cluster # 3041

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Oryza sativa
cluster # 3041 cluster # 3041 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3041#0 length = 781 sequences # 1

consensus_3041#1 length = 712 sequences # 1

consensusID : consensus_3041#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 781
fasta sequence

                              [CAAGGGGGAAGAGAGAAGCTCCACTCTTCTCCACCCCAAGAGAATTGAAGCCAAGCATGGAGAATGGAGGGGAAGAAGATGACAGAGCAGGCCGATGCAAGAGGATTACCACGAGAATCANATGCANCCAAGAATGGNGCAGNGACCAAGCTGCAAGCTTTGAGGCTCGGCGAGGNCCTCTCCCTCCCTTCCGNAAGCTCCTNTNTCTCTCTCTCTCTCATNCATCATGTCTCCATTTTTTCCATCTAAAAGCTCTAATGCTTCTTCTGCTTCTAGNTCTACAAAACCCANAAGTCTCTATCGNTGTGGNGAAAAAAAAGTTTTTAAGTTNGATGTTCTCCTCCCTTTGCTTAGGATGNTAATTGNTCCACTAGGTGCACAGACCAGNNGATTACTAGCAGTAATTTTCTGAATCAGCTCGATTCTTTTCCAGAACCCCATTGTTCTTCTCCCTCCCTGGTGCATGCATGCATAGCAATAGGCAATGACAGAATTCANACCANAATCTCTTTCCCTTTCTCAATGCATCAGCACCTCCAATGTCAGCTGNTGTTTACTGCCTTTTGTCTTGCCATTACATGCCTGTGNCCCCTGCACATTGAGATGTGNGCGANGACTGATGACCATAGNTTTATCTCCTANGNATACTGGNCNCCCTATTTCTCAGACACTNTTTTAGNACCTCCTCAACCNNTCAGNCTTTTTAGCCCTAAANGTTAAAAAANGGGACCATNAAACCAAACCAAAACAATTGGCNCCTGCAGGNAACTACAGNAGTTTC]

[+] EMBL CA765059             [CAAGGGGGAAGAGAGAAGCTCCACTCTTCTCCACCCCAAGAGAATTGAAGCCAAGCATGGAGAATGGAGGGGAAGAAGATGACAGAGCAGGCCGATGCAAGAGGATTACCACGAGAATCANATGCANCCAAGAATGGNGCAGNGACCAAGCTGCAAGCTTTGAGGCTCGGCGAGGNCCTCTCCCTCCCTTCCGNAAGCTCCTNTNTCTCTCTCTCTCTCATNCATCATGTCTCCATTTTTTCCATCTAAAAGCTCTAATGCTTCTTCTGCTTCTAGNTCTACAAAACCCANAAGTCTCTATCGNTGTGGNGAAAAAAAAGTTTTTAAGTTNGATGTTCTCCTCCCTTTGCTTAGGATGNTAATTGNTCCACTAGGTGCACAGACCAGNNGATTACTAGCAGTAATTTTCTGAATCAGCTCGATTCTTTTCCAGAACCCCATTGTTCTTCTCCCTCCCTGGTGCATGCATGCATAGCAATAGGCAATGACAGAATTCANACCANAATCTCTTTCCCTTTCTCAATGCATCAGCACCTCCAATGTCAGCTGNTGTTTACTGCCTTTTGTCTTGCCATTACATGCCTGTGNCCCCTGCACATTGAGATGTGNGCGANGACTGATGACCATAGNTTTATCTCCTANGNATACTGGNCNCCCTATTTCTCAGACACTNTTTTAGNACCTCCTCAACCNNTCAGNCTTTTTAGCCCTAAANGTTAAAAAANGGGACCATNAAACCAAACCAAAACAATTGGCNCCTGCAGGNAACTACAGNAGTTTC]




