cluster # 309

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Oryza sativa
cluster # 309 cluster # 309 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_309#0 length = 1549 sequences # 1

consensus_309#1 length = 425 sequences # 1

consensusID : consensus_309#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1549
fasta sequence

                              [AACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACTGCTCGTCGCTGTGGCGCGTCCGGCTCGAGGCGAACCGGCTCTCCGGCGAGATTCCAGCGGGGTTCGGCGCGATACGGAATCTGACGTACATGGACTTGAGCTCCAACTCGCTCACCGGCGGCGGCATTCCGGCCGACCTGGTCGCTTCTCCCAGCCTTGAGTACTTCAACGTCTCCGGCAACCTGGTCGGCGGCGCGCTGCCGGACATGGCGTGGCGGGGGCCGAAGCTGCAGGTGTTCGCGGCGAGCAGATGCGGTCTGGTCGGCGAGCTCCCGGCGTTCGGCGCCACCGGGTGCGCGAACCTGTACCGGCTAGAGTTGGCCGGGAACGCGCTGGGCGGCGGGATCCCCGGCGACATTGGCAGCTGCAAGCGGCTGGTGAGCTTGAGGCTGCAGCACAACGAGCTCACCGGAGAGATACCGGCGGCGATCGCCGCGCTGCCGTCGATCACCGAGGTCGACCTGTCCTGGAACGCGCTCACCGGCACCGTCCCGCCGGGGTTCACCAACTGCACGACGCTGGAGACGTTCGACGTGTCGTTCAACCACCTGGCGCCGGCCGAGCCGTCGTCGGACGCCGGCGAACGCGGCAGCCCCGCGCGGCACACGGCGGCGGCGGCAAGAGGACGGTGGCCGAGGTGGAGGTGCTCGGCCACCTCCGCCACCGCAACATCGTCCGGCTGCTGGGGTGGTGCACCAACGGCGAGTCCACGATGCTGCTCTACGAGTACATGCCCAACGGCAGCCTCGACGAGCTCCTCCACGGCGCCGCCGCCAAGGCGCGGCCGGGCTGGGACGCCCGGTACAAGATCGCCGTCGGCGTCGCGCAGGGCGTCAGCTACCTCCACCACGACTGCCTCCCCGCCATCGCGCACCGCGACATCAAGCCCAGCAACATCCTCCTCGACGACGACATGGAGGCACGCGTCGCCGACTTCGGCGTCGCCAAGGCGCTCCAGAGCGCCGCCCCCATGTCCGTCGTCGCCGGCTCATGCGGCTACATTGCACCAGAGTACACGTACACTCTAAAAGTGAACGAGAAGAGCGATGTGTACAGCTTCGGTGTGGTACTATTGGAGATCCTGACGGGACGGCGGTCGGCGGAGGCGGAGTACGGGGAGGGGAACAACATCGTGGACTGGGTGCGGCGGAAGGTGGCCGGAGGCGGGGTGGGCGACGTGATCGACGCTGCGGCGTGGGCCGACAATGATGTCGGTGGCACGCGGGACGAGATGGCGCTGGCGCTTAGGGTGGCGCTGCTGTGCACCAGCCGGTGCCCGCAGGAGCGGCCGTCGATGAGGGAGGTGCTGTCCATGCTGCAGGAGGCCAGGCCGAAACGGAAGAACTCGGCCAAGAAGCAGGTTAAGTAAAATGGGTGATGGTTAAGTCTTTAGCAGAAAGAAGAACTAATATATATGGTGTGCTCTTCGTGTGCAGTGTGTGTTGTGTATGTATAATTAACTTATTTAGTTACTGTCATGAAT]

