTGCGGCCGGCGAGCTCCGGCCGGCCGACGGTGTGGGACCAGCTGAAGGCGAGCTCATTCCGAGTGAACGAAGAGATGATCGAGACGCTCTTCGTCTCCAACTCGACGAGGAGAGCATCCAAGAATGGAGTCAAGGAGGCAAATGCAGCTTGCTGCAACCAGGAGAACAAGGTGCTGGACCCGAAGAAATCGCAGAACATCGCGATCATGCTGAGGGCGCTCGACGCGACGAAGGAGGAAGTCTGCAAGGCTCTCCTGGATGGCCAGGCAGAGAGCCTTGGAACTGAGCTGCTGGAGACACTTCTAAAGATGGCTCCTAGCAGAGAAGAGGAAATCAAGCTGAAGGAATTCAGGGAGGATGCCGTATCTAAGCTCGGCCCTGCCGAAAGCTTCCTCAAGGCGGTGCTTGCGATACCATTTGCGTTCAAGAGGGTCGAAGCAATGCTCTACATCGCCAACTTCGATTCGGAGGTTGACTACCTCAAGACCTCCTTCAAAACTCTTGAGGCAGCATGTGAAGAGCTGAGGGGCAGCAGGTTGTTCCACAAGATCTTAGATGCAGTGCTGAAGACCGGTAACCGCATGAACACTGGCACCAACCGCGGAAATGCAAGCGCCTTCAAGCTTGATGCCCTCCTCAAGTTAGTCGACGTAAAGGGTGCAGATGGCAAGACAACCCTTCTGCATTTTGTTATCGAAGAGATTGTCAAGTCCGAAGGTGCCAGCATCTTGGCCACTGGCCAAACATCCAACCAGGGGAGTGCCATTGCAGATGATTTCCAGTGCAAGAAGGTTGGCCTCAGAATTGTTGCTAGCCTTGGTGGTGAGCTCGGCAATGTCAAGAAGGCAGCTGGAATGGACTCAGACACACTGGCCAGCTGCGTTGCCAAGCTTTCTGCTGGTGTTAGCAAGATCAGTGAGGCCCTGCAGCTGAACCAGCAGCTCGGTTCCGATGATCATTGCAAGAGATTCCGCGCCTCAATCGGTGAGTTCCTGCAGAAGGCCGAAGCTGAGATCACCGCAGTGCAGGCTCAGGAGAGCCTCGCCCTCTCCCTCGTCAGGGAGACGACCGAGTTCTTCCACGGTGACTCGGTGAAGGAGGAAGGGCACCCTCTGAGAATCTTCATGGTGGTGCGCGACTTCCTCACCGTTCTTGATCATGTCTGCAAGGATGTCGGCAGGATGAACGAAAGAACAGCGATTGGATCTTCGCTCCGGCTGGAGAATGCACCTGTTCTTGCGAGGTTCAACGCAGTCCAACCCAGTAGCTCCGAGGAGGAGAGCTCATCGTCCTAGCCGTTGGAGCCTGCATGTTATTGTCTGAAGAAAAGCAATGCAGGCTAGGACTTTAGAATCACATAAGTATTTTGTAACTGTAGCAGATAAGTGTAGATCAAAGTCTATATGTACTAGTACATGATTCAGCATGCTAAGCATCATCCCAGCCAATGGCCTACCAAAGGTGAAAGTGGCATTGTACATGATTCAGCATGCTAAGAATCACTAGACAGGAGCTTTTGTGATCATGCTGAATGCTTGAATCTCGTGATAAAAGTAAAG]