>consensus_3041#0
CAAGGGGGAAGAGAGAAGCTCCACTCTTCTCCACCCCAAGAGAATTGAAGCCAAGCATGG
AGAATGGAGGGGAAGAAGATGACAGAGCAGGCCGATGCAAGAGGATTACCACGAGAATCA
NATGCANCCAAGAATGGNGCAGNGACCAAGCTGCAAGCTTTGAGGCTCGGCGAGGNCCTC
TCCCTCCCTTCCGNAAGCTCCTNTNTCTCTCTCTCTCTCATNCATCATGTCTCCATTTTT
TCCATCTAAAAGCTCTAATGCTTCTTCTGCTTCTAGNTCTACAAAACCCANAAGTCTCTA
TCGNTGTGGNGAAAAAAAAGTTTTTAAGTTNGATGTTCTCCTCCCTTTGCTTAGGATGNT
AATTGNTCCACTAGGTGCACAGACCAGNNGATTACTAGCAGTAATTTTCTGAATCAGCTC
GATTCTTTTCCAGAACCCCATTGTTCTTCTCCCTCCCTGGTGCATGCATGCATAGCAATA
GGCAATGACAGAATTCANACCANAATCTCTTTCCCTTTCTCAATGCATCAGCACCTCCAA
TGTCAGCTGNTGTTTACTGCCTTTTGTCTTGCCATTACATGCCTGTGNCCCCTGCACATT
GAGATGTGNGCGANGACTGATGACCATAGNTTTATCTCCTANGNATACTGGNCNCCCTAT
TTCTCAGACACTNTTTTAGNACCTCCTCAACCNNTCAGNCTTTTTAGCCCTAAANGTTAA
AAAANGGGACCATNAAACCAAACCAAAACAATTGGCNCCTGCAGGNAACTACAGNAGTTT
C

consensusID : consensus_3041#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 712
fasta sequence

                              [GAGAAGCTCCACTCTTCTCCACCCCAAGAGAATTGAAGCCAAGCATGGAGAATGGAGGGGAAGAAGATGACAGAGCAAGCCGATGCAAGAGGATTACCAGAGAATCAGATGCAACCAAGAATGGTGCAGCGACCAAGCTGCAAGCTTTGAGGCTCGTCGAGGACCTCTCCCTCCCTTCTGTGCAGGTGGTGGTGATGAGCGCCAACATGGGCTGTTCGCACTGCCGACAGCGGGTCACAAAGGTTGTCTCCAAGATGAACGGGTTGCTAGATTACATGGTGGATTTTGGGAAGAAGGAGGTGACAGTGAGAGGGACGATGGTGCACACCAAGAAGAAGAGGAAGCAACACAAGAAGAAGCATGAGGAAAACAAGAAGGGAATCGCTGCAAACTGGGAGAAGAAATCGTCTTCTCAGAGCAATGACAGCGCCAGGACGCTGGCCTGGTTTCTACGATGCTACAGTTCATAGCAACTACTACTATCTAGTGCATACTATAGTCTACATATAGTGTTACTTATATACTACTAATATATATAGATATATCTAGAAGCTATATAGCTGCTCGATTAATTGTTTATTTTTCTCTTTAGTTTCTTCTTGCAATTTCTTTCTTTCTCATGTTTTATTATTTTTCTTTTTGATTGAAAATAACGTATGATGGTAGGAAATGTGTATATTCTGCCCATAACTGTGCATTATAAAATCCTCTA]