[+] EMBL AK105581             [AACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACTGCTCGTCGCTGTGGCGCGTCCGGCTCGAGGCGAACCGGCTCTCCGGCGAGATTCCAGCGGGGTTCGGCGCGATACGGAATCTGACGTACATGGACTTGAGCTCCAACTCGCTCACCGGCGGCGGCATTCCGGCCGACCTGGTCGCTTCTCCCAGCCTTGAGTACTTCAACGTCTCCGGCAACCTGGTCGGCGGCGCGCTGCCGGACATGGCGTGGCGGGGGCCGAAGCTGCAGGTGTTCGCGGCGAGCAGATGCGGTCTGGTCGGCGAGCTCCCGGCGTTCGGCGCCACCGGGTGCGCGAACCTGTACCGGCTAGAGTTGGCCGGGAACGCGCTGGGCGGCGGGATCCCCGGCGACATTGGCAGCTGCAAGCGGCTGGTGAGCTTGAGGCTGCAGCACAACGAGCTCACCGGAGAGATACCGGCGGCGATCGCCGCGCTGCCGTCGATCACCGAGGTCGACCTGTCCTGGAACGCGCTCACCGGCACCGTCCCGCCGGGGTTCACCAACTGCACGACGCTGGAGACGTTCGACGTGTCGTTCAACCACCTGGCGCCGGCCGAGCCGTCGTCGGACGCCGGCGAACGCGGCAGCCCCGCGCGGCACACGGCGGCGGCGGCAAGAGGACGGTGGCCGAGGTGGAGGTGCTCGGCCACCTCCGCCACCGCAACATCGTCCGGCTGCTGGGGTGGTGCACCAACGGCGAGTCCACGATGCTGCTCTACGAGTACATGCCCAACGGCAGCCTCGACGAGCTCCTCCACGGCGCCGCCGCCAAGGCGCGGCCGGGCTGGGACGCCCGGTACAAGATCGCCGTCGGCGTCGCGCAGGGCGTCAGCTACCTCCACCACGACTGCCTCCCCGCCATCGCGCACCGCGACATCAAGCCCAGCAACATCCTCCTCGACGACGACATGGAGGCACGCGTCGCCGACTTCGGCGTCGCCAAGGCGCTCCAGAGCGCCGCCCCCATGTCCGTCGTCGCCGGCTCATGCGGCTACATTGCACCAGAGTACACGTACACTCTAAAAGTGAACGAGAAGAGCGATGTGTACAGCTTCGGTGTGGTACTATTGGAGATCCTGACGGGACGGCGGTCGGCGGAGGCGGAGTACGGGGAGGGGAACAACATCGTGGACTGGGTGCGGCGGAAGGTGGCCGGAGGCGGGGTGGGCGACGTGATCGACGCTGCGGCGTGGGCCGACAATGATGTCGGTGGCACGCGGGACGAGATGGCGCTGGCGCTTAGGGTGGCGCTGCTGTGCACCAGCCGGTGCCCGCAGGAGCGGCCGTCGATGAGGGAGGTGCTGTCCATGCTGCAGGAGGCCAGGCCGAAACGGAAGAACTCGGCCAAGAAGCAGGTTAAGTAAAATGGGTGATGGTTAAGTCTTTAGCAGAAAGAAGAACTAATATATATGGTGTGCTCTTCGTGTGCAGTGTGTGTTGTGTATGTATAATTAACTTATTTAGTTACTGTCATGAAT]




