cluster # 3275

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Oryza sativa
cluster # 3275 cluster # 3275 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3275#0 length = 858 sequences # 1

consensus_3275#1 length = 464 sequences # 1

consensusID : consensus_3275#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 858
fasta sequence

                              [GGTGATGCACTGAGATTGTTTGATGAAATGCCCACACGCATTGAGCCAGATGGAGTGACTTACCTTGCTGTGTTGTGCGGGTGCAACCATTCTGGCCTTGTGGATGATGGGCTCAGGGTATTCAACTCGATGCGAGTTGCTCCAAATATGAAGCACTATGGAACAATTGTGGACCTTCTTGGCCGTGCAGGCCGTCTCACTGAGGCATATGACACCGTCATTTCTATGCCATTTCCAGCTGATATTGTCCTTTGGCAGACATTGTTGGGTGCAGCCAAGATGCATGGGGTTGTTGAGCTTGCGGAGTTGGCTGCCAATAAACTTGCTGAGCTTGGTTCTAATGTCGATGGTGACTATGTGCTCCTATCGAATGTTTATGCATCCAAGGCTCGGTGGATGGATGTTGGTCGAGTACGTGATACCATGCGAAGCAACGATGTGCGAAAAGTTCCTGGCTTCAGCTACACAGAAATAGATGGAGTAATGCATAAGTTTATTAATGGTGACAAAGAGCACCCGAGGTGGCAAGAGATATACAGAGCACTGGAGGATTGTATCAAGAATTAGTGAGCTAGGATATGAGCCAGAGACAAGCAATGTACTGCATGACATTGGGGAGGAGGAAAAACAGTATGCATTATGTTATCATAGTGAGAAGCTGGCCATTGCATTTGGGTTGATTGCAACACCACCTGGGGAGACTCTTCGGGTGATCAAAAATCTCCGAATATGTGGGGACTGTCATGTGGTGGCAAAGCTCATCTCTNAAGCTTATGGTCGGGGTATTGGCATTCGGGACAGGGCGAGATTNCATCGACTTGAANATGGGCAGNGNTCCTGCAGGGGATTACTGGTAAA]

[+] EMBL CA767603             [GGTGATGCACTGAGATTGTTTGATGAAATGCCCACACGCATTGAGCCAGATGGAGTGACTTACCTTGCTGTGTTGTGCGGGTGCAACCATTCTGGCCTTGTGGATGATGGGCTCAGGGTATTCAACTCGATGCGAGTTGCTCCAAATATGAAGCACTATGGAACAATTGTGGACCTTCTTGGCCGTGCAGGCCGTCTCACTGAGGCATATGACACCGTCATTTCTATGCCATTTCCAGCTGATATTGTCCTTTGGCAGACATTGTTGGGTGCAGCCAAGATGCATGGGGTTGTTGAGCTTGCGGAGTTGGCTGCCAATAAACTTGCTGAGCTTGGTTCTAATGTCGATGGTGACTATGTGCTCCTATCGAATGTTTATGCATCCAAGGCTCGGTGGATGGATGTTGGTCGAGTACGTGATACCATGCGAAGCAACGATGTGCGAAAAGTTCCTGGCTTCAGCTACACAGAAATAGATGGAGTAATGCATAAGTTTATTAATGGTGACAAAGAGCACCCGAGGTGGCAAGAGATATACAGAGCACTGGAGGATTGTATCAAGAATTAGTGAGCTAGGATATGAGCCAGAGACAAGCAATGTACTGCATGACATTGGGGAGGAGGAAAAACAGTATGCATTATGTTATCATAGTGAGAAGCTGGCCATTGCATTTGGGTTGATTGCAACACCACCTGGGGAGACTCTTCGGGTGATCAAAAATCTCCGAATATGTGGGGACTGTCATGTGGTGGCAAAGCTCATCTCTNAAGCTTATGGTCGGGGTATTGGCATTCGGGACAGGGCGAGATTNCATCGACTTGAANATGGGCAGNGNTCCTGCAGGGGATTACTGGTAAA]




