cluster # 3023

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Oryza sativa
cluster # 3023 cluster # 3023 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3023#0 length = 665 sequences # 1

consensus_3023#1 length = 170 sequences # 1

consensusID : consensus_3023#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence

                              [ATACACTTCACCTTCAGTCACCATGCATTAGTAGCGCCCGCCCGCCGATATCGCTAAAGAACTTCGCGACGCGTCCAATGTATTCCGGATGCGAAACGCTGGAAAGACGCAGCGCCTCACCTTCGGCAAATGGCGTCGCCAGTTTTTTCAGGGTATGTGCACTGTTACGCACGCCCATCCGCCAGCTCATTTCCAGTTGTTTTTCCAGCGGCGGGCAAAACGCGCCGACTGGCATAAACACCGGTTGATGTTCGTCGAGCTTCGCCTGCGCCTGCCCGCCGTGCAACGTTGGCGTAATACCCATCAATTCAAAAATGGTTTCAGTCAGCACGCGGGTTGGATCTTCGCTAACCCCGTGAACCACCACAGGAAAACCGAGTTTGTGCAGGAGAATCGCCAACAACGGCGTCAGGTTGGCCTGTTTACGCGCGCCGTTGTAACTGGGGATGACAATCGGCATCGGCTTGCCTGCTGGCGGCGTCAGCTTGATGGTGTGATTTTGCATGGCTTCGTAAAAGCCGAGCATCTCTGCTTCCCCTTCTCCTTTGATACGCAGCGCAATCAATACGCCGCCCAACTCAAGGTCAGGGACTTCACCATTGAGCATATGAGCATACAGACCGCGCGCAGTATCCCGGTCTAAATCGCGCGCGTGGTTTTTCCCG]

[+] EMBL CF306070             [ATACACTTCACCTTCAGTCACCATGCATTAGTAGCGCCCGCCCGCCGATATCGCTAAAGAACTTCGCGACGCGTCCAATGTATTCCGGATGCGAAACGCTGGAAAGACGCAGCGCCTCACCTTCGGCAAATGGCGTCGCCAGTTTTTTCAGGGTATGTGCACTGTTACGCACGCCCATCCGCCAGCTCATTTCCAGTTGTTTTTCCAGCGGCGGGCAAAACGCGCCGACTGGCATAAACACCGGTTGATGTTCGTCGAGCTTCGCCTGCGCCTGCCCGCCGTGCAACGTTGGCGTAATACCCATCAATTCAAAAATGGTTTCAGTCAGCACGCGGGTTGGATCTTCGCTAACCCCGTGAACCACCACAGGAAAACCGAGTTTGTGCAGGAGAATCGCCAACAACGGCGTCAGGTTGGCCTGTTTACGCGCGCCGTTGTAACTGGGGATGACAATCGGCATCGGCTTGCCTGCTGGCGGCGTCAGCTTGATGGTGTGATTTTGCATGGCTTCGTAAAAGCCGAGCATCTCTGCTTCCCCTTCTCCTTTGATACGCAGCGCAATCAATACGCCGCCCAACTCAAGGTCAGGGACTTCACCATTGAGCATATGAGCATACAGACCGCGCGCAGTATCCCGGTCTAAATCGCGCGCGTGGTTTTTCCCG]




>consensus_3023#0
ATACACTTCACCTTCAGTCACCATGCATTAGTAGCGCCCGCCCGCCGATATCGCTAAAGA
ACTTCGCGACGCGTCCAATGTATTCCGGATGCGAAACGCTGGAAAGACGCAGCGCCTCAC
CTTCGGCAAATGGCGTCGCCAGTTTTTTCAGGGTATGTGCACTGTTACGCACGCCCATCC
GCCAGCTCATTTCCAGTTGTTTTTCCAGCGGCGGGCAAAACGCGCCGACTGGCATAAACA
CCGGTTGATGTTCGTCGAGCTTCGCCTGCGCCTGCCCGCCGTGCAACGTTGGCGTAATAC
CCATCAATTCAAAAATGGTTTCAGTCAGCACGCGGGTTGGATCTTCGCTAACCCCGTGAA
CCACCACAGGAAAACCGAGTTTGTGCAGGAGAATCGCCAACAACGGCGTCAGGTTGGCCT
GTTTACGCGCGCCGTTGTAACTGGGGATGACAATCGGCATCGGCTTGCCTGCTGGCGGCG
TCAGCTTGATGGTGTGATTTTGCATGGCTTCGTAAAAGCCGAGCATCTCTGCTTCCCCTT
CTCCTTTGATACGCAGCGCAATCAATACGCCGCCCAACTCAAGGTCAGGGACTTCACCAT
TGAGCATATGAGCATACAGACCGCGCGCAGTATCCCGGTCTAAATCGCGCGCGTGGTTTT
TCCCG

consensusID : consensus_3023#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 170
fasta sequence