>consensus_309#0
AACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATG
CCGACTGCTCGTCGCTGTGGCGCGTCCGGCTCGAGGCGAACCGGCTCTCCGGCGAGATTC
CAGCGGGGTTCGGCGCGATACGGAATCTGACGTACATGGACTTGAGCTCCAACTCGCTCA
CCGGCGGCGGCATTCCGGCCGACCTGGTCGCTTCTCCCAGCCTTGAGTACTTCAACGTCT
CCGGCAACCTGGTCGGCGGCGCGCTGCCGGACATGGCGTGGCGGGGGCCGAAGCTGCAGG
TGTTCGCGGCGAGCAGATGCGGTCTGGTCGGCGAGCTCCCGGCGTTCGGCGCCACCGGGT
GCGCGAACCTGTACCGGCTAGAGTTGGCCGGGAACGCGCTGGGCGGCGGGATCCCCGGCG
ACATTGGCAGCTGCAAGCGGCTGGTGAGCTTGAGGCTGCAGCACAACGAGCTCACCGGAG
AGATACCGGCGGCGATCGCCGCGCTGCCGTCGATCACCGAGGTCGACCTGTCCTGGAACG
CGCTCACCGGCACCGTCCCGCCGGGGTTCACCAACTGCACGACGCTGGAGACGTTCGACG
TGTCGTTCAACCACCTGGCGCCGGCCGAGCCGTCGTCGGACGCCGGCGAACGCGGCAGCC
CCGCGCGGCACACGGCGGCGGCGGCAAGAGGACGGTGGCCGAGGTGGAGGTGCTCGGCCA
CCTCCGCCACCGCAACATCGTCCGGCTGCTGGGGTGGTGCACCAACGGCGAGTCCACGAT
GCTGCTCTACGAGTACATGCCCAACGGCAGCCTCGACGAGCTCCTCCACGGCGCCGCCGC
CAAGGCGCGGCCGGGCTGGGACGCCCGGTACAAGATCGCCGTCGGCGTCGCGCAGGGCGT
CAGCTACCTCCACCACGACTGCCTCCCCGCCATCGCGCACCGCGACATCAAGCCCAGCAA
CATCCTCCTCGACGACGACATGGAGGCACGCGTCGCCGACTTCGGCGTCGCCAAGGCGCT
CCAGAGCGCCGCCCCCATGTCCGTCGTCGCCGGCTCATGCGGCTACATTGCACCAGAGTA
CACGTACACTCTAAAAGTGAACGAGAAGAGCGATGTGTACAGCTTCGGTGTGGTACTATT
GGAGATCCTGACGGGACGGCGGTCGGCGGAGGCGGAGTACGGGGAGGGGAACAACATCGT
GGACTGGGTGCGGCGGAAGGTGGCCGGAGGCGGGGTGGGCGACGTGATCGACGCTGCGGC
GTGGGCCGACAATGATGTCGGTGGCACGCGGGACGAGATGGCGCTGGCGCTTAGGGTGGC
GCTGCTGTGCACCAGCCGGTGCCCGCAGGAGCGGCCGTCGATGAGGGAGGTGCTGTCCAT
GCTGCAGGAGGCCAGGCCGAAACGGAAGAACTCGGCCAAGAAGCAGGTTAAGTAAAATGG
GTGATGGTTAAGTCTTTAGCAGAAAGAAGAACTAATATATATGGTGTGCTCTTCGTGTGC
AGTGTGTGTTGTGTATGTATAATTAACTTATTTAGTTACTGTCATGAAT

consensusID : consensus_309#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 425
fasta sequence

                              [CCGCGTTCCAGAGGCTGAGCTTCACCGCCGACGACGTGGCGAGGTGCGTCGAGGGGAGCGACGGCATCGTCGGCGCCGGGTCGTCGGGGACGGTGTACCGCGCCAAGATGCCCAATGGCGAGGTCATCGCCGTGAAGAAGCTGTGGCAGGCGCCGGCGGCANGAAGGAGGCAGCCGCACCGACGGAGCAGAACCAGAAGCTCCGGCAAGACAGCGACGGCGGCGGCGGCGGCAAGAGGACNGTGGCCGAGGTGGAGGTGCTCGGCCACCTCCGCCACCGCAACATCGTCCGGCTGCTGGGGTGGTGCACCAACGGCGAGTCCACGATGCTGCTCTACGAGTACATGCCCAACGGCAGCCTTCGACGANTCCTCCANGGCGCCGCGCCAAAGGCGGCCGGGCTTGGACGCCGGTACAAGATTGCCG]

[+] EMBL C72775               [CCGCGTTCCAGAGGCTGAGCTTCACCGCCGACGACGTGGCGAGGTGCGTCGAGGGGAGCGACGGCATCGTCGGCGCCGGGTCGTCGGGGACGGTGTACCGCGCCAAGATGCCCAATGGCGAGGTCATCGCCGTGAAGAAGCTGTGGCAGGCGCCGGCGGCANGAAGGAGGCAGCCGCACCGACGGAGCAGAACCAGAAGCTCCGGCAAGACAGCGACGGCGGCGGCGGCGGCAAGAGGACNGTGGCCGAGGTGGAGGTGCTCGGCCACCTCCGCCACCGCAACATCGTCCGGCTGCTGGGGTGGTGCACCAACGGCGAGTCCACGATGCTGCTCTACGAGTACATGCCCAACGGCAGCCTTCGACGANTCCTCCANGGCGCCGCGCCAAAGGCGGCCGGGCTTGGACGCCGGTACAAGATTGCCG]