[+] EMBL AK101828             [TGCCGCCGAGAACGGACAACGCGAGCACGCAAGCAGCGCCCGCGCCTCCCCCGCCATTGCCGCGAGCCGGCAACGGCAGCGGCTGGCTGCCACGGCGGTACACGGAGCGCGCCGCGCCGACGGTGATCAGGGCCTCGGCGGGGGCAGTCCACCCGGAGGAGTCGCCGGCGCGCGCCTCGCCGGAGGAGAAGGCCGCCGACGCGGCCGCTCGGCCGAAGCTGAAGCCGCTGCACTGGGACAAGGTGCGGCCGGCGAGCTCCGGCCGGCCGACGGTGTGGGACCAGCTGAAGGCGAGCTCATTCCGAGTGAACGAAGAGATGATCGAGACGCTCTTCGTCTCCAACTCGACGAGGAGAGCATCCAAGAATGGAGTCAAGGAGGCAAATGCAGCTTGCTGCAACCAGGAGAACAAGGTGCTGGACCCGAAGAAATCGCAGAACATCGCGATCATGCTGAGGGCGCTCGACGCGACGAAGGAGGAAGTCTGCAAGGCTCTCCTGGATGGCCAGGCAGAGAGCCTTGGAACTGAGCTGCTGGAGACACTTCTAAAGATGGCTCCTAGCAGAGAAGAGGAAATCAAGCTGAAGGAATTCAGGGAGGATGCCGTATCTAAGCTCGGCCCTGCCGAAAGCTTCCTCAAGGCGGTGCTTGCGATACCATTTGCGTTCAAGAGGGTCGAAGCAATGCTCTACATCGCCAACTTCGATTCGGAGGTTGACTACCTCAAGACCTCCTTCAAAACTCTTGAGGCAGCATGTGAAGAGCTGAGGGGCAGCAGGTTGTTCCACAAGATCTTAGATGCAGTGCTGAAGACCGGTAACCGCATGAACACTGGCACCAACCGCGGAAATGCAAGCGCCTTCAAGCTTGATGCCCTCCTCAAGTTAGTCGACGTAAAGGGTGCAGATGGCAAGACAACCCTTCTGCATTTTGTTATCGAAGAGATTGTCAAGTCCGAAGGTGCCAGCATCTTGGCCACTGGCCAAACATCCAACCAGGGGAGTGCCATTGCAGATGATTTCCAGTGCAAGAAGGTTGGCCTCAGAATTGTTGCTAGCCTTGGTGGTGAGCTCGGCAATGTCAAGAAGGCAGCTGGAATGGACTCAGACACACTGGCCAGCTGCGTTGCCAAGCTTTCTGCTGGTGTTAGCAAGATCAGTGAGGCCCTGCAGCTGAACCAGCAGCTCGGTTCCGATGATCATTGCAAGAGATTCCGCGCCTCAATCGGTGAGTTCCTGCAGAAGGCCGAAGCTGAGATCACCGCAGTGCAGGCTCAGGAGAGCCTCGCCCTCTCCCTCGTCAGGGAGACGACCGAGTTCTTCCACGGTGACTCGGTGAAGGAGGAAGGGCACCCTCTGAGAATCTTCATGGTGGTGCGCGACTTCCTCACCGTTCTTGATCATGTCTGCAAGGATGTCGGCAGGATGAACGAAAGAACAGCGATTGGATCTTCGCTCCGGCTGGAGAATGCACCTGTTCTTGCGAGGTTCAACGCAGTCCAACCCAGTAGCTCCGAGGAGGAGAGCTCATCGTCCTAGCCGTTGGAGCCTGCATGTTATTGTCTGAAGAAAAGCAATGCAGGCTAGGACTTTAGAATCACATAAGTATTTTGTAACTGTAGCAGATAAGTGTAGATCAAAGTCTATATGTACTAGTACATGATTCAGCATGCTAAGCATCATCCCAGCCAATGGCCTACCAAAGGTGAAAGTGGCATTGTACATGATTCAGCATGCTAAGAATCACTAGACAGGAGCTTTTGTGATCATGCTGAATGCTTGAATCTCGTGATAAAAGTAAAG]




