cluster # 3121

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Oryza sativa
cluster # 3121 cluster # 3121 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3121#0 length = 655 sequences # 1

consensus_3121#1 length = 369 sequences # 1

consensusID : consensus_3121#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 655
fasta sequence

                              [AGGGGAGTGGGAACTGGGGGAGCGGGTGGTCCTGAGGTTGATTGAGTTGGAACCAAGCAATAGTGTTCACTATGCCCTGCTGTGCAATGTGTATGCTTCTGCGGGGAGATGGGAAGATGTTCATAGGGTGAAGGCTATCATAAAGGAAAGAGACGAGAAGCTCAGTCCTGGACATCGNCTGGGGAACTTAAACGAGATTCTTCATCAATTTAGGGAGAGGCAACCTGAGAATCAAGAAATATATGGAATCTTGGATGGCTTGGTGTCAAGACTTAAGTTAACAAGCAGAGTAAATGGGCAAATTGAATCTGGAGTTAAATAGCTCAGTGTACACTCACAGATTGACTTGAAGCTGTACAGAATTTTTTGGGGGCAACTAGCCGATTTCAAGGGGGCTTATGGGTTTGATTTTTTGANGGGTGTTCANGAGGCTATGTAGATAACCCACATGTCTGACAGGGNTTCAAAGAAAGNGGATACTCGAGTGNGCTCACTATCAGNCCCAAGCAACTGAANAGTCCGGGTTGGGATCAAAAATGGTTTTNAGGCTTTTGAGCCTGATATTGTGCCNCATTNACATACCTACNTTATTGCNCCCCAAACAGCAAGGGCTCNTGNAANATACNCCTTTGCTTTAANGNCNCGGGGGAAGACC]

[+] EMBL CA765525             [AGGGGAGTGGGAACTGGGGGAGCGGGTGGTCCTGAGGTTGATTGAGTTGGAACCAAGCAATAGTGTTCACTATGCCCTGCTGTGCAATGTGTATGCTTCTGCGGGGAGATGGGAAGATGTTCATAGGGTGAAGGCTATCATAAAGGAAAGAGACGAGAAGCTCAGTCCTGGACATCGNCTGGGGAACTTAAACGAGATTCTTCATCAATTTAGGGAGAGGCAACCTGAGAATCAAGAAATATATGGAATCTTGGATGGCTTGGTGTCAAGACTTAAGTTAACAAGCAGAGTAAATGGGCAAATTGAATCTGGAGTTAAATAGCTCAGTGTACACTCACAGATTGACTTGAAGCTGTACAGAATTTTTTGGGGGCAACTAGCCGATTTCAAGGGGGCTTATGGGTTTGATTTTTTGANGGGTGTTCANGAGGCTATGTAGATAACCCACATGTCTGACAGGGNTTCAAAGAAAGNGGATACTCGAGTGNGCTCACTATCAGNCCCAAGCAACTGAANAGTCCGGGTTGGGATCAAAAATGGTTTTNAGGCTTTTGAGCCTGATATTGTGCCNCATTNACATACCTACNTTATTGCNCCCCAAACAGCAAGGGCTCNTGNAANATACNCCTTTGCTTTAANGNCNCGGGGGAAGACC]




>consensus_3121#0
AGGGGAGTGGGAACTGGGGGAGCGGGTGGTCCTGAGGTTGATTGAGTTGGAACCAAGCAA
TAGTGTTCACTATGCCCTGCTGTGCAATGTGTATGCTTCTGCGGGGAGATGGGAAGATGT
TCATAGGGTGAAGGCTATCATAAAGGAAAGAGACGAGAAGCTCAGTCCTGGACATCGNCT
GGGGAACTTAAACGAGATTCTTCATCAATTTAGGGAGAGGCAACCTGAGAATCAAGAAAT
ATATGGAATCTTGGATGGCTTGGTGTCAAGACTTAAGTTAACAAGCAGAGTAAATGGGCA
AATTGAATCTGGAGTTAAATAGCTCAGTGTACACTCACAGATTGACTTGAAGCTGTACAG
AATTTTTTGGGGGCAACTAGCCGATTTCAAGGGGGCTTATGGGTTTGATTTTTTGANGGG
TGTTCANGAGGCTATGTAGATAACCCACATGTCTGACAGGGNTTCAAAGAAAGNGGATAC
TCGAGTGNGCTCACTATCAGNCCCAAGCAACTGAANAGTCCGGGTTGGGATCAAAAATGG
TTTTNAGGCTTTTGAGCCTGATATTGTGCCNCATTNACATACCTACNTTATTGCNCCCCA
AACAGCAAGGGCTCNTGNAANATACNCCTTTGCTTTAANGNCNCGGGGGAAGACC

consensusID : consensus_3121#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence

                              [GCTCAGTGTACACTCACAGATTGATTTGAAGCTGTACAGAATTTTTTGGGGGCAACTAGCCGATTTCAAGTGGCTTATGGTTTTGATTTTTTGAGGGGTGTTCAGGAGGCTATGTAGATAACCCACATGTCTGACAGGGTTTCAAGAAGTGGATACTCGAGTGTGCTCACTATCAGTCCAAAGCAACTGAAGAGTCGGTTGGATCAGAAATGTTTTCAGGCTTTGAGCTGATATGTGCACATCACATACATACATATGCACCAAACAGCAAGTCTCTGAATATACACTTGCTTAGTGCCAGTGGAAGACAATTATATGAATAGAGAGAATTCTCATTCACTTTATAAATGCTCTCGATAACTAGCGCCT]

