|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3099#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1720 fasta sequence
[TAGCGATCCGCAGCGCACGCACGCACGGACGGACGCCATGGACGAAGCCCTGGTGGGCAGGCTGGAGGCCGCGGTGTCCCGGCTCGAAGCTCTCAATGGCGCCGCCGGTGCCACGGCGAGAGGCGGCTACGGCGGCCAGGTCGACCACGCGTCGGCGCATGACCCAGCGATCCTGGCGTTCGACGAGCTCGTCGCCGGCGCCGTCGGGAGGGTGTCGGCGGCGGCCGGCAAGATCGGGGCGGAGGTCGCGGAGGTGACCAGGGTGCTGGAGAAGGCGTTCTTGGTTGGGAAGGACCTTCTTGTCAGGACCAAGCAAACTCAGAAGCCAACCGTGGATTCCATCGCAGTATTCATGGGGCCTCTGAATGAAACAATATTGGAGGCAAATTCATTGGCAGAGGGGACAAGATCGAGCCATGGCAACCATCTGAAAGCAGCCGCCGGTAGCCTGGCCGCTCTGGCGTGGATTGGGTACACCGGCAAAGGTTGCGGTATGCCCCTTCCTATTGCTCATGTAGAAGAGAGTTGGCAAATGGCAGAGTTCTACAGCAATAAGGTGCTTGTGGAGTACAAAAGCAAGGACCCTGATCATGTAGAGTGGGCAAAAGCTCTAAAAGAGCTCTTCGTGCCTAGTTTGCGTGACTATGTGAAGACATTCTACCCTTTGGGCCCTGTGTGGCAACCTCCTGGGAGTTCAACAAGCAAAGCACCTTCTGCTCCCTGCCCTCCTTCTGCATCTCTTTTCAGTTCTTCAGCTCAATCATCACAACCAAAAACCGGAATGTCCGCAGTCTTCGCTGAAATCAGCTCTGGGAAATCAATGACACAAGGTCTTAGGACGGTGACAGCTGACATGAAGAGCAAGAATAGAACGGATAGAACTGGTGTTGTAGCTGCTGAAGGAAAAGAAGCTCATAAGAAACCCTCCTCTAGTTCAACCAAATTACCTTCTAAATTGGAGCTCCAAATGGGTCGCAAATGGATTGTTGAACATCATGTTGGCAACAAGAACTTAGTAATTGAAGATTGTGATACCAAGCAATCCATATATGTATTTGGATGCAAGGATTCTGTGCTACAGGTCAAAGGAAAAGTGAACAACATAACTATTGATAAGTGTAGCAAAATGGGATTATTGTTCAAGGGTGTTGTCGCTGCTTGTGAAATTGTGAACTGCAACAGTATAGAGGTCCAATGTGAGGGCTCTGTACCAACTATATCGATTGATAACACTTCTGGCTGCCAACTTTATTTAAGCAAGGAATCTTTAGAGACATCTATAACAACTGCTAAATCTAGTGAAATCAATGCTCTTGTTCCAGATGCAAACAGCGACGGCGATTGGGCCGAGCATTCCTTACCCCAGCAGTTCATTCATGCTTTCAAAGATGGGCAATTTACAACATTACCAGCATGTCATTCAGGCGGCTGACCTACTTCACCATCAACGCCTTTCATTATTGGAGTTCGTTTTCTTTTAATTGTTTAAATTAACTAACCAGTTACCCTTCCATCCTGGTTTGTACATAGAGCAAGCCAGTCCTGTTCATTTGGCTCAGGTACTGCACATTTTCCTCTACCACAACGTATTAATCCTACAGTTCCAACTAGGAAGAATAATCTTCTGTCAGGCTGTATGCAATTCAGTAATTTTGTAACTGTTCTACTGAATGTAATAGTACTCTCAAGTCTCAATTCTCCAACAAATAAAATGGCATCA]
[+] EMBL AK071446 [TAGCGATCCGCAGCGCACGCACGCACGGACGGACGCCATGGACGAAGCCCTGGTGGGCAGGCTGGAGGCCGCGGTGTCCCGGCTCGAAGCTCTCAATGGCGCCGCCGGTGCCACGGCGAGAGGCGGCTACGGCGGCCAGGTCGACCACGCGTCGGCGCATGACCCAGCGATCCTGGCGTTCGACGAGCTCGTCGCCGGCGCCGTCGGGAGGGTGTCGGCGGCGGCCGGCAAGATCGGGGCGGAGGTCGCGGAGGTGACCAGGGTGCTGGAGAAGGCGTTCTTGGTTGGGAAGGACCTTCTTGTCAGGACCAAGCAAACTCAGAAGCCAACCGTGGATTCCATCGCAGTATTCATGGGGCCTCTGAATGAAACAATATTGGAGGCAAATTCATTGGCAGAGGGGACAAGATCGAGCCATGGCAACCATCTGAAAGCAGCCGCCGGTAGCCTGGCCGCTCTGGCGTGGATTGGGTACACCGGCAAAGGTTGCGGTATGCCCCTTCCTATTGCTCATGTAGAAGAGAGTTGGCAAATGGCAGAGTTCTACAGCAATAAGGTGCTTGTGGAGTACAAAAGCAAGGACCCTGATCATGTAGAGTGGGCAAAAGCTCTAAAAGAGCTCTTCGTGCCTAGTTTGCGTGACTATGTGAAGACATTCTACCCTTTGGGCCCTGTGTGGCAACCTCCTGGGAGTTCAACAAGCAAAGCACCTTCTGCTCCCTGCCCTCCTTCTGCATCTCTTTTCAGTTCTTCAGCTCAATCATCACAACCAAAAACCGGAATGTCCGCAGTCTTCGCTGAAATCAGCTCTGGGAAATCAATGACACAAGGTCTTAGGACGGTGACAGCTGACATGAAGAGCAAGAATAGAACGGATAGAACTGGTGTTGTAGCTGCTGAAGGAAAAGAAGCTCATAAGAAACCCTCCTCTAGTTCAACCAAATTACCTTCTAAATTGGAGCTCCAAATGGGTCGCAAATGGATTGTTGAACATCATGTTGGCAACAAGAACTTAGTAATTGAAGATTGTGATACCAAGCAATCCATATATGTATTTGGATGCAAGGATTCTGTGCTACAGGTCAAAGGAAAAGTGAACAACATAACTATTGATAAGTGTAGCAAAATGGGATTATTGTTCAAGGGTGTTGTCGCTGCTTGTGAAATTGTGAACTGCAACAGTATAGAGGTCCAATGTGAGGGCTCTGTACCAACTATATCGATTGATAACACTTCTGGCTGCCAACTTTATTTAAGCAAGGAATCTTTAGAGACATCTATAACAACTGCTAAATCTAGTGAAATCAATGCTCTTGTTCCAGATGCAAACAGCGACGGCGATTGGGCCGAGCATTCCTTACCCCAGCAGTTCATTCATGCTTTCAAAGATGGGCAATTTACAACATTACCAGCATGTCATTCAGGCGGCTGACCTACTTCACCATCAACGCCTTTCATTATTGGAGTTCGTTTTCTTTTAATTGTTTAAATTAACTAACCAGTTACCCTTCCATCCTGGTTTGTACATAGAGCAAGCCAGTCCTGTTCATTTGGCTCAGGTACTGCACATTTTCCTCTACCACAACGTATTAATCCTACAGTTCCAACTAGGAAGAATAATCTTCTGTCAGGCTGTATGCAATTCAGTAATTTTGTAACTGTTCTACTGAATGTAATAGTACTCTCAAGTCTCAATTCTCCAACAAATAAAATGGCATCA]
consensusID : consensus_3099#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 727 fasta sequence
[CNACAATATCCNACCAATTGAGCCNAGGNCAACCACTTTACTTGACACTTGAAAAGTNGGATTTCTAGAAATGNGGAATTTTTGTCTTCATATTGTNCCATAATGCGTGCCAATTCTGCCTGTAGCTGATAAGGCGTAAAACAGCTTATCAGCAACAAAAATATANNNTGTGAGTAGAAAAATTATATCCGTGNCCTTAGCAAAATTCGAAAATTAAGTTTTGAATTCAAATTTTGGCGACGGCTTATAAAGTGAAAGGCAAACAATGNGAGGCCTGAGTCATCTCTTTTTAATATTTGCAGGCCGGGCATTCCTTACCCCAGCAGTTCATTCATGCTTTCAAAGATGGGCAATTTACAACATTACCAGCATGTCATTCAGGCGGCTGACCTACTTCACCATCAACGCCTTTCATTATTGGAGNTCGGTTTCTTTTAATTGNTTAAATTAACTAACCAGGTACCCTTCCATCCTGGGTTGTNCATAGAGCAAGCCAGTCCTGNTCATTTGGCTCAGGNACTGCNCATTTTCCTCTACCACAACGNATTAATCCTACAGGTCCAACTAGGAAGAATAATCTTCTGGCAGGCTGNATGCAATTCAGTAATTTTGNNACTGGTCTACTGAATGGAATAGNACTCCCAAGNCTCAATTCTCCAACAAATAAAAAGGGATCAATTCACTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAGNGGGCGNCNCC]
[+] EMBL CA765398 [CNACAATATCCNACCAATTGAGCCNAGGNCAACCACTTTACTTGACACTTGAAAAGTNGGATTTCTAGAAATGNGGAATTTTTGTCTTCATATTGTNCCATAATGCGTGCCAATTCTGCCTGTAGCTGATAAGGCGTAAAACAGCTTATCAGCAACAAAAATATANNNTGTGAGTAGAAAAATTATATCCGTGNCCTTAGCAAAATTCGAAAATTAAGTTTTGAATTCAAATTTTGGCGACGGCTTATAAAGTGAAAGGCAAACAATGNGAGGCCTGAGTCATCTCTTTTTAATATTTGCAGGCCGGGCATTCCTTACCCCAGCAGTTCATTCATGCTTTCAAAGATGGGCAATTTACAACATTACCAGCATGTCATTCAGGCGGCTGACCTACTTCACCATCAACGCCTTTCATTATTGGAGNTCGGTTTCTTTTAATTGNTTAAATTAACTAACCAGGTACCCTTCCATCCTGGGTTGTNCATAGAGCAAGCCAGTCCTGNTCATTTGGCTCAGGNACTGCNCATTTTCCTCTACCACAACGNATTAATCCTACAGGTCCAACTAGGAAGAATAATCTTCTGGCAGGCTGNATGCAATTCAGTAATTTTGNNACTGGTCTACTGAATGGAATAGNACTCCCAAGNCTCAATTCTCCAACAAATAAAAAGGGATCAATTCACTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAGNGGGCGNCNCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3099#0 TAGCGATCCGCAGCGCACGCACGCACGGACGGACGCCATGGACGAAGCCCTGGTGGGCAG 60