>consensus_309#1
CCGCGTTCCAGAGGCTGAGCTTCACCGCCGACGACGTGGCGAGGTGCGTCGAGGGGAGCG
ACGGCATCGTCGGCGCCGGGTCGTCGGGGACGGTGTACCGCGCCAAGATGCCCAATGGCG
AGGTCATCGCCGTGAAGAAGCTGTGGCAGGCGCCGGCGGCANGAAGGAGGCAGCCGCACC
GACGGAGCAGAACCAGAAGCTCCGGCAAGACAGCGACGGCGGCGGCGGCGGCAAGAGGAC
NGTGGCCGAGGTGGAGGTGCTCGGCCACCTCCGCCACCGCAACATCGTCCGGCTGCTGGG
GTGGTGCACCAACGGCGAGTCCACGATGCTGCTCTACGAGTACATGCCCAACGGCAGCCT
TCGACGANTCCTCCANGGCGCCGCGCCAAAGGCGGCCGGGCTTGGACGCCGGTACAAGAT
TGCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_309#0      AACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATG 60
consensus_309#1      ------------------------------------------------------------
                                                                                 

consensus_309#0      CCGACTGCTCGTCGCTGTGGCGCGTCCGGCTCGAGGCGAACCGGCTCTCCGGCGAGATTC 120
consensus_309#1      ------------------------------------------------------------
                                                                                 

consensus_309#0      CAGCGGGGTTCGGCGCGATACGGAATCTGACGTACATGGACTTGAGCTCCAACTCGCTCA 180
consensus_309#1      ------------------------------------------------------------
                                                                                 

consensus_309#0      CCGGCGGCGGCATTCCGGCCGACCTGGTCGCTTCTCCCAGCCTTGAGTACTTCAACGTCT 240
consensus_309#1      ------------------------------------------------------------
                                                                                 

consensus_309#0      CCGGCAACCTGGTCGGCGGCGCGCTGCCGGACATGGCGTGGCGGGGGCCGAAGCTGCAGG 300
consensus_309#1      ------------------------------------------------------------
                                                                                 

consensus_309#0      TGTTCGCGGCGAGCAGATGCGGTCTGGTCGGCGAGCTCCCGGCGTTCGGCGCCACCGGGT 360
consensus_309#1      ------------------------------------------------------------
                                                                                 

consensus_309#0      GCGCGAACCTGTACCGGCTAGAGTTGGCCGGGAACGCGCTGGGCGGCGGGATCCCCGGCG 420
consensus_309#1      ------------------------------------------------------------
                                                                                 

consensus_309#0      ACATTGGCAGCTGCAAGCGGCTGGTGAGCTTGA--GGCTGCAGCACAACGAGCTCACCGG 478
consensus_309#1      ------CCGCGTTCCAGAGGC---TGAGCTTCACCGCCGACGACGTGGCGAGGTGCGTCG 51
                            *   * * ** ***   ******* *  * *  *  *    **** *     *

consensus_309#0      AGAGATACCGGCGGCGATCGCCGCGCTGCCGTCGATCACCGAGGTCGACCTGTCCTGG-A 537
consensus_309#1      AGGGG-AGCGACGGC-ATCGTCGG--CGCCG--GGTCGTCGGGGACGGTGTACCGCGCCA 105
                     ** *  * ** **** **** **    ****  * **  ** ** **   *  *  *  *

consensus_309#0      ACGCGCTCACCGGCACCGTC-CCGCCGGGGTTCACCAACTGCACGACGCTGGAGACGTTC 596
consensus_309#1      AGATGCCCAATGGCGAGGTCATCGCCGTGAAGAAGCTGTGGCA-GGCGCCGGCGGC---- 160
                     *   ** **  ***   ***  ***** *    * *    *** * *** ** * *    

consensus_309#0      GACGTGTCGTTCAACCACCTGGCGCCGGCCGAGCCGTCGTCGGACGCCGGCGAACGCGGC 656
consensus_309#1      -ANGAAGGAGGCAGCC-----GCACCGACGGAGCAGA-ACCAGAAGCT--CCGGCAAGAC 211
                      * *       ** **     ** *** * **** *    * ** **   *   *  * *

