cluster # 3052

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Oryza sativa
cluster # 3052 cluster # 3052 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3052#0 length = 333 sequences # 1

consensus_3052#1 length = 277 sequences # 1

consensusID : consensus_3052#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAATAATTTCCCATCACCTGTGCGTTTGACCCCACCCCCACTGGGTTCCTATTTTGGAAAACCATACAAGTTTGGGTTTGAAAACAAGTTTTTGAAGGGTTTGTTTTGAAAACAAAACTTTTCATGCCGCAACTGACAAATTTTTGTTTTAAAGCATTTTGCAGCGTTAAAAATCCACAAAATTCGGGTACATTAAATATACAGCAGCATTGTTTTCAACCTTTGAGCATTTTTTTTTTCAACGATCACAACCCATTAGCTAACAACATTTAAGCTTTACTCCTTTAATCCAT]

[+] EMBL CF316126             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAATAATTTCCCATCACCTGTGCGTTTGACCCCACCCCCACTGGGTTCCTATTTTGGAAAACCATACAAGTTTGGGTTTGAAAACAAGTTTTTGAAGGGTTTGTTTTGAAAACAAAACTTTTCATGCCGCAACTGACAAATTTTTGTTTTAAAGCATTTTGCAGCGTTAAAAATCCACAAAATTCGGGTACATTAAATATACAGCAGCATTGTTTTCAACCTTTGAGCATTTTTTTTTTCAACGATCACAACCCATTAGCTAACAACATTTAAGCTTTACTCCTTTAATCCAT]




>consensus_3052#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAATAATTTCCCATCACCTG
TGCGTTTGACCCCACCCCCACTGGGTTCCTATTTTGGAAAACCATACAAGTTTGGGTTTG
AAAACAAGTTTTTGAAGGGTTTGTTTTGAAAACAAAACTTTTCATGCCGCAACTGACAAA
TTTTTGTTTTAAAGCATTTTGCAGCGTTAAAAATCCACAAAATTCGGGTACATTAAATAT
ACAGCAGCATTGTTTTCAACCTTTGAGCATTTTTTTTTTCAACGATCACAACCCATTAGC
TAACAACATTTAAGCTTTACTCCTTTAATCCAT

consensusID : consensus_3052#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTGGAAAACCATACAAGTTTGGTTTTGAAAACAAGTTTTTGAAGGGTTTGTTTTGAAAACAAAACTTTTCTTGCCGCAACTGACAAATTTTTGTTTCAAAACATTTTCCCGCGTTAAAAGTTTACAAAATTCGGGTCCCTTAAATTTACCGCACCATTGTTTTCACCCTTTGAGCATTTTTTTTTACAACGATCCCAACCCCTCAGTTAACAACATTTAAG]

[+] EMBL CF320254             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTGGAAAACCATACAAGTTTGGTTTTGAAAACAAGTTTTTGAAGGGTTTGTTTTGAAAACAAAACTTTTCTTGCCGCAACTGACAAATTTTTGTTTCAAAACATTTTCCCGCGTTAAAAGTTTACAAAATTCGGGTCCCTTAAATTTACCGCACCATTGTTTTCACCCTTTGAGCATTTTTTTTTACAACGATCCCAACCCCTCAGTTAACAACATTTAAG]




>consensus_3052#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTGG
AAAACCATACAAGTTTGGTTTTGAAAACAAGTTTTTGAAGGGTTTGTTTTGAAAACAAAA
CTTTTCTTGCCGCAACTGACAAATTTTTGTTTCAAAACATTTTCCCGCGTTAAAAGTTTA
CAAAATTCGGGTCCCTTAAATTTACCGCACCATTGTTTTCACCCTTTGAGCATTTTTTTT
TACAACGATCCCAACCCCTCAGTTAACAACATTTAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3052#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAATAATTTCCCATCACCTG 60
consensus_3052#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-------TTTTTTTTT----- 48
                      ***************************************       ***    *      

consensus_3052#0      TGCGTTTGACCCCACCCCCACTGGGTTCCTATTTTGGAAAACCATACAAGTTTGGGTTTG 120
consensus_3052#1      -------------------------TTTTTATTTTGGAAAACCATACAAGTTTGGTTTTG 83
                                               **  ************************** ****

consensus_3052#0      AAAACAAGTTTTTGAAGGGTTTGTTTTGAAAACAAAACTTTTCATGCCGCAACTGACAAA 180
consensus_3052#1      AAAACAAGTTTTTGAAGGGTTTGTTTTGAAAACAAAACTTTTCTTGCCGCAACTGACAAA 143
                      ******************************************* ****************

consensus_3052#0      TTTTTGTTTTAAAGCATTTTGCAGCGTTAAAAATCCACAAAATTCGGGTACATTAAATAT 240
consensus_3052#1      TTTTTGTTTCAAAACATTTTCCCGCGTTAAAAGTTTACAAAATTCGGGTCCCTTAAATTT 203
                      ********* *** ****** * ********* *  ************* * ****** *

consensus_3052#0      ACAGCAGCATTGTTTTCAACCTTTGAGCATTTTTTTTTTCAACGATCACAACCCATTAGC 300
consensus_3052#1      ACCGCACCATTGTTTTCACCCTTTGAGCATTTTTTTTTACAACGATCCCAACCCCTCAGT 263
                      ** *** *********** ******************* ******** ****** * ** 

consensus_3052#0      TAACAACATTTAAGCTTTACTCCTTTAATCCAT 333
consensus_3052#1      TAACAACATTTAAG------------------- 277
                      **************