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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_304#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1573 fasta sequence
[GGTGCAGAGGGCCAGAGGCTAGCAACGCGAGGCGGGAAAGTGGAGGGCGGCCGGCGGCGCGACGGTGGCCGGTGCCCGACGGCGGCTGCTATAGCGGGAAACACGGCGACGCGGCGGCCCCAACGGTGATGTCATCGACTGCGTGCCGACGCACCTGCAGCCATCCGGTTCGGGATGAAGCAGCCACGCGCCGCCGACATCGTCCGCCCCGACTCCACCAACGATGGCTGCAACTCCTGCTCGCGCATGCCGAGGCGGCCTCTGTGCTGGCGCTCCTCCTGCGCGCGTTCGGCTGCCCTTGGCGAGCGGCGCACACCTTGGCCTCAGCCTCTGCTTCGCGGGGGCCGCGCCGTAGGCCGTGGACGTGCCGCGGCTGGTGCTCCACTTCGACAGCGCTGGGTCATGGAGTAGCAGAGCTCGAGCACGGGGCAGTGCTACAGAGCTCGGGGATTACGTCGTAGTTGAACCCGAACCCGAGATCCACGCACCCCTTCAGCTCCTCTAGGTCGTCGTTGACTCGTCGGTCAAGCTCGGCGCGTGCCGCCGCCGCCGTCACCCCCGCTCCTCGCCGTACACGCGCCGCCGCCGAAGACGACGACGCCGCAGGGCTCCTCCTTGGCGACCACCACCGGCTTCGTCCCCCGTGGTCACGCCGCCTCCCGCTGTACACCGCACCACACGTCTTCGGCCTCGACCTCGGCCGCCGCTTCCGCTCCGCTCGTGGCCTGCTACCGTCGTCGCCCCGCTACTCCGCCCGCCCTTCCGCGTTCCAACACGGCGAGCCATGCCCGGCGGCGAGAGGACCATCGCCGCGGCCGTGCAAATCCGGCAGCTGAGCGGCGGGATCCATACGGCAGCGGCGGAGGAGGAGGAGACCGGGAGATTGGCCGCCGCACGCTGCTCCTCTCCCGCGAGCCGCCGCGCGCCGCTCCTCTTCCACAGGCCGTCGCGCGCCGCTGCCTCCTCGTCGGTGAAGACTCGGAGGAAATAGAGGTAGAGAGGGGAGAGGTGGACGCCGCCCCGCTGCACACCGCCGCCTTGCCGCTCCTGCTCGCCCGCCGCCATCCTCGCCGCGGTCGTTTCCCCATCCGCCATGCCGCGCCGCTTCCCCATCCGCCACCCCACTGCGCGTCGCCGCCCCTTCGCTGGCCGTTGCCTGTCTCCTCCCCATGCCTTCGATGCCGCCCAACTCCAAGGCTTCCCCCACCGGCCGTGCGAGGAGCTCGGCCGGGCTGCTGCCGCCGTCGGCCGCCGTCGTGGCGCCGCCCTCCTCTCCCGCCTCACCCCGCCAACCGGCCTACAGGCACAGAGAGAGAGAGAAAGAGGAGTAACTGAGGAAGAGAAGAGAGGGAGAGTGACTTAGCCTGACATGTGGGGCCCACGTGGGGTCCCATGCTGACTCAGCCGCCACGTAGGATAAAACCGGGGTTAAAACCACTTAAGGTTCTATTGTGACCGGTTTTGATTAATTAAGGGATGCCGGATATCTGGTTTGCGGTTTGGGGACAATTTTGTAACTCGATGACAAGTTGAGGGACCTTCGGTGTACTTTTTCTAAACTTAATAAGGTTTA]
[+] EMBL AK109750 [GGTGCAGAGGGCCAGAGGCTAGCAACGCGAGGCGGGAAAGTGGAGGGCGGCCGGCGGCGCGACGGTGGCCGGTGCCCGACGGCGGCTGCTATAGCGGGAAACACGGCGACGCGGCGGCCCCAACGGTGATGTCATCGACTGCGTGCCGACGCACCTGCAGCCATCCGGTTCGGGATGAAGCAGCCACGCGCCGCCGACATCGTCCGCCCCGACTCCACCAACGATGGCTGCAACTCCTGCTCGCGCATGCCGAGGCGGCCTCTGTGCTGGCGCTCCTCCTGCGCGCGTTCGGCTGCCCTTGGCGAGCGGCGCACACCTTGGCCTCAGCCTCTGCTTCGCGGGGGCCGCGCCGTAGGCCGTGGACGTGCCGCGGCTGGTGCTCCACTTCGACAGCGCTGGGTCATGGAGTAGCAGAGCTCGAGCACGGGGCAGTGCTACAGAGCTCGGGGATTACGTCGTAGTTGAACCCGAACCCGAGATCCACGCACCCCTTCAGCTCCTCTAGGTCGTCGTTGACTCGTCGGTCAAGCTCGGCGCGTGCCGCCGCCGCCGTCACCCCCGCTCCTCGCCGTACACGCGCCGCCGCCGAAGACGACGACGCCGCAGGGCTCCTCCTTGGCGACCACCACCGGCTTCGTCCCCCGTGGTCACGCCGCCTCCCGCTGTACACCGCACCACACGTCTTCGGCCTCGACCTCGGCCGCCGCTTCCGCTCCGCTCGTGGCCTGCTACCGTCGTCGCCCCGCTACTCCGCCCGCCCTTCCGCGTTCCAACACGGCGAGCCATGCCCGGCGGCGAGAGGACCATCGCCGCGGCCGTGCAAATCCGGCAGCTGAGCGGCGGGATCCATACGGCAGCGGCGGAGGAGGAGGAGACCGGGAGATTGGCCGCCGCACGCTGCTCCTCTCCCGCGAGCCGCCGCGCGCCGCTCCTCTTCCACAGGCCGTCGCGCGCCGCTGCCTCCTCGTCGGTGAAGACTCGGAGGAAATAGAGGTAGAGAGGGGAGAGGTGGACGCCGCCCCGCTGCACACCGCCGCCTTGCCGCTCCTGCTCGCCCGCCGCCATCCTCGCCGCGGTCGTTTCCCCATCCGCCATGCCGCGCCGCTTCCCCATCCGCCACCCCACTGCGCGTCGCCGCCCCTTCGCTGGCCGTTGCCTGTCTCCTCCCCATGCCTTCGATGCCGCCCAACTCCAAGGCTTCCCCCACCGGCCGTGCGAGGAGCTCGGCCGGGCTGCTGCCGCCGTCGGCCGCCGTCGTGGCGCCGCCCTCCTCTCCCGCCTCACCCCGCCAACCGGCCTACAGGCACAGAGAGAGAGAGAAAGAGGAGTAACTGAGGAAGAGAAGAGAGGGAGAGTGACTTAGCCTGACATGTGGGGCCCACGTGGGGTCCCATGCTGACTCAGCCGCCACGTAGGATAAAACCGGGGTTAAAACCACTTAAGGTTCTATTGTGACCGGTTTTGATTAATTAAGGGATGCCGGATATCTGGTTTGCGGTTTGGGGACAATTTTGTAACTCGATGACAAGTTGAGGGACCTTCGGTGTACTTTTTCTAAACTTAATAAGGTTTA]
consensusID : consensus_304#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1065 fasta sequence
[CAAAACCAGATATCCCACGTCCCTTAATTAATCAAAACCAGTCACAAGAGGTCCCTCTTAATCCCGGTTTGGTCCTACGTGGCTGCCGAGTCCAGCGTGGGACCCATGTGGGGCCCACGTGTCATGGTAATCCACGTCATCACCCTTCCTTTTTCTCCTCTTCTCTCTTTCAGGGAGAGGCAAAGCGGCGGCCGGCGGGTGCAGGGCCAGAGGCCAGCAGGAGAGAGGAGGGCGACGGCGGCCGGCGCCCAGCGGCGGCAGCTGGCGGGAAACACGGCGACGCGGCGGCCCCGACGGCGATGTCATCGACTGCGTGCCGACGCACCTGCAGCCATCCGGTTCGGGATGAAGCAGCCACGCGTCGCCGGCGTCGTCCGCCGCGACTCCACCAATGACGACCGCGACTCCACCTGCTCGTGCATGCCGAGGCGGCCTCTGTGCCGACGCTTCTCCTGTGCGTGTTCGGCTGCCCCTGGCGAGCGACGTTAGACTCTGCTTCGCGGCGGCCGCGCCGGAGGCCGTGGACGTGCCGCGGCTGGTGCTCCACTTCGACAGCGCTGGGTCATGGAGTAGCAGAGCTTGAGCACGGGGGCAGTGCCGCAGAACTCAGGGATTACGTCGCAGCTGAACCCGAACCTGAGATCCACGCACCCCTTCAGCTCCTCCAGGTCGTCGTCGACTCGTCGGTCAGGCTCCGCGCGTGCCGCCGCCGCCGCCACCGCTCCCGCTCCTCGCCGTACATGCGCCGCCGCCGAAGACGACGACGCCGCAGGGCTTCTCCTTGGCGACCACCACCGGCTTCGTCCGCCGTGGCCACGCCGCCTCCAACTGTACCCCGCACCACACGTCCTCGGCCTCGACCTAGGCCACCGCTGCCGCTCCGCCCGTGGCCTGCTGCCGTCGCCGCCGCGGTGCTCCGCCCGCCCTTTCGTGGCTCCAACACATCCCGTCTCTCCCGCCTCCCCTTCTCGAGCTCCATAGTCCCCACAGATCTCAGCGGCGAGCTGTGCCCGGCGGCGAGAGGACCATCGCCGCGGCCGTGCAAATCCGGCAGCTGAGCGGCGT]