consensus_309#0      AGCCCCGCGCGGCACACGGCGGCGGCGGCAAGAGGACGGTGGCCGAGGTGGAGGTGCTCG 716
consensus_309#1      AGCGACG--------GCGGCGGCGGCGGCAAGAGGACNGTGGCCGAGGTGGAGGTGCTCG 263
                     ***  **         ********************* **********************

consensus_309#0      GCCACCTCCGCCACCGCAACATCGTCCGGCTGCTGGGGTGGTGCACCAACGGCGAGTCCA 776
consensus_309#1      GCCACCTCCGCCACCGCAACATCGTCCGGCTGCTGGGGTGGTGCACCAACGGCGAGTCCA 323
                     ************************************************************

consensus_309#0      CGATGCTGCTCTACGAGTACATGCCCAACGGCAGCCT-CGACGAGCTCCTCCACGGCGCC 835
consensus_309#1      CGATGCTGCTCTACGAGTACATGCCCAACGGCAGCCTTCGACGAN-TCCTCCANGGCGCC 382
                     ************************************* ******  ******* ******

consensus_309#0      GCCGCCAAGGCGCGGCCGGGCTGGGACGCCCGGTACAAGATCGCCGTCGGCGTCGCGCAG 895
consensus_309#1      GC-GCCAAAG-GCGGCCGGGCTTGGACGCC-GGTACAAGATTGCCG-------------- 425
                     ** ***** * *********** ******* ********** ****              

consensus_309#0      GGCGTCAGCTACCTCCACCACGACTGCCTCCCCGCCATCGCGCACCGCGACATCAAGCCC 955
consensus_309#1      ------------------------------------------------------------
                                                                                 

consensus_309#0      AGCAACATCCTCCTCGACGACGACATGGAGGCACGCGTCGCCGACTTCGGCGTCGCCAAG 1015
consensus_309#1      ------------------------------------------------------------
                                                                                 

consensus_309#0      GCGCTCCAGAGCGCCGCCCCCATGTCCGTCGTCGCCGGCTCATGCGGCTACATTGCACCA 1075
consensus_309#1      ------------------------------------------------------------
                                                                                 

consensus_309#0      GAGTACACGTACACTCTAAAAGTGAACGAGAAGAGCGATGTGTACAGCTTCGGTGTGGTA 1135
consensus_309#1      ------------------------------------------------------------
                                                                                 

consensus_309#0      CTATTGGAGATCCTGACGGGACGGCGGTCGGCGGAGGCGGAGTACGGGGAGGGGAACAAC 1195
consensus_309#1      ------------------------------------------------------------
                                                                                 

consensus_309#0      ATCGTGGACTGGGTGCGGCGGAAGGTGGCCGGAGGCGGGGTGGGCGACGTGATCGACGCT 1255
consensus_309#1      ------------------------------------------------------------
                                                                                 

consensus_309#0      GCGGCGTGGGCCGACAATGATGTCGGTGGCACGCGGGACGAGATGGCGCTGGCGCTTAGG 1315
consensus_309#1      ------------------------------------------------------------
                                                                                 

consensus_309#0      GTGGCGCTGCTGTGCACCAGCCGGTGCCCGCAGGAGCGGCCGTCGATGAGGGAGGTGCTG 1375
consensus_309#1      ------------------------------------------------------------
                                                                                 

consensus_309#0      TCCATGCTGCAGGAGGCCAGGCCGAAACGGAAGAACTCGGCCAAGAAGCAGGTTAAGTAA 1435
consensus_309#1      ------------------------------------------------------------
                                                                                 

consensus_309#0      AATGGGTGATGGTTAAGTCTTTAGCAGAAAGAAGAACTAATATATATGGTGTGCTCTTCG 1495
consensus_309#1      ------------------------------------------------------------
                                                                                 

consensus_309#0      TGTGCAGTGTGTGTTGTGTATGTATAATTAACTTATTTAGTTACTGTCATGAAT 1549
consensus_309#1      ------------------------------------------------------