[+] EMBL CB096607             [GCTCAGTGTACACTCACAGATTGATTTGAAGCTGTACAGAATTTTTTGGGGGCAACTAGCCGATTTCAAGTGGCTTATGGTTTTGATTTTTTGAGGGGTGTTCAGGAGGCTATGTAGATAACCCACATGTCTGACAGGGTTTCAAGAAGTGGATACTCGAGTGTGCTCACTATCAGTCCAAAGCAACTGAAGAGTCGGTTGGATCAGAAATGTTTTCAGGCTTTGAGCTGATATGTGCACATCACATACATACATATGCACCAAACAGCAAGTCTCTGAATATACACTTGCTTAGTGCCAGTGGAAGACAATTATATGAATAGAGAGAATTCTCATTCACTTTATAAATGCTCTCGATAACTAGCGCCT]




>consensus_3121#1
GCTCAGTGTACACTCACAGATTGATTTGAAGCTGTACAGAATTTTTTGGGGGCAACTAGC
CGATTTCAAGTGGCTTATGGTTTTGATTTTTTGAGGGGTGTTCAGGAGGCTATGTAGATA
ACCCACATGTCTGACAGGGTTTCAAGAAGTGGATACTCGAGTGTGCTCACTATCAGTCCA
AAGCAACTGAAGAGTCGGTTGGATCAGAAATGTTTTCAGGCTTTGAGCTGATATGTGCAC
ATCACATACATACATATGCACCAAACAGCAAGTCTCTGAATATACACTTGCTTAGTGCCA
GTGGAAGACAATTATATGAATAGAGAGAATTCTCATTCACTTTATAAATGCTCTCGATAA
CTAGCGCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3121#0      AGGGGAGTGGGAACTGGGGGAGCGGGTGGTCCTGAGGTTGATTGAGTTGGAACCAAGCAA 60
consensus_3121#1      ------------------------------------------------------------
                                                                                  

consensus_3121#0      TAGTGTTCACTATGCCCTGCTGTGCAATGTGTATGCTTCTGCGGGGAGATGGGAAGATGT 120
consensus_3121#1      ------------------------------------------------------------
                                                                                  

consensus_3121#0      TCATAGGGTGAAGGCTATCATAAAGGAAAGAGACGAGAAGCTCAGTCCTGGACATCGNCT 180
consensus_3121#1      ------------------------------------------------------------
                                                                                  

consensus_3121#0      GGGGAACTTAAACGAGATTCTTCATCAATTTAGGGAGAGGCAACCTGAGAATCAAGAAAT 240
consensus_3121#1      ------------------------------------------------------------
                                                                                  

consensus_3121#0      ATATGGAATCTTGGATGGCTTGGTGTCAAGACTTAAGTTAACAAGCAGAGTAAATGGGCA 300
consensus_3121#1      ------------------------------------------------------------
                                                                                  

consensus_3121#0      AATTGAATCTGGAGTTAAATAGCTCAGTGTACACTCACAGATTGACTTGAAGCTGTACAG 360
consensus_3121#1      ---------------------GCTCAGTGTACACTCACAGATTGATTTGAAGCTGTACAG 39
                                           ************************ **************

consensus_3121#0      AATTTTTTGGGGGCAACTAGCCGATTTCAAGGGGGCTTATGGGTTTGATTTTTTGANGGG 420
consensus_3121#1      AATTTTTTGGGGGCAACTAGCCGATTTCAAGTGG-CTTATGGTTTTGATTTTTTGAGGGG 98
                      ******************************* ** ******* ************* ***

consensus_3121#0      TGTTCANGAGGCTATGTAGATAACCCACATGTCTGACAGGGNTTCAAAGAAAGNGGATAC 480
consensus_3121#1      TGTTCAGGAGGCTATGTAGATAACCCACATGTCTGACAGGGTTTCAAG--AAGTGGATAC 156
                      ****** ********************************** *****   *** ******

consensus_3121#0      TCGAGTGNGCTCACTATCAGNCCCAAGCAACTGAANAGTCCGGGTTGGGATCAAAAATGG 540
consensus_3121#1      TCGAGTGTGCTCACTATCAGTCCAAAGCAACTGAAGAGTC--GGTTGG-ATCAGAAATG- 212
                      ******* ************ ** *********** ****  ****** **** ***** 

consensus_3121#0      TTTTNAGGCTTTTGAGCCTGATATTGTGCCNCATTNACATACCTACNTTATTGCNCCCCA 600
consensus_3121#1      TTTTCAGGCTTT-GAGC-TGATAT-GTGC-ACAT-CACATACATACAT----ATGCACCA 263
                      **** ******* **** ****** ****  ***  ****** *** *       * ***

consensus_3121#0      AACAGCAAGGGCTCNTGNAANATACNCCTTTGCTTTAANGNCNCGGGGGAAGACC----- 655
consensus_3121#1      AACAGCAAG---TCTCTGAATATACAC--TTGCTTAGTGCCAGTGGAAGACAATTATATG 318
                      *********   **    ** **** *  ******         **  **  *       

consensus_3121#0      ---------------------------------------------------
consensus_3121#1      AATAGAGAGAATTCTCATTCACTTTATAAATGCTCTCGATAACTAGCGCCT 369