>consensus_3275#0
GGTGATGCACTGAGATTGTTTGATGAAATGCCCACACGCATTGAGCCAGATGGAGTGACT
TACCTTGCTGTGTTGTGCGGGTGCAACCATTCTGGCCTTGTGGATGATGGGCTCAGGGTA
TTCAACTCGATGCGAGTTGCTCCAAATATGAAGCACTATGGAACAATTGTGGACCTTCTT
GGCCGTGCAGGCCGTCTCACTGAGGCATATGACACCGTCATTTCTATGCCATTTCCAGCT
GATATTGTCCTTTGGCAGACATTGTTGGGTGCAGCCAAGATGCATGGGGTTGTTGAGCTT
GCGGAGTTGGCTGCCAATAAACTTGCTGAGCTTGGTTCTAATGTCGATGGTGACTATGTG
CTCCTATCGAATGTTTATGCATCCAAGGCTCGGTGGATGGATGTTGGTCGAGTACGTGAT
ACCATGCGAAGCAACGATGTGCGAAAAGTTCCTGGCTTCAGCTACACAGAAATAGATGGA
GTAATGCATAAGTTTATTAATGGTGACAAAGAGCACCCGAGGTGGCAAGAGATATACAGA
GCACTGGAGGATTGTATCAAGAATTAGTGAGCTAGGATATGAGCCAGAGACAAGCAATGT
ACTGCATGACATTGGGGAGGAGGAAAAACAGTATGCATTATGTTATCATAGTGAGAAGCT
GGCCATTGCATTTGGGTTGATTGCAACACCACCTGGGGAGACTCTTCGGGTGATCAAAAA
TCTCCGAATATGTGGGGACTGTCATGTGGTGGCAAAGCTCATCTCTNAAGCTTATGGTCG
GGGTATTGGCATTCGGGACAGGGCGAGATTNCATCGACTTGAANATGGGCAGNGNTCCTG
CAGGGGATTACTGGTAAA

consensusID : consensus_3275#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [TTGTATCCCAGAAATTAGTGACTAGGATATGACCAGAGACAACATGTACTGCATGACACTTGGGGAGGAGGAAAACACGTATGCCTTATGTTATCATAGTGAGAAGCTGGCCTTGCATTTGGTTGATTGCAACACCACCTGGGGAGACTCTTCGGTGATCAAATCTCCGAATATGTGGGGACTGTCATGTGGTGCCAAGCTCATCTCTAAAGCTTATGTCGTGTTATTGTCACTTCGGGACACGGGCGAGATTCCATCGATTTGAAGATGGCAGTGTTCCTGCACGGGATTACTGGTAAATAGTGGCATGCTGGATCATTTAAAGGATAAATTTGGCATGAGCTCGTGGAGATGAGGTCAAAAGGATGATATAACATGTCTCTGATCCAGCATATCGATTTGTATGGATACTGGAACATATTCTTGAACCATGCATATCACTGTCTGACACTTCAAAAAAAAAA]

[+] EMBL BI801220             [TTGTATCCCAGAAATTAGTGACTAGGATATGACCAGAGACAACATGTACTGCATGACACTTGGGGAGGAGGAAAACACGTATGCCTTATGTTATCATAGTGAGAAGCTGGCCTTGCATTTGGTTGATTGCAACACCACCTGGGGAGACTCTTCGGTGATCAAATCTCCGAATATGTGGGGACTGTCATGTGGTGCCAAGCTCATCTCTAAAGCTTATGTCGTGTTATTGTCACTTCGGGACACGGGCGAGATTCCATCGATTTGAAGATGGCAGTGTTCCTGCACGGGATTACTGGTAAATAGTGGCATGCTGGATCATTTAAAGGATAAATTTGGCATGAGCTCGTGGAGATGAGGTCAAAAGGATGATATAACATGTCTCTGATCCAGCATATCGATTTGTATGGATACTGGAACATATTCTTGAACCATGCATATCACTGTCTGACACTTCAAAAAAAAAA]




>consensus_3275#1
TTGTATCCCAGAAATTAGTGACTAGGATATGACCAGAGACAACATGTACTGCATGACACT
TGGGGAGGAGGAAAACACGTATGCCTTATGTTATCATAGTGAGAAGCTGGCCTTGCATTT
GGTTGATTGCAACACCACCTGGGGAGACTCTTCGGTGATCAAATCTCCGAATATGTGGGG
ACTGTCATGTGGTGCCAAGCTCATCTCTAAAGCTTATGTCGTGTTATTGTCACTTCGGGA
CACGGGCGAGATTCCATCGATTTGAAGATGGCAGTGTTCCTGCACGGGATTACTGGTAAA
TAGTGGCATGCTGGATCATTTAAAGGATAAATTTGGCATGAGCTCGTGGAGATGAGGTCA
AAAGGATGATATAACATGTCTCTGATCCAGCATATCGATTTGTATGGATACTGGAACATA
TTCTTGAACCATGCATATCACTGTCTGACACTTCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3275#0      GGTGATGCACTGAGATTGTTTGATGAAATGCCCACACGCATTGAGCCAGATGGAGTGACT 60
consensus_3275#1      ------------------------------------------------------------
                                                                                  