[+] EMBL AK073201             [GAGAAGCTCCACTCTTCTCCACCCCAAGAGAATTGAAGCCAAGCATGGAGAATGGAGGGGAAGAAGATGACAGAGCAAGCCGATGCAAGAGGATTACCAGAGAATCAGATGCAACCAAGAATGGTGCAGCGACCAAGCTGCAAGCTTTGAGGCTCGTCGAGGACCTCTCCCTCCCTTCTGTGCAGGTGGTGGTGATGAGCGCCAACATGGGCTGTTCGCACTGCCGACAGCGGGTCACAAAGGTTGTCTCCAAGATGAACGGGTTGCTAGATTACATGGTGGATTTTGGGAAGAAGGAGGTGACAGTGAGAGGGACGATGGTGCACACCAAGAAGAAGAGGAAGCAACACAAGAAGAAGCATGAGGAAAACAAGAAGGGAATCGCTGCAAACTGGGAGAAGAAATCGTCTTCTCAGAGCAATGACAGCGCCAGGACGCTGGCCTGGTTTCTACGATGCTACAGTTCATAGCAACTACTACTATCTAGTGCATACTATAGTCTACATATAGTGTTACTTATATACTACTAATATATATAGATATATCTAGAAGCTATATAGCTGCTCGATTAATTGTTTATTTTTCTCTTTAGTTTCTTCTTGCAATTTCTTTCTTTCTCATGTTTTATTATTTTTCTTTTTGATTGAAAATAACGTATGATGGTAGGAAATGTGTATATTCTGCCCATAACTGTGCATTATAAAATCCTCTA]




>consensus_3041#1
GAGAAGCTCCACTCTTCTCCACCCCAAGAGAATTGAAGCCAAGCATGGAGAATGGAGGGG
AAGAAGATGACAGAGCAAGCCGATGCAAGAGGATTACCAGAGAATCAGATGCAACCAAGA
ATGGTGCAGCGACCAAGCTGCAAGCTTTGAGGCTCGTCGAGGACCTCTCCCTCCCTTCTG
TGCAGGTGGTGGTGATGAGCGCCAACATGGGCTGTTCGCACTGCCGACAGCGGGTCACAA
AGGTTGTCTCCAAGATGAACGGGTTGCTAGATTACATGGTGGATTTTGGGAAGAAGGAGG
TGACAGTGAGAGGGACGATGGTGCACACCAAGAAGAAGAGGAAGCAACACAAGAAGAAGC
ATGAGGAAAACAAGAAGGGAATCGCTGCAAACTGGGAGAAGAAATCGTCTTCTCAGAGCA
ATGACAGCGCCAGGACGCTGGCCTGGTTTCTACGATGCTACAGTTCATAGCAACTACTAC
TATCTAGTGCATACTATAGTCTACATATAGTGTTACTTATATACTACTAATATATATAGA
TATATCTAGAAGCTATATAGCTGCTCGATTAATTGTTTATTTTTCTCTTTAGTTTCTTCT
TGCAATTTCTTTCTTTCTCATGTTTTATTATTTTTCTTTTTGATTGAAAATAACGTATGA
TGGTAGGAAATGTGTATATTCTGCCCATAACTGTGCATTATAAAATCCTCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3041#0      CAAGGGGGAAGAGAGAAGCTCCACTCTTCTCCACCCCAAGAGAATTGAAGCCAAGCATGG 60
consensus_3041#1      ------------GAGAAGCTCCACTCTTCTCCACCCCAAGAGAATTGAAGCCAAGCATGG 48
                                  ************************************************

consensus_3041#0      AGAATGGAGGGGAAGAAGATGACAGAGCAGGCCGATGCAAGAGGATTACCACGAGAATCA 120
consensus_3041#1      AGAATGGAGGGGAAGAAGATGACAGAGCAAGCCGATGCAAGAGGATTACCA-GAGAATCA 107
                      ***************************** ********************* ********

consensus_3041#0      NATGCANCCAAGAATGGNGCAGNGACCAAGCTGCAAGCTTTGAGGCTCGGCGAGGNCCTC 180
consensus_3041#1      GATGCAACCAAGAATGGTGCAGCGACCAAGCTGCAAGCTTTGAGGCTCGTCGAGGACCTC 167
                       ***** ********** **** ************************** ***** ****