                              [AGGAAAACCGAGTTTGTGCAGGAGAATCGCCAACAACGGCGTCAGGTTGGCCTGTTTANNNNNGCCGTTGTAACTGGGGATGNNNATCGGCATCGGCTTGCCTGCTGGCGGCGTCNNNTTGATGNNNTGATTTTGCATGGCTTNNNAAAAGCCGAGCATCTCTGCTTCCC]

[+] EMBL CF197207             [AGGAAAACCGAGTTTGTGCAGGAGAATCGCCAACAACGGCGTCAGGTTGGCCTGTTTANNNNNGCCGTTGTAACTGGGGATGNNNATCGGCATCGGCTTGCCTGCTGGCGGCGTCNNNTTGATGNNNTGATTTTGCATGGCTTNNNAAAAGCCGAGCATCTCTGCTTCCC]




>consensus_3023#1
AGGAAAACCGAGTTTGTGCAGGAGAATCGCCAACAACGGCGTCAGGTTGGCCTGTTTANN
NNNGCCGTTGTAACTGGGGATGNNNATCGGCATCGGCTTGCCTGCTGGCGGCGTCNNNTT
GATGNNNTGATTTTGCATGGCTTNNNAAAAGCCGAGCATCTCTGCTTCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3023#0      ATACACTTCACCTTCAGTCACCATGCATTAGTAGCGCCCGCCCGCCGATATCGCTAAAGA 60
consensus_3023#1      ------------------------------------------------------------
                                                                                  

consensus_3023#0      ACTTCGCGACGCGTCCAATGTATTCCGGATGCGAAACGCTGGAAAGACGCAGCGCCTCAC 120
consensus_3023#1      ------------------------------------------------------------
                                                                                  

consensus_3023#0      CTTCGGCAAATGGCGTCGCCAGTTTTTTCAGGGTATGTGCACTGTTACGCACGCCCATCC 180
consensus_3023#1      ------------------------------------------------------------
                                                                                  

consensus_3023#0      GCCAGCTCATTTCCAGTTGTTTTTCCAGCGGCGGGCAAAACGCGCCGACTGGCATAAACA 240
consensus_3023#1      ------------------------------------------------------------
                                                                                  

consensus_3023#0      CCGGTTGATGTTCGTCGAGCTTCGCCTGCGCCTGCCCGCCGTGCAACGTTGGCGTAATAC 300
consensus_3023#1      ------------------------------------------------------------
                                                                                  

consensus_3023#0      CCATCAATTCAAAAATGGTTTCAGTCAGCACGCGGGTTGGATCTTCGCTAACCCCGTGAA 360
consensus_3023#1      ------------------------------------------------------------
                                                                                  

consensus_3023#0      CCACCACAGGAAAACCGAGTTTGTGCAGGAGAATCGCCAACAACGGCGTCAGGTTGGCCT 420
consensus_3023#1      -------AGGAAAACCGAGTTTGTGCAGGAGAATCGCCAACAACGGCGTCAGGTTGGCCT 53
                             *****************************************************

consensus_3023#0      GTTTACGCGCGCCGTTGTAACTGGGGATGACAATCGGCATCGGCTTGCCTGCTGGCGGCG 480
consensus_3023#1      GTTTANNNNNGCCGTTGTAACTGGGGATGNNNATCGGCATCGGCTTGCCTGCTGGCGGCG 113
                      *****     *******************   ****************************

consensus_3023#0      TCAGCTTGATGGTGTGATTTTGCATGGCTTCGTAAAAGCCGAGCATCTCTGCTTCCCCTT 540
consensus_3023#1      TCNNNTTGATGNNNTGATTTTGCATGGCTTNNNAAAAGCCGAGCATCTCTGCTTCCC--- 170
                      **   ******   ****************   ************************   

consensus_3023#0      CTCCTTTGATACGCAGCGCAATCAATACGCCGCCCAACTCAAGGTCAGGGACTTCACCAT 600
consensus_3023#1      ------------------------------------------------------------
                                                                                  

consensus_3023#0      TGAGCATATGAGCATACAGACCGCGCGCAGTATCCCGGTCTAAATCGCGCGCGTGGTTTT 660
consensus_3023#1      ------------------------------------------------------------
                                                                                  

consensus_3023#0      TCCCG 665
consensus_3023#1      -----