>consensus_2888#0
TGCCGCCGAGAACGGACAACGCGAGCACGCAAGCAGCGCCCGCGCCTCCCCCGCCATTGC
CGCGAGCCGGCAACGGCAGCGGCTGGCTGCCACGGCGGTACACGGAGCGCGCCGCGCCGA
CGGTGATCAGGGCCTCGGCGGGGGCAGTCCACCCGGAGGAGTCGCCGGCGCGCGCCTCGC
CGGAGGAGAAGGCCGCCGACGCGGCCGCTCGGCCGAAGCTGAAGCCGCTGCACTGGGACA
AGGTGCGGCCGGCGAGCTCCGGCCGGCCGACGGTGTGGGACCAGCTGAAGGCGAGCTCAT
TCCGAGTGAACGAAGAGATGATCGAGACGCTCTTCGTCTCCAACTCGACGAGGAGAGCAT
CCAAGAATGGAGTCAAGGAGGCAAATGCAGCTTGCTGCAACCAGGAGAACAAGGTGCTGG
ACCCGAAGAAATCGCAGAACATCGCGATCATGCTGAGGGCGCTCGACGCGACGAAGGAGG
AAGTCTGCAAGGCTCTCCTGGATGGCCAGGCAGAGAGCCTTGGAACTGAGCTGCTGGAGA
CACTTCTAAAGATGGCTCCTAGCAGAGAAGAGGAAATCAAGCTGAAGGAATTCAGGGAGG
ATGCCGTATCTAAGCTCGGCCCTGCCGAAAGCTTCCTCAAGGCGGTGCTTGCGATACCAT
TTGCGTTCAAGAGGGTCGAAGCAATGCTCTACATCGCCAACTTCGATTCGGAGGTTGACT
ACCTCAAGACCTCCTTCAAAACTCTTGAGGCAGCATGTGAAGAGCTGAGGGGCAGCAGGT
TGTTCCACAAGATCTTAGATGCAGTGCTGAAGACCGGTAACCGCATGAACACTGGCACCA
ACCGCGGAAATGCAAGCGCCTTCAAGCTTGATGCCCTCCTCAAGTTAGTCGACGTAAAGG
GTGCAGATGGCAAGACAACCCTTCTGCATTTTGTTATCGAAGAGATTGTCAAGTCCGAAG
GTGCCAGCATCTTGGCCACTGGCCAAACATCCAACCAGGGGAGTGCCATTGCAGATGATT
TCCAGTGCAAGAAGGTTGGCCTCAGAATTGTTGCTAGCCTTGGTGGTGAGCTCGGCAATG
TCAAGAAGGCAGCTGGAATGGACTCAGACACACTGGCCAGCTGCGTTGCCAAGCTTTCTG
CTGGTGTTAGCAAGATCAGTGAGGCCCTGCAGCTGAACCAGCAGCTCGGTTCCGATGATC
ATTGCAAGAGATTCCGCGCCTCAATCGGTGAGTTCCTGCAGAAGGCCGAAGCTGAGATCA
CCGCAGTGCAGGCTCAGGAGAGCCTCGCCCTCTCCCTCGTCAGGGAGACGACCGAGTTCT
TCCACGGTGACTCGGTGAAGGAGGAAGGGCACCCTCTGAGAATCTTCATGGTGGTGCGCG
ACTTCCTCACCGTTCTTGATCATGTCTGCAAGGATGTCGGCAGGATGAACGAAAGAACAG
CGATTGGATCTTCGCTCCGGCTGGAGAATGCACCTGTTCTTGCGAGGTTCAACGCAGTCC
AACCCAGTAGCTCCGAGGAGGAGAGCTCATCGTCCTAGCCGTTGGAGCCTGCATGTTATT
GTCTGAAGAAAAGCAATGCAGGCTAGGACTTTAGAATCACATAAGTATTTTGTAACTGTA
GCAGATAAGTGTAGATCAAAGTCTATATGTACTAGTACATGATTCAGCATGCTAAGCATC
ATCCCAGCCAATGGCCTACCAAAGGTGAAAGTGGCATTGTACATGATTCAGCATGCTAAG
AATCACTAGACAGGAGCTTTTGTGATCATGCTGAATGCTTGAATCTCGTGATAAAAGTAA
AG