[-] EMBL AK120678 [CAAAACCAGATATCCCACGTCCCTTAATTAATCAAAACCAGTCACAAGAGGTCCCTCTTAATCCCGGTTTGGTCCTACGTGGCTGCCGAGTCCAGCGTGGGACCCATGTGGGGCCCACGTGTCATGGTAATCCACGTCATCACCCTTCCTTTTTCTCCTCTTCTCTCTTTCAGGGAGAGGCAAAGCGGCGGCCGGCGGGTGCAGGGCCAGAGGCCAGCAGGAGAGAGGAGGGCGACGGCGGCCGGCGCCCAGCGGCGGCAGCTGGCGGGAAACACGGCGACGCGGCGGCCCCGACGGCGATGTCATCGACTGCGTGCCGACGCACCTGCAGCCATCCGGTTCGGGATGAAGCAGCCACGCGTCGCCGGCGTCGTCCGCCGCGACTCCACCAATGACGACCGCGACTCCACCTGCTCGTGCATGCCGAGGCGGCCTCTGTGCCGACGCTTCTCCTGTGCGTGTTCGGCTGCCCCTGGCGAGCGACGTTAGACTCTGCTTCGCGGCGGCCGCGCCGGAGGCCGTGGACGTGCCGCGGCTGGTGCTCCACTTCGACAGCGCTGGGTCATGGAGTAGCAGAGCTTGAGCACGGGGGCAGTGCCGCAGAACTCAGGGATTACGTCGCAGCTGAACCCGAACCTGAGATCCACGCACCCCTTCAGCTCCTCCAGGTCGTCGTCGACTCGTCGGTCAGGCTCCGCGCGTGCCGCCGCCGCCGCCACCGCTCCCGCTCCTCGCCGTACATGCGCCGCCGCCGAAGACGACGACGCCGCAGGGCTTCTCCTTGGCGACCACCACCGGCTTCGTCCGCCGTGGCCACGCCGCCTCCAACTGTACCCCGCACCACACGTCCTCGGCCTCGACCTAGGCCACCGCTGCCGCTCCGCCCGTGGCCTGCTGCCGTCGCCGCCGCGGTGCTCCGCCCGCCCTTTCGTGGCTCCAACACATCCCGTCTCTCCCGCCTCCCCTTCTCGAGCTCCATAGTCCCCACAGATCTCAGCGGCGAGCTGTGCCCGGCGGCGAGAGGACCATCGCCGCGGCCGTGCAAATCCGGCAGCTGAGCGGCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_304#0 ------------------------------------------------------------
consensus_304#1 CAAAACCAGATATCCCACGTCCCTTAATTAATCAAAACCAGTCACAAGAGGTCCCTCTTA 60
consensus_304#0 ------------------------------------------------------------
consensus_304#1 ATCCCGGTTTGGTCCTACGTGGCTGCCGAGTCCAGCGTGGGACCCATGTGGGGCCCACGT 120
consensus_304#0 -----------------------------------------------------GGTGCAG 7
consensus_304#1 GTCATGGTAATCCACGTCATCACCCTTCCTTTTTCTCCTCTTCTCTCTTTCAGGGAGAGG 180
** * *
consensus_304#0 AGGGCCAGAGGCTAGCAA-CGCGAGGCGGGAAAGTGGAGGGCGGCCGGCGGCGCGACGGT 66
consensus_304#1 CAAAGCGGCGGCCGGCGGGTGCAGGGCCAGAGGCCAGCAGGAGAGAGGAGG-GCGACGGC 239
* * *** ** ** *** ** * ** * ** ** *******
consensus_304#0 GGCCGGTGCCCGACGGCGGCTGCTATAGCGGGAAACACGGCGACGCGGCGGCCCCAACGG 126
consensus_304#1 GGCCGGCGCCCAGCGGCGGCAGCTG--GCGGGAAACACGGCGACGCGGCGGCCCCGACGG 297
****** **** ******* *** **************************** ****
consensus_304#0 TGATGTCATCGACTGCGTGCCGACGCACCTGCAGCCATCCGGTTCGGGATGAAGCAGCCA 186
consensus_304#1 CGATGTCATCGACTGCGTGCCGACGCACCTGCAGCCATCCGGTTCGGGATGAAGCAGCCA 357