consensus_3099#1 ------------------------------------------------------------
consensus_3099#0 GCTGGAGGCCGCGGTGTCCCGGCTCGAAGCTCTCAATGGCGCCGCCGGTGCCACGGCGAG 120
consensus_3099#1 ------------------------------------------------------------
consensus_3099#0 AGGCGGCTACGGCGGCCAGGTCGACCACGCGTCGGCGCATGACCCAGCGATCCTGGCGTT 180
consensus_3099#1 ------------------------------------------------------------
consensus_3099#0 CGACGAGCTCGTCGCCGGCGCCGTCGGGAGGGTGTCGGCGGCGGCCGGCAAGATCGGGGC 240
consensus_3099#1 ------------------------------------------------------------
consensus_3099#0 GGAGGTCGCGGAGGTGACCAGGGTGCTGGAGAAGGCGTTCTTGGTTGGGAAGGACCTTCT 300
consensus_3099#1 ------------------------------------------------------------
consensus_3099#0 TGTCAGGACCAAGCAAACTCAGAAGCCAACCGTGGATTCCATCGCAGTATTCATGGGGCC 360
consensus_3099#1 ------------------------------------------------------------
consensus_3099#0 TCTGAATGAAACAATATTGGAGGCAAATTCATTGGCAGAGGGGACAAGATCGAGCCATGG 420
consensus_3099#1 ------------------------------------------------------------
consensus_3099#0 CAACCATCTGAAAGCAGCCGCCGGTAGCCTGGCCGCTCTGGCGTGGATTGGGTACACCGG 480
consensus_3099#1 ------------------------------------------------------------
consensus_3099#0 CAAAGGTTGCGGTATGCCCCTTCCTATTGCTCATGTAGAAGAGAGTTGGCAAATGGCAGA 540
consensus_3099#1 ------------------------------------------------------------
consensus_3099#0 GTTCTACAGCAATAAGGTGCTTGTGGAGTACAAAAGCAAGGACCCTGATCATGTAGAGTG 600
consensus_3099#1 ------------------------------------------------------------
consensus_3099#0 GGCAAAAGCTCTAAAAGAGCTCTTCGTGCCTAGTTTGCGTGACTATGTGAAGACATTCTA 660
consensus_3099#1 ------------------------------------------------------------
consensus_3099#0 CCCTTTGGGCCCTGTGTGGCAACCTCCTGGGAGTTCAACAAGCAAAGCACCTTCTGCTCC 720
consensus_3099#1 ------------------------------------------------------------
consensus_3099#0 CTGCCCTCCTTCTGCATCTCTTTTCAGTTCTTCAGCTCAATCATCACAACCAAAAACCGG 780
consensus_3099#1 ------------------------------------------------------------
consensus_3099#0 AATGTCCGCAGTCTTCGCTGAAATCAGCTCTGGGAAATCAATGACACAAGGTCTTAGGAC 840
consensus_3099#1 ------------------------------------------------------------
consensus_3099#0 GGTGACAGCTGACATGAAGAGCAAGAATAGAACGGATAGAACTGGTGTTGTAGCTGCTGA 900
consensus_3099#1 ------------------------------------------------------------
consensus_3099#0 AGGAAAAGAAGCTCATAAGAAACCCTCCTCTAGTTCAACCAAATTACCTTCTAAATTGGA 960
consensus_3099#1 ------------------------------------------------------------
consensus_3099#0 GCTCCAAATGGGTCGCAAATGGATTGTTGAACATCATGTTGGCAACAAGAACTTAGTAAT 1020
consensus_3099#1 ------------------------------------------CNACAATATCCNACCAAT 18
* **** * * * ***
