cluster # 3001

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Oryza sativa
cluster # 3001 cluster # 3001 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3001#0 length = 684 sequences # 1

consensus_3001#1 length = 349 sequences # 1

consensusID : consensus_3001#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence

                              [GGNCAAACGGATCCGGCCACCCCGGCCNTTGGGGGTACGGCNACGGCGCGGATCCACGGCCCTTGACNTTAGAAGTGCCGCCGCCGGCCAGTGCCGCCGGCAGCGGGCAGATCCGCTACCAACGCCCTCACGGNCGACGAAGACGCGCAGATCCACCGCCCCCGACCTCGGGAACAGCAATGCCGGTGGNAGTACCAGCGACGGCGGCCGCCGAATTCGGTGGCGCCGCCCTCAGGAGCGGCTGCAGCTNAGCGATGGTGTGGCGTGACTACGGCGATTGTGACGTCGGCGGCTGCGGCAAGCTCGTGGATCCCGCCGCCTCTCCTCCCTCTCCCTCATCTTCTTCGATCCCGACGGCCAGAGGTCGCTGGGTGCGGATCCGTCAGCCGTGGATCCGGCCGGCTGGCGATGGCGATGACGGAAGCGATGGCGACGGCGGCGGGGCTAGAGTTTTTTCTTGTGGAATTTTATTTTTTTTCGCGCTTTTTCTTTTTTGCATGCAATCGGCTTAAGCGGATTTTCGCATGCGGTTGTGCTGGCCGCACGGAAAAACTCCGATTTTCACAGACCTTGTCACGCTTCCGGCTGGAGCAACCGCATGCGACAATCAGTTTCGTCCGTATGTAAAAACCAGTTTTGTAGTAGTGTTGGTTTCACTAACGTGTCGTTTTAGTCAGCAAAAAA]

[+] EMBL AU082357             [GGNCAAACGGATCCGGCCACCCCGGCCNTTGGGGGTACGGCNACGGCGCGGATCCACGGCCCTTGACNTTAGAAGTGCCGCCGCCGGCCAGTGCCGCCGGCAGCGGGCAGATCCGCTACCAACGCCCTCACGGNCGACGAAGACGCGCAGATCCACCGCCCCCGACCTCGGGAACAGCAATGCCGGTGGNAGTACCAGCGACGGCGGCCGCCGAATTCGGTGGCGCCGCCCTCAGGAGCGGCTGCAGCTNAGCGATGGTGTGGCGTGACTACGGCGATTGTGACGTCGGCGGCTGCGGCAAGCTCGTGGATCCCGCCGCCTCTCCTCCCTCTCCCTCATCTTCTTCGATCCCGACGGCCAGAGGTCGCTGGGTGCGGATCCGTCAGCCGTGGATCCGGCCGGCTGGCGATGGCGATGACGGAAGCGATGGCGACGGCGGCGGGGCTAGAGTTTTTTCTTGTGGAATTTTATTTTTTTTCGCGCTTTTTCTTTTTTGCATGCAATCGGCTTAAGCGGATTTTCGCATGCGGTTGTGCTGGCCGCACGGAAAAACTCCGATTTTCACAGACCTTGTCACGCTTCCGGCTGGAGCAACCGCATGCGACAATCAGTTTCGTCCGTATGTAAAAACCAGTTTTGTAGTAGTGTTGGTTTCACTAACGTGTCGTTTTAGTCAGCAAAAAA]




>consensus_3001#0
GGNCAAACGGATCCGGCCACCCCGGCCNTTGGGGGTACGGCNACGGCGCGGATCCACGGC
CCTTGACNTTAGAAGTGCCGCCGCCGGCCAGTGCCGCCGGCAGCGGGCAGATCCGCTACC
AACGCCCTCACGGNCGACGAAGACGCGCAGATCCACCGCCCCCGACCTCGGGAACAGCAA
TGCCGGTGGNAGTACCAGCGACGGCGGCCGCCGAATTCGGTGGCGCCGCCCTCAGGAGCG
GCTGCAGCTNAGCGATGGTGTGGCGTGACTACGGCGATTGTGACGTCGGCGGCTGCGGCA
AGCTCGTGGATCCCGCCGCCTCTCCTCCCTCTCCCTCATCTTCTTCGATCCCGACGGCCA
GAGGTCGCTGGGTGCGGATCCGTCAGCCGTGGATCCGGCCGGCTGGCGATGGCGATGACG
GAAGCGATGGCGACGGCGGCGGGGCTAGAGTTTTTTCTTGTGGAATTTTATTTTTTTTCG
CGCTTTTTCTTTTTTGCATGCAATCGGCTTAAGCGGATTTTCGCATGCGGTTGTGCTGGC
CGCACGGAAAAACTCCGATTTTCACAGACCTTGTCACGCTTCCGGCTGGAGCAACCGCAT
GCGACAATCAGTTTCGTCCGTATGTAAAAACCAGTTTTGTAGTAGTGTTGGTTTCACTAA
CGTGTCGTTTTAGTCAGCAAAAAA

consensusID : consensus_3001#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence

                              [GGGCGGCGGGCAAGCGGATCCGCCACCCCCGCCCTTGGGGGTGACGGCGACGCGCGGATCCACCGCCCTTGACCTTAGGAGTGGCGGCGGCGGGCAGTGGCGGCGGCANGGGCAGATCCGCTACCAACGCCCTCACGGGCGACNGGAGACGCGCAGATCCACCGCNCCCGACCTCGGGAACAGCAATGGCGGTGGGAGTGAGCAGCGACGGCGGGCGGCGGATTCGGTGGCGCCGCCTCAGGAGCGGCTGCAGCTGAGGCGATGGTGTGGCGTGACTACGGCGATTGTTACGTNGGCGGCTTCGGCAAGTCGTGGATCCCGTNGCTCTCCTCCCTCTCCCTCATCTTCT]