consensusID : consensus_2888#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [TGTTCTTNCGAGGTTCAACGCAGTCCAAACCCAGTANCTCCGAGGAGGAGAGCTCATCGTCCTANNCGTTGGAGCCTCCNTGTTATTGTCTGAAGAAAAGCAATGCAGGCTAGGACTTTAGAATCACATAAGTATTTTGTAACTGTANCAGATAAGTGTAGATCAAAGTCTATATGTACTAGTACATGATTCAGCATGCTAANCATCATCCCAGCCAATGGCCTACCAAAGGTGAAAGTGGCNTTGTAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU161354             [TGTTCTTNCGAGGTTCAACGCAGTCCAAACCCAGTANCTCCGAGGAGGAGAGCTCATCGTCCTANNCGTTGGAGCCTCCNTGTTATTGTCTGAAGAAAAGCAATGCAGGCTAGGACTTTAGAATCACATAAGTATTTTGTAACTGTANCAGATAAGTGTAGATCAAAGTCTATATGTACTAGTACATGATTCAGCATGCTAANCATCATCCCAGCCAATGGCCTACCAAAGGTGAAAGTGGCNTTGTAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_2888#1
TGTTCTTNCGAGGTTCAACGCAGTCCAAACCCAGTANCTCCGAGGAGGAGAGCTCATCGT
CCTANNCGTTGGAGCCTCCNTGTTATTGTCTGAAGAAAAGCAATGCAGGCTAGGACTTTA
GAATCACATAAGTATTTTGTAACTGTANCAGATAAGTGTAGATCAAAGTCTATATGTACT
AGTACATGATTCAGCATGCTAANCATCATCCCAGCCAATGGCCTACCAAAGGTGAAAGTG
GCNTTGTAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2888#0      TGCCGCCGAGAACGGACAACGCGAGCACGCAAGCAGCGCCCGCGCCTCCCCCGCCATTGC 60
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      CGCGAGCCGGCAACGGCAGCGGCTGGCTGCCACGGCGGTACACGGAGCGCGCCGCGCCGA 120
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      CGGTGATCAGGGCCTCGGCGGGGGCAGTCCACCCGGAGGAGTCGCCGGCGCGCGCCTCGC 180
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      CGGAGGAGAAGGCCGCCGACGCGGCCGCTCGGCCGAAGCTGAAGCCGCTGCACTGGGACA 240
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      AGGTGCGGCCGGCGAGCTCCGGCCGGCCGACGGTGTGGGACCAGCTGAAGGCGAGCTCAT 300
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      TCCGAGTGAACGAAGAGATGATCGAGACGCTCTTCGTCTCCAACTCGACGAGGAGAGCAT 360
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      CCAAGAATGGAGTCAAGGAGGCAAATGCAGCTTGCTGCAACCAGGAGAACAAGGTGCTGG 420
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      ACCCGAAGAAATCGCAGAACATCGCGATCATGCTGAGGGCGCTCGACGCGACGAAGGAGG 480
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      AAGTCTGCAAGGCTCTCCTGGATGGCCAGGCAGAGAGCCTTGGAACTGAGCTGCTGGAGA 540
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      CACTTCTAAAGATGGCTCCTAGCAGAGAAGAGGAAATCAAGCTGAAGGAATTCAGGGAGG 600
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      ATGCCGTATCTAAGCTCGGCCCTGCCGAAAGCTTCCTCAAGGCGGTGCTTGCGATACCAT 660
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      TTGCGTTCAAGAGGGTCGAAGCAATGCTCTACATCGCCAACTTCGATTCGGAGGTTGACT 720
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      ACCTCAAGACCTCCTTCAAAACTCTTGAGGCAGCATGTGAAGAGCTGAGGGGCAGCAGGT 780
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      TGTTCCACAAGATCTTAGATGCAGTGCTGAAGACCGGTAACCGCATGAACACTGGCACCA 840
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      ACCGCGGAAATGCAAGCGCCTTCAAGCTTGATGCCCTCCTCAAGTTAGTCGACGTAAAGG 900
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      GTGCAGATGGCAAGACAACCCTTCTGCATTTTGTTATCGAAGAGATTGTCAAGTCCGAAG 960
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      GTGCCAGCATCTTGGCCACTGGCCAAACATCCAACCAGGGGAGTGCCATTGCAGATGATT 1020
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      TCCAGTGCAAGAAGGTTGGCCTCAGAATTGTTGCTAGCCTTGGTGGTGAGCTCGGCAATG 1080
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      TCAAGAAGGCAGCTGGAATGGACTCAGACACACTGGCCAGCTGCGTTGCCAAGCTTTCTG 1140
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      CTGGTGTTAGCAAGATCAGTGAGGCCCTGCAGCTGAACCAGCAGCTCGGTTCCGATGATC 1200
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      ATTGCAAGAGATTCCGCGCCTCAATCGGTGAGTTCCTGCAGAAGGCCGAAGCTGAGATCA 1260
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      CCGCAGTGCAGGCTCAGGAGAGCCTCGCCCTCTCCCTCGTCAGGGAGACGACCGAGTTCT 1320
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      TCCACGGTGACTCGGTGAAGGAGGAAGGGCACCCTCTGAGAATCTTCATGGTGGTGCGCG 1380
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      ACTTCCTCACCGTTCTTGATCATGTCTGCAAGGATGTCGGCAGGATGAACGAAAGAACAG 1440
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      CGATTGGATCTTCGCTCCGGCTGGAGAATGCACCTGTTCTTGCGAGGTTCAACGCAGTCC 1500
consensus_2888#1      ----------------------------------TGTTCTTNCGAGGTTCAACGCAGTCC 26
                                                        ******* ******************