consensus_3099#0 TGAAGATTGTGATACCAAGCAATCCATATATGTATTTGGATGCAAGGATTCTGTGCTACA 1080
consensus_3099#1 TGAGC----CNAGGNCAACCACTTTACTTG-ACACTTGAAAAGTNGGATTT----CTAGA 69
*** * *** ** * * * * *** * ***** *** *
consensus_3099#0 GGTCAAAGGAAAAGTGAACAACATAACTATTGATAAGTGTAGCAAAATGGGATTATTGTT 1140
consensus_3099#1 AAT--GNGGAATTTTTGTCTTCATATTGTNCCATAATGCGTGCCAATTCTGCCTGTAGCT 127
* **** * * **** **** ** ** * * * * * *
consensus_3099#0 CAAGGGTGTTGTCGCTGCTTGTGAAATTGTGAACTGCAACAGTATAGAGGTCCAATGTGA 1200
consensus_3099#1 GATAAGGCGTAAAACAGCTT--------ATCAGCAACAAAAATATANNNTGTGAGTAGAA 179
* * * * **** * * * *** * **** * * *
consensus_3099#0 GGGCTCTGTAC-CAACTATATCGATTGATAACACTTCTGGCTGCCAACTTTATTTAAGCA 1259
consensus_3099#1 AAATTATATCCGTGNCCTTAGCAAAATTCGAAAATTAAGTTTTGAATTCAAATTTTGGCG 239
* * * * * ** * * * * ** * * * **** **
consensus_3099#0 AGGAATCTTTAGAGACATCTATAACAACTGCTAAATCTAGTGAAATCAATGCTCTTGTTC 1319
consensus_3099#1 ACGG-CTTATAAAGTGAAAGGCAAACAATGNGAGGCCTG----AGTCATCTCTTTT-TAA 293
* * * ** ** * ** * ** * ** * *** ** ** *
consensus_3099#0 CAGATGCAAACAGCGACGGCGATTGGGCCGAGCATTCCTTACCCCAGCAGTTCATTCATG 1379
consensus_3099#1 TATTTGCA-----------------GGCCGGGCATTCCTTACCCCAGCAGTTCATTCATG 336
* **** ***** *****************************
consensus_3099#0 CTTTCAAAGATGGGCAATTTACAACATTACCAGCATGTCATTCAGGCGGCTGACCTACTT 1439
consensus_3099#1 CTTTCAAAGATGGGCAATTTACAACATTACCAGCATGTCATTCAGGCGGCTGACCTACTT 396
************************************************************
consensus_3099#0 CACCATCAACGCCTTTCATTATTGGAGTTCGTTTTCTTTTAATTGTTTAAATTAACTAAC 1499
consensus_3099#1 CACCATCAACGCCTTTCATTATTGGAGNTCGGTTTCTTTTAATTGNTTAAATTAACTAAC 456
*************************** *** ************* **************
consensus_3099#0 CAGTTACCCTTCCATCCTGGTTTGTACATAGAGCAAGCCAGTCCTGTTCATTTGGCTCAG 1559
consensus_3099#1 CAGGTACCCTTCCATCCTGGGTTGTNCATAGAGCAAGCCAGTCCTGNTCATTTGGCTCAG 516
*** **************** **** ******************** *************
consensus_3099#0 GTACTGCACATTTTCCTCTACCACAACGTATTAATCCTACAGTTCCAACTAGGAAGAATA 1619
consensus_3099#1 GNACTGCNCATTTTCCTCTACCACAACGNATTAATCCTACAGGTCCAACTAGGAAGAATA 576
* ***** ******************** ************* *****************
consensus_3099#0 ATCTTCTGTCAGGCTGTATGCAATTCAGTAATTTTGTAACTGTTCTACTGAATGTAATAG 1679
consensus_3099#1 ATCTTCTGGCAGGCTGNATGCAATTCAGTAATTTTGNNACTGGTCTACTGAATGGAATAG 636
******** ******* ******************* **** *********** *****
consensus_3099#0 TACTCTCAAGTCTCAATTCTCCAACAAATAAAATGGCATCA------------------- 1720
consensus_3099#1 NACTCCCAAGNCTCAATTCTCCAACAAATAAAAAGGGATCAATTCACTTTTTAAAAAAAA 696
**** **** ********************** ** ****
consensus_3099#0 -------------------------------
consensus_3099#1 AAAAAAAAAAAAAAAAAAAGNGGGCGNCNCC 727
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||