cluster # 3091

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Oryza sativa
cluster # 3091 cluster # 3091 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3091#0 length = 592 sequences # 1

consensus_3091#1 length = 210 sequences # 1

consensusID : consensus_3091#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 592
fasta sequence

                              [AATCCGAAGCCAGAAGAATCCAAGCNGACANGCTCGGGCTCCCCACCGTGAAACCTCCCAAGAACTTTGCCTGCCAGCCTGCATAAACAAGCAGAGGGATGGAGACCATCTGCCATCCTTACGTCTTCAAGATACCTGGCCTCCGAGTTGNCGCCCATGGAACAATAAAGTTGGAGCTTCAGGCTGCAACATATGAGGAACAGAGCATGCCTGACTGACTGACCAGCGGAAGGAATGCCTGGATATGGATTTNTGCTTGGGTGAGATGCTGACTGCTGGAAGGATGATTAATGAATGCACTGGGTTGCATGCTGGGACTGGCAGGGCACAAAGTGGTCGCAAGTGCATGCCATCCGCGNCAGTTGTCCTGGGGGGATACTGAGAAGTTTTGCTTAGAGGATGTCTCCACGTTTTGTTGTGTGTGCACGGCTGGTTTGTGTTTCATGAAAAGGCAGAGTGCTGTTGTATCAAAACATGCATGATTGATACCCATTTGTATGAACCTTGAGACGNAACTGGAACTTGGTGTGCATTGGCAATGGACANCCCCTGAAATGAGTGGAAATACGAAGCTTTATTCGAGAGATTTTGC]

[+] EMBL BI806257             [AATCCGAAGCCAGAAGAATCCAAGCNGACANGCTCGGGCTCCCCACCGTGAAACCTCCCAAGAACTTTGCCTGCCAGCCTGCATAAACAAGCAGAGGGATGGAGACCATCTGCCATCCTTACGTCTTCAAGATACCTGGCCTCCGAGTTGNCGCCCATGGAACAATAAAGTTGGAGCTTCAGGCTGCAACATATGAGGAACAGAGCATGCCTGACTGACTGACCAGCGGAAGGAATGCCTGGATATGGATTTNTGCTTGGGTGAGATGCTGACTGCTGGAAGGATGATTAATGAATGCACTGGGTTGCATGCTGGGACTGGCAGGGCACAAAGTGGTCGCAAGTGCATGCCATCCGCGNCAGTTGTCCTGGGGGGATACTGAGAAGTTTTGCTTAGAGGATGTCTCCACGTTTTGTTGTGTGTGCACGGCTGGTTTGTGTTTCATGAAAAGGCAGAGTGCTGTTGTATCAAAACATGCATGATTGATACCCATTTGTATGAACCTTGAGACGNAACTGGAACTTGGTGTGCATTGGCAATGGACANCCCCTGAAATGAGTGGAAATACGAAGCTTTATTCGAGAGATTTTGC]




>consensus_3091#0
AATCCGAAGCCAGAAGAATCCAAGCNGACANGCTCGGGCTCCCCACCGTGAAACCTCCCA
AGAACTTTGCCTGCCAGCCTGCATAAACAAGCAGAGGGATGGAGACCATCTGCCATCCTT
ACGTCTTCAAGATACCTGGCCTCCGAGTTGNCGCCCATGGAACAATAAAGTTGGAGCTTC
AGGCTGCAACATATGAGGAACAGAGCATGCCTGACTGACTGACCAGCGGAAGGAATGCCT
GGATATGGATTTNTGCTTGGGTGAGATGCTGACTGCTGGAAGGATGATTAATGAATGCAC
TGGGTTGCATGCTGGGACTGGCAGGGCACAAAGTGGTCGCAAGTGCATGCCATCCGCGNC
AGTTGTCCTGGGGGGATACTGAGAAGTTTTGCTTAGAGGATGTCTCCACGTTTTGTTGTG
TGTGCACGGCTGGTTTGTGTTTCATGAAAAGGCAGAGTGCTGTTGTATCAAAACATGCAT
GATTGATACCCATTTGTATGAACCTTGAGACGNAACTGGAACTTGGTGTGCATTGGCAAT
GGACANCCCCTGAAATGAGTGGAAATACGAAGCTTTATTCGAGAGATTTTGC

consensusID : consensus_3091#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 210
fasta sequence