consensus_2888#0      AA-CCCAGTAGCTCCGAGGAGGAGAGCTCATCGTCCTAGCCGTTGGAGCCTGCATGTTAT 1559
consensus_2888#1      AAACCCAGTANCTCCGAGGAGGAGAGCTCATCGTCCTANNCGTTGGAGCCTCCNTGTTAT 86
                      ** ******* ***************************  *********** * ******

consensus_2888#0      TGTCTGAAGAAAAGCAATGCAGGCTAGGACTTTAGAATCACATAAGTATTTTGTAACTGT 1619
consensus_2888#1      TGTCTGAAGAAAAGCAATGCAGGCTAGGACTTTAGAATCACATAAGTATTTTGTAACTGT 146
                      ************************************************************

consensus_2888#0      AGCAGATAAGTGTAGATCAAAGTCTATATGTACTAGTACATGATTCAGCATGCTAAGCAT 1679
consensus_2888#1      ANCAGATAAGTGTAGATCAAAGTCTATATGTACTAGTACATGATTCAGCATGCTAANCAT 206
                      * ****************************************************** ***

consensus_2888#0      CATCCCAGCCAATGGCCTACCAAAGGTGAAAGTGGCATTGTACATGATTCAGCATGCTAA 1739
consensus_2888#1      CATCCCAGCCAATGGCCTACCAAAGGTGAAAGTGGCNTTGTAAAAAAAAAAAAAAAAAAA 266
                      ************************************ ***** *  *   *  *    **

consensus_2888#0      GAATCACTAGACAGGAGCTTTTGTGATCATGCTGAATGCTTGAATCTCGTGATAAAAGTA 1799
consensus_2888#1      AAAAA------------------------------------------------------- 271
                       **                                                         

consensus_2888#0      AAG 1802
consensus_2888#1      ---