***********************************************************
consensus_304#0 CGCGCCGCCGACATCGTCCGCCCCGACTCCACCAACGATGGCTGCAACTCC---TGCTCG 243
consensus_304#1 CGCGTCGCCGGCGTCGTCCGCCGCGACTCCACCAATGACGACCGCGACTCCACCTGCTCG 417
**** ***** * ********* ************ ** * * ** ***** ******
consensus_304#0 CGCATGCCGAGGCGGCCTCTGTGCTGGCGCTCCTCCTGCGCGCGTTCGGCTGCCCTTGGC 303
consensus_304#1 TGCATGCCGAGGCGGCCTCTGTGCCGACGCTTCTCCTGTGCGTGTTCGGCTGCCCCTGGC 477
*********************** * **** ****** *** ************ ****
consensus_304#0 GAGCGGCGCACACCTTGGCCTCAGCCTCTGCTTCGCGGGGGCCGCGCCGTAGGCCGTGGA 363
consensus_304#1 GAGCGACG------------TTAGACTCTGCTTCGCGGCGGCCGCGCCGGAGGCCGTGGA 525
***** ** * ** ************* ********** **********
consensus_304#0 CGTGCCGCGGCTGGTGCTCCACTTCGACAGCGCTGGGTCATGGAGTAGCAGAGCTCGAGC 423
consensus_304#1 CGTGCCGCGGCTGGTGCTCCACTTCGACAGCGCTGGGTCATGGAGTAGCAGAGCTTGAGC 585
******************************************************* ****
consensus_304#0 ACGGGG-CAGTGCTACAGAGCTCGGGGATTACGTCGTAGTTGAACCCGAACCCGAGATCC 482
consensus_304#1 ACGGGGGCAGTGCCGCAGAACTCAGGGATTACGTCGCAGCTGAACCCGAACCTGAGATCC 645
****** ****** **** *** ************ ** ************ *******
consensus_304#0 ACGCACCCCTTCAGCTCCTCTAGGTCGTCGTTGACTCGTCGGTCAAGCTCGGCGCGTGCC 542
consensus_304#1 ACGCACCCCTTCAGCTCCTCCAGGTCGTCGTCGACTCGTCGGTCAGGCTCCGCGCGTGCC 705
******************** ********** ************* **** *********
consensus_304#0 GCCGCCGCCGTCACC---CCCGCTCCTCGCCGTACACGCGCCGCCGCCGAAGACGACGAC 599
consensus_304#1 GCCGCCGCCGCCACCGCTCCCGCTCCTCGCCGTACATGCGCCGCCGCCGAAGACGACGAC 765
********** **** ****************** ***********************
consensus_304#0 GCCGCAGGGCTCCTCCTTGGCGACCACCACCGGCTTCGTCCCCCGTGGTCACGCCGCCTC 659
consensus_304#1 GCCGCAGGGCTTCTCCTTGGCGACCACCACCGGCTTCGTCCGCCGTGGCCACGCCGCCTC 825
*********** ***************************** ****** ***********
consensus_304#0 CCGCTGTACACCGCACCACACGTCTTCGGCCTCGACCTCGGCCGCCGCTTCCGCTCCGCT 719
consensus_304#1 CAACTGTACCCCGCACCACACGTCCTCGGCCTCGACCTAGGCCACCGCTGCCGCTCCGCC 885
* ****** ************** ************* **** ***** *********
consensus_304#0 CGTGGCCTGCTACCGTCGTCGCCCCGCTACTCCGCCCGCCCTTCCGCG-TTCCAACACGG 778
consensus_304#1 CGTGGCCTGCTGCCGTCGCCGCCGCGGTGCTCCGCCCGCCCTTTCGTGGCTCCAACACAT 945
*********** ****** **** ** * ************** ** * ********
consensus_304#0 CGAGCCATGCCCGGCGGCGA-----GAGGACCATCGCCGCGGCCGTGCAAATCCGGCAGC 833