[+] EMBL C27806               [GGGCGGCGGGCAAGCGGATCCGCCACCCCCGCCCTTGGGGGTGACGGCGACGCGCGGATCCACCGCCCTTGACCTTAGGAGTGGCGGCGGCGGGCAGTGGCGGCGGCANGGGCAGATCCGCTACCAACGCCCTCACGGGCGACNGGAGACGCGCAGATCCACCGCNCCCGACCTCGGGAACAGCAATGGCGGTGGGAGTGAGCAGCGACGGCGGGCGGCGGATTCGGTGGCGCCGCCTCAGGAGCGGCTGCAGCTGAGGCGATGGTGTGGCGTGACTACGGCGATTGTTACGTNGGCGGCTTCGGCAAGTCGTGGATCCCGTNGCTCTCCTCCCTCTCCCTCATCTTCT]




>consensus_3001#1
GGGCGGCGGGCAAGCGGATCCGCCACCCCCGCCCTTGGGGGTGACGGCGACGCGCGGATC
CACCGCCCTTGACCTTAGGAGTGGCGGCGGCGGGCAGTGGCGGCGGCANGGGCAGATCCG
CTACCAACGCCCTCACGGGCGACNGGAGACGCGCAGATCCACCGCNCCCGACCTCGGGAA
CAGCAATGGCGGTGGGAGTGAGCAGCGACGGCGGGCGGCGGATTCGGTGGCGCCGCCTCA
GGAGCGGCTGCAGCTGAGGCGATGGTGTGGCGTGACTACGGCGATTGTTACGTNGGCGGC
TTCGGCAAGTCGTGGATCCCGTNGCTCTCCTCCCTCTCCCTCATCTTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3001#0      -------GGNCAAACGGATCCGGCCACCCCGGCCNTTGGGGGT-ACGGCNACGGCGCGGA 52
consensus_3001#1      GGGCGGCGGGCAAGCGGATCCG-CCACCCCCGCCCTTGGGGGTGACGGCGACG-CGCGGA 58
                             ** *** ******** ******* *** ******** ***** *** ******

consensus_3001#0      TCCACGGCCCTTGACNTTAGAAGTGCCGCCGCCGGCCAGTGCCGCCGGCAGCGGGCAGAT 112
consensus_3001#1      TCCACCGCCCTTGACCTTAGGAGTGGCGGCGGCGGGCAGTGGCGGCGGCAN-GGGCAGAT 117
                      ***** ********* **** **** ** ** *** ***** ** *****  ********

consensus_3001#0      CCGCTACCAACGCCCTCACGGNCGACGA-AGACGCGCAGATCCACCGCCCCCGACCTCGG 171
consensus_3001#1      CCGCTACCAACGCCCTCACGGGCGACNGGAGACGCGCAGATCCACCGCNCCCGACCTCGG 177
                      ********************* ****   ******************* ***********

consensus_3001#0      GAACAGCAATGCCGGTGGNAGT-ACCAGCGACGGCGGCCGCCGAATTCGGTGGCGCCGCC 230
consensus_3001#1      GAACAGCAATGGCGGTGGGAGTGAGCAGCGACGGCGGGCGGCGGATTCGGTGGCGCCGCC 237
                      *********** ****** *** * ************ ** ** ****************

consensus_3001#0      CTCAGGAGCGGCTGCAGCTNAG-CGATGGTGTGGCGTGACTACGGCGATTGTGACGTCGG 289
consensus_3001#1      -TCAGGAGCGGCTGCAGCTGAGGCGATGGTGTGGCGTGACTACGGCGATTGTTACGTNGG 296
                       ****************** ** ***************************** **** **

consensus_3001#0      CGGCTGCGGCAAGCTCGTGGATCCCGCCGCCTCTCCTCCCTCTCCCTCATCTTCTTCGAT 349
consensus_3001#1      CGGCTTCGGCAAG-TCGTGGATCCCGTNGC-TCTCCTCCCTCTCCCTCATCTTCT----- 349
                      ***** ******* ************  ** ************************     

consensus_3001#0      CCCGACGGCCAGAGGTCGCTGGGTGCGGATCCGTCAGCCGTGGATCCGGCCGGCTGGCGA 409
consensus_3001#1      ------------------------------------------------------------
                                                                                  

consensus_3001#0      TGGCGATGACGGAAGCGATGGCGACGGCGGCGGGGCTAGAGTTTTTTCTTGTGGAATTTT 469
consensus_3001#1      ------------------------------------------------------------
                                                                                  

consensus_3001#0      ATTTTTTTTCGCGCTTTTTCTTTTTTGCATGCAATCGGCTTAAGCGGATTTTCGCATGCG 529
consensus_3001#1      ------------------------------------------------------------
                                                                                  

consensus_3001#0      GTTGTGCTGGCCGCACGGAAAAACTCCGATTTTCACAGACCTTGTCACGCTTCCGGCTGG 589
consensus_3001#1      ------------------------------------------------------------
                                                                                  

consensus_3001#0      AGCAACCGCATGCGACAATCAGTTTCGTCCGTATGTAAAAACCAGTTTTGTAGTAGTGTT 649
consensus_3001#1      ------------------------------------------------------------
                                                                                  

consensus_3001#0      GGTTTCACTAACGTGTCGTTTTAGTCAGCAAAAAA 684
consensus_3001#1      -----------------------------------