                              [GAGAAGTTTTGCTTAGAGGATGTCTCCAGTTTTGTTGTGTGTCACTGCTGTTTTGTTTCATGAAAAGGCAGAGTCTGTTGTATCAAAACATCAATGATTATACCAATTTTATAACATTAGACGTAACTGAACTTGTGTGCATTGCAATGACACATCTGAAATAGTGAAATACGAAGCTTTATTCGAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF315008             [GAGAAGTTTTGCTTAGAGGATGTCTCCAGTTTTGTTGTGTGTCACTGCTGTTTTGTTTCATGAAAAGGCAGAGTCTGTTGTATCAAAACATCAATGATTATACCAATTTTATAACATTAGACGTAACTGAACTTGTGTGCATTGCAATGACACATCTGAAATAGTGAAATACGAAGCTTTATTCGAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_3091#1
GAGAAGTTTTGCTTAGAGGATGTCTCCAGTTTTGTTGTGTGTCACTGCTGTTTTGTTTCA
TGAAAAGGCAGAGTCTGTTGTATCAAAACATCAATGATTATACCAATTTTATAACATTAG
ACGTAACTGAACTTGTGTGCATTGCAATGACACATCTGAAATAGTGAAATACGAAGCTTT
ATTCGAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3091#0      AATCCGAAGCCAGAAGAATCCAAGCNGACANGCTCGGGCTCCCCACCGTGAAACCTCCCA 60
consensus_3091#1      ------------------------------------------------------------
                                                                                  

consensus_3091#0      AGAACTTTGCCTGCCAGCCTGCATAAACAAGCAGAGGGATGGAGACCATCTGCCATCCTT 120
consensus_3091#1      ------------------------------------------------------------
                                                                                  

consensus_3091#0      ACGTCTTCAAGATACCTGGCCTCCGAGTTGNCGCCCATGGAACAATAAAGTTGGAGCTTC 180
consensus_3091#1      ------------------------------------------------------------
                                                                                  

consensus_3091#0      AGGCTGCAACATATGAGGAACAGAGCATGCCTGACTGACTGACCAGCGGAAGGAATGCCT 240
consensus_3091#1      ------------------------------------------------------------
                                                                                  

consensus_3091#0      GGATATGGATTTNTGCTTGGGTGAGATGCTGACTGCTGGAAGGATGATTAATGAATGCAC 300
consensus_3091#1      ------------------------------------------------------------
                                                                                  

consensus_3091#0      TGGGTTGCATGCTGGGACTGGCAGGGCACAAAGTGGTCGCAAGTGCATGCCATCCGCGNC 360
consensus_3091#1      ------------------------------------------------------------
                                                                                  

consensus_3091#0      AGTTGTCCTGGGGGGATACTGAGAAGTTTTGCTTAGAGGATGTCTCCACGTTTTGTTGTG 420
consensus_3091#1      --------------------GAGAAGTTTTGCTTAGAGGATGTCTCCA-GTTTTGTTGTG 39
                                          **************************** ***********

consensus_3091#0      TGTGCACGGCTGGTTTGTGTTTCATGAAAAGGCAGAGTGCTGTTGTATCAAAACATGCAT 480
consensus_3091#1      TGT-CACTGCTG--TTTTGTTTCATGAAAAGGCAGAGT-CTGTTGTATCAAAACATCAAT 95
                      *** *** ****  ** ********************* *****************  **

consensus_3091#0      GATTGATACCCATTTGTATGAACCTTGAGACGNAACTGGAACTTGGTGTGCATTGGCAAT 540
consensus_3091#1      GATT-ATACCAATTT-TATAA--CATTAGACGTAACTG-AACTTG-TGTGCATTG-CAAT 148
                      **** ***** **** *** *  * * ***** ***** ****** ********* ****

consensus_3091#0      GGACANCCCCTGAAATGAGTGGAAATACGAAGCTTTATTCGAGAGATTTTGC-------- 592
consensus_3091#1      GAC--ACATCTGAAAT-AGTG-AAATACGAAGCTTTATTCGAAAAAAAAAAAAAAAAAAA 204
                      *     *  ******* **** ******************** * *              

consensus_3091#0      ------
consensus_3091#1      AAAAAA 210