consensus_3275#0      TACCTTGCTGTGTTGTGCGGGTGCAACCATTCTGGCCTTGTGGATGATGGGCTCAGGGTA 120
consensus_3275#1      ------------------------------------------------------------
                                                                                  

consensus_3275#0      TTCAACTCGATGCGAGTTGCTCCAAATATGAAGCACTATGGAACAATTGTGGACCTTCTT 180
consensus_3275#1      ------------------------------------------------------------
                                                                                  

consensus_3275#0      GGCCGTGCAGGCCGTCTCACTGAGGCATATGACACCGTCATTTCTATGCCATTTCCAGCT 240
consensus_3275#1      ------------------------------------------------------------
                                                                                  

consensus_3275#0      GATATTGTCCTTTGGCAGACATTGTTGGGTGCAGCCAAGATGCATGGGGTTGTTGAGCTT 300
consensus_3275#1      ------------------------------------------------------------
                                                                                  

consensus_3275#0      GCGGAGTTGGCTGCCAATAAACTTGCTGAGCTTGGTTCTAATGTCGATGGTGACTATGTG 360
consensus_3275#1      ------------------------------------------------------------
                                                                                  

consensus_3275#0      CTCCTATCGAATGTTTATGCATCCAAGGCTCGGTGGATGGATGTTGGTCGAGTACGTGAT 420
consensus_3275#1      ------------------------------------------------------------
                                                                                  

consensus_3275#0      ACCATGCGAAGCAACGATGTGCGAAAAGTTCCTGGCTTCAGCTACACAGAAATAGATGGA 480
consensus_3275#1      ------------------------------------------------------------
                                                                                  

consensus_3275#0      GTAATGCATAAGTTTATTAATGGTGACAAAGAGCACCCGAGGTGGCAAGAGATATACAGA 540
consensus_3275#1      ------------------------------------------------------------
                                                                                  

consensus_3275#0      GCACTGGAGGATTGTATC--AAGAATTAGTGAGCTAGGATATGAGCCAGAGACAAGCAAT 598
consensus_3275#1      -----------TTGTATCCCAGAAATTAGTGA-CTAGGATATGA-CCAGAGACAA--CAT 45
                                 *******  *  ********* *********** **********   **

consensus_3275#0      GTACTGCATGACA-TTGGGGAGGAGGAAAAACAGTATGCATTATGTTATCATAGTGAGAA 657
consensus_3275#1      GTACTGCATGACACTTGGGGAGGAGGAAAACACGTATGCCTTATGTTATCATAGTGAGAA 105
                      ************* ****************   ****** ********************

consensus_3275#0      GCTGGCCATTGCATTTGGGTTGATTGCAACACCACCTGGGGAGACTCTTCGGGTGATCAA 717
consensus_3275#1      GCTGGCC-TTGCATTTGG-TTGATTGCAACACCACCTGGGGAGACTCTTCGG-TGATCAA 162
                      ******* ********** ********************************* *******

consensus_3275#0      AAATCTCCGAATATGTGGGGACTGTCATGTGGTGGCAAAGCTCATCTCTNAAGCTTATGG 777
consensus_3275#1      --ATCTCCGAATATGTGGGGACTGTCATGTGGTGCCAA-GCTCATCTCTAAAGCTTATG- 218
                        ******************************** *** ********** ********* 

consensus_3275#0      TCGGGGTATTGGCA-TTCGGGACA-GGGCGAGATTNCATCGACTTGAANATGGGCAGNGN 835
consensus_3275#1      TCGTGTTATTGTCACTTCGGGACACGGGCGAGATTCCATCGATTTGAAGATGG-CAGTGT 277
                      *** * ***** ** ********* ********** ****** ***** **** *** * 

consensus_3275#0      TCCTGCAGGGGATTACTGGTAAA------------------------------------- 858
consensus_3275#1      TCCTGCACGGGATTACTGGTAAATAGTGGCATGCTGGATCATTTAAAGGATAAATTTGGC 337
                      ******* ***************                                     

consensus_3275#0      ------------------------------------------------------------
consensus_3275#1      ATGAGCTCGTGGAGATGAGGTCAAAAGGATGATATAACATGTCTCTGATCCAGCATATCG 397
                                                                                  

consensus_3275#0      ------------------------------------------------------------
consensus_3275#1      ATTTGTATGGATACTGGAACATATTCTTGAACCATGCATATCACTGTCTGACACTTCAAA 457
                                                                                  

consensus_3275#0      -------
consensus_3275#1      AAAAAAA 464