consensus_3041#0      TCCCTCCCTTCCGNAAGCTCCTNTNTCTCTCTCTCTCTCATNCATCATGTCTCCATTTTT 240
consensus_3041#1      TCCCTCCCTTCTGTGCAGGTGGTGGTGATGAGCGCCAACATGGGC--TGTTCGCACT--- 222
                      *********** *            *      * *   ***      ***   ** *   

consensus_3041#0      TCCATCTAAAAGCTCTAATGCTTCTTCTGCTTCTAGNTCTACAAAACCCANAAGTCTCTA 300
consensus_3041#1      GCCGACAGCGGGTCACAAAGGTTGT----CTCCAAGATGAACGGGTTGCTAGATTACATG 278
                       **  *     *    ** * ** *    ** * ** *  **      *   * *   * 

consensus_3041#0      -TCGNTGTGGNGAAAAAAAAGTTTTTAAGTTNGATGTTCTCCTCCCTTTGCTTAGGATGN 359
consensus_3041#1      GTGGATTTTGGGAAGAAGGAGGTGACA-GTGAGAGGGACGATGGTGCACACCAAGAAGAA 337
                       * * * * * *** **  ** *   * **  ** *  *           *  ** *   

consensus_3041#0      TAATTGNTCCACTAGGTGCACAGACCAGNNGATTACTAGCAGTAATTTTCTGAATCAGCT 419
consensus_3041#1      GAG--GAAGCAACACAAGAAGAAGCATGAGGAAAACAAGAAGGGAATCGCTGCA--AACT 393
                       *   *   **  *   * * *  *  *  **  ** ** **  * *  *** *  * **

consensus_3041#0      CGATTCTTTTCCAGAACCCCATTGTTCTTCTCCCTCCCTGGTGCATGCATGCATAGCAAT 479
consensus_3041#1      GGG---------AGAAG--AAATCGTCTTCTC--------------------AGAGCAAT 422
                       *          ****    * *  *******                    * ******

consensus_3041#0      AGGCAATGACAGAATTCANACCANAATCTCTTTCCCTTTCTCAATGCATCAGCACCTCCA 539
consensus_3041#1      -GACAGCGCCAGGACGCTGGCCTGG--TTTCTACGATGCTACAGTTCAT-AGCAACT--A 476
                       * **  * *** *  *   **      *  * *  *    ** * *** **** **  *

consensus_3041#0      ATGTCAGCTGNTGTTTACTGCCTTTTGTCT-TGCCATTACATGCCTGTGNCCCCTGCACA 598
consensus_3041#1      CTACTATCTAGTGCATACTATAGTCTACATATAGTGTTACTTATATACTACTAATATATA 536
                       *   * **  **  ****    * *   * *    **** *   *    *   *  * *

consensus_3041#0      TTGAGATGTGNGCGANGACTGATGACCATAGNTTTATCTCCTANGNATACTGGNCNCCCT 658
consensus_3041#1      TAGATATATCTA-GAAGCTATATAGCT---GCTCGATTAATTGTTTATTTTTCTCTTTAG 592
                      * ** ** *    ** *    **  *    * *  **    *    **  *   *     

consensus_3041#0      ATTTCTCAGACACTNTTTTAGNACCTCCTCAACCNNTCAGNCTTTTTAGCCCTAAANGTT 718
consensus_3041#1      TTTCTTCTTGCAATTTCTT----TCTTTCTCATGTTTTATTATTTTTCTTTTTGATTG-- 646
                       **  **   ** * * **     **     *    * *   *****     * *  *  

consensus_3041#0      AAAAAANGGGACCATNAAACCAAACCAAAACAATTGGCNCCTG-CAGGNAACTACAGNAG 777
consensus_3041#1      AAAATAACGTATGATGGTAGGAAATGTGTATATTCTGCCCATAACTGTGCATTATAAAAT 706
                      **** *  * *  **   *  ***     * * *  ** * *  * *   * ** *  * 

consensus_3041#0      TTTC-- 781
consensus_3041#1      CCTCTA 712
                        **