consensus_304#1 CCCGTCTCTCCCGCCTCCCCTTCTCGAGCTCCATAGTCCCCACAGATCTCAGCGGCGAGC 1005
* * * **** * * *** **** * * * * * * * * * ***
consensus_304#0 TGAGCGGCGGGATCCATACGGCAGCGGCGGAGGAGGAGGAGACCGGGAGATTGGCCGCCG 893
consensus_304#1 TGTGCC-CGGCGGCGAGAGGACCATCGCCGCGGCCGTGCAAATCCGGCAGCTGAGCGGCG 1064
** ** *** * * * * * ** * ** * * * * * ** ** ** **
consensus_304#0 CACGCTGCTCCTCTCCCGCGAGCCGCCGCGCGCCGCTCCTCTTCCACAGGCCGTCGCGCG 953
consensus_304#1 T----------------------------------------------------------- 1065
consensus_304#0 CCGCTGCCTCCTCGTCGGTGAAGACTCGGAGGAAATAGAGGTAGAGAGGGGAGAGGTGGA 1013
consensus_304#1 ------------------------------------------------------------
consensus_304#0 CGCCGCCCCGCTGCACACCGCCGCCTTGCCGCTCCTGCTCGCCCGCCGCCATCCTCGCCG 1073
consensus_304#1 ------------------------------------------------------------
consensus_304#0 CGGTCGTTTCCCCATCCGCCATGCCGCGCCGCTTCCCCATCCGCCACCCCACTGCGCGTC 1133
consensus_304#1 ------------------------------------------------------------
consensus_304#0 GCCGCCCCTTCGCTGGCCGTTGCCTGTCTCCTCCCCATGCCTTCGATGCCGCCCAACTCC 1193
consensus_304#1 ------------------------------------------------------------
consensus_304#0 AAGGCTTCCCCCACCGGCCGTGCGAGGAGCTCGGCCGGGCTGCTGCCGCCGTCGGCCGCC 1253
consensus_304#1 ------------------------------------------------------------
consensus_304#0 GTCGTGGCGCCGCCCTCCTCTCCCGCCTCACCCCGCCAACCGGCCTACAGGCACAGAGAG 1313
consensus_304#1 ------------------------------------------------------------
consensus_304#0 AGAGAGAAAGAGGAGTAACTGAGGAAGAGAAGAGAGGGAGAGTGACTTAGCCTGACATGT 1373
consensus_304#1 ------------------------------------------------------------
consensus_304#0 GGGGCCCACGTGGGGTCCCATGCTGACTCAGCCGCCACGTAGGATAAAACCGGGGTTAAA 1433
consensus_304#1 ------------------------------------------------------------
consensus_304#0 ACCACTTAAGGTTCTATTGTGACCGGTTTTGATTAATTAAGGGATGCCGGATATCTGGTT 1493
consensus_304#1 ------------------------------------------------------------
consensus_304#0 TGCGGTTTGGGGACAATTTTGTAACTCGATGACAAGTTGAGGGACCTTCGGTGTACTTTT 1553
consensus_304#1 ------------------------------------------------------------
consensus_304#0 TCTAAACTTAATAAGGTTTA 1573
